Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:06:17 (1329710): wrapper (7.7.26015): starting
20:06:17 (1329710): wrapper: running run_atlas (--nthreads 3)
[2025-10-23 20:06:17] Arguments: --nthreads 3
[2025-10-23 20:06:17] Threads: 3
[2025-10-23 20:06:17] Checking for CVMFS
[2025-10-23 20:06:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-23 20:06:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-23 20:06:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-23 20:06:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-23 20:06:17] 2.9.2.0 1082770 902 60784 152045 0 56 28988867 36864000 0 130560 0 640079 99.989 35826 1013 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-23 20:06:17] CVMFS is ok
[2025-10-23 20:06:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-23 20:06:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-23 20:06:17] Further information can be found at the LHC@home message board.
[2025-10-23 20:06:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-23 20:06:17] Checking for apptainer binary...
[2025-10-23 20:06:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-23 20:06:17] Running /usr/bin/apptainer --version
[2025-10-23 20:06:17] apptainer version 1.4.1-1.1
[2025-10-23 20:06:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-23 20:06:17] thA389a
[2025-10-23 20:06:17] apptainer works
[2025-10-23 20:06:17] Set ATHENA_PROC_NUMBER=3
[2025-10-23 20:06:17] Set ATHENA_CORE_NUMBER=3
[2025-10-23 20:06:17] Starting ATLAS job with PandaID=6853082045
[2025-10-23 20:06:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-23 21:42:41]  *** The last 200 lines of the pilot log: ***
[2025-10-23 21:42:41] 2025-10-23 19:42:02,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-23 21:42:41] 2025-10-23 19:42:02,801 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-23 21:42:41] 2025-10-23 19:42:02,801 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-23 21:42:41] 2025-10-23 19:42:02,801 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-23 21:42:41] 2025-10-23 19:42:02,801 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-23 21:42:41] 2025-10-23 19:42:02,801 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-23 21:42:41] 2025-10-23 19:42:02,801 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-23 21:42:41] 2025-10-23 19:42:02,801 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-23 21:42:41] 2025-10-23 19:42:02,802 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-23 21:42:41] 2025-10-23 19:42:02,802 | INFO     | job 6853082045 has completed (purged errors)
[2025-10-23 21:42:41] 2025-10-23 19:42:02,802 | INFO     | overall cleanup function is called
[2025-10-23 21:42:41] 2025-10-23 19:42:03,809 | INFO     | --- collectZombieJob: --- 10, [1339878]
[2025-10-23 21:42:41] 2025-10-23 19:42:03,809 | INFO     | zombie collector waiting for pid 1339878
[2025-10-23 21:42:41] 2025-10-23 19:42:03,810 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-23 21:42:41] 2025-10-23 19:42:03,810 | INFO     | collected zombie processes
[2025-10-23 21:42:41] 2025-10-23 19:42:03,810 | INFO     | will attempt to kill all subprocesses of pid=1339878
[2025-10-23 21:42:41] 2025-10-23 19:42:03,851 | INFO     | process IDs to be killed: [1339878] (in reverse order)
[2025-10-23 21:42:41] 2025-10-23 19:42:03,876 | WARNING  | found no corresponding commands to process id(s)
[2025-10-23 21:42:41] 2025-10-23 19:42:03,876 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-23 21:42:41] 2025-10-23 19:42:03,877 | INFO     | did not find any defunct processes belonging to 1339878
[2025-10-23 21:42:41] 2025-10-23 19:42:03,878 | INFO     | did not find any defunct processes belonging to 1339878
[2025-10-23 21:42:41] 2025-10-23 19:42:03,878 | INFO     | ready for new job
[2025-10-23 21:42:41] 2025-10-23 19:42:03,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-23 21:42:41] 2025-10-23 19:42:03,879 | INFO     | ***************************************
[2025-10-23 21:42:41] 2025-10-23 19:42:03,879 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-23 21:42:41] 2025-10-23 19:42:03,879 | INFO     | ***************************************
[2025-10-23 21:42:41] 2025-10-23 19:42:03,879 | INFO     | 
[2025-10-23 21:42:41] 2025-10-23 19:42:03,879 | INFO     | architecture information:
[2025-10-23 21:42:41] 2025-10-23 19:42:03,879 | INFO     | executing command: cat /etc/os-release
[2025-10-23 21:42:41] 2025-10-23 19:42:03,889 | INFO     | cat /etc/os-release:
[2025-10-23 21:42:41] NAME="CentOS Linux"
[2025-10-23 21:42:41] VERSION="7 (Core)"
[2025-10-23 21:42:41] ID="centos"
[2025-10-23 21:42:41] ID_LIKE="rhel fedora"
[2025-10-23 21:42:41] VERSION_ID="7"
[2025-10-23 21:42:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-23 21:42:41] ANSI_COLOR="0;31"
[2025-10-23 21:42:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-23 21:42:41] HOME_URL="https://www.centos.org/"
[2025-10-23 21:42:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-23 21:42:41] 
[2025-10-23 21:42:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-23 21:42:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-23 21:42:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-23 21:42:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-23 21:42:41] 
[2025-10-23 21:42:41] 2025-10-23 19:42:03,889 | INFO     | ***************************************
[2025-10-23 21:42:41] 2025-10-23 19:42:04,392 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | INFO     | sufficient remaining disk space (231139704832 B)
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | INFO     | current server update state: UPDATING_FINAL
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | INFO     | update_server=False
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | INFO     | aborting loop
[2025-10-23 21:42:41] 2025-10-23 19:42:04,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-23 21:42:41] 2025-10-23 19:42:04,407 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-23 21:42:41] 2025-10-23 19:42:04,956 | INFO     | all payload control threads have been joined
[2025-10-23 21:42:41] 2025-10-23 19:42:04,988 | INFO     | all job control threads have been joined
[2025-10-23 21:42:41] 2025-10-23 19:42:05,194 | INFO     | all data control threads have been joined
[2025-10-23 21:42:41] 2025-10-23 19:42:05,412 | INFO     | [job] retrieve thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:05,412 | INFO     | [job] queue monitor thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:05,413 | INFO     | [job] job monitor thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:05,559 | INFO     | [job] create_data_payload thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:05,758 | INFO     | [payload] failed_post thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:05,962 | INFO     | [payload] control thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:05,994 | INFO     | [job] control thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:06,200 | INFO     | [data] control thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:06,223 | INFO     | [payload] validate_post thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:06,412 | INFO     | [data] copytool_out thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:06,433 | INFO     | [data] copytool_in thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:06,827 | INFO     | [job] validate thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:06,839 | INFO     | [payload] execute_payloads thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:06,906 | INFO     | [payload] validate_pre thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:08,413 | INFO     | [data] queue_monitor thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:14,458 | INFO     | job.realtimelogging is not enabled
[2025-10-23 21:42:41] 2025-10-23 19:42:15,464 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-23 21:42:41] 2025-10-23 19:42:34,138 | INFO     | PID=1333436 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-23 21:42:41] 2025-10-23 19:42:34,138 | INFO     | found 0 job(s) in 20 queues
[2025-10-23 21:42:41] 2025-10-23 19:42:34,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-23 21:42:41] 2025-10-23 19:42:34,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-23 21:42:41] 2025-10-23 19:42:35,386 | INFO     | [monitor] cgroup control has ended
[2025-10-23 21:42:41] 2025-10-23 19:42:35,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140205090707264)>', '<ExcThread(monitor, started 140204224534272)>']
[2025-10-23 21:42:41] 2025-10-23 19:42:36,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-23 21:42:41] 2025-10-23 19:42:36,149 | INFO     | [monitor] control thread has ended
[2025-10-23 21:42:41] 2025-10-23 19:42:40,999 | INFO     | all workflow threads have been joined
[2025-10-23 21:42:41] 2025-10-23 19:42:40,999 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-23 21:42:41] 2025-10-23 19:42:41,000 | INFO     | traces error code: 0
[2025-10-23 21:42:41] 2025-10-23 19:42:41,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-23 21:42:41] 2025-10-23 19:42:41,047 [wrapper] ==== pilot stdout END ====
[2025-10-23 21:42:41] 2025-10-23 19:42:41,050 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-23 21:42:41] 2025-10-23 19:42:41,052 [wrapper] pilotpid: 1333436
[2025-10-23 21:42:41] 2025-10-23 19:42:41,055 [wrapper] Pilot exit status: 0
[2025-10-23 21:42:41] 2025-10-23 19:42:41,063 [wrapper] pandaids: 6853082045
[2025-10-23 21:42:41] 2025-10-23 19:42:41,079 [wrapper] cleanup supervisor_pilot 1352559 1333437
[2025-10-23 21:42:41] 2025-10-23 19:42:41,082 [wrapper] Test setup, not cleaning
[2025-10-23 21:42:41] 2025-10-23 19:42:41,085 [wrapper] apfmon messages muted
[2025-10-23 21:42:41] 2025-10-23 19:42:41,087 [wrapper] ==== wrapper stdout END ====
[2025-10-23 21:42:41] 2025-10-23 19:42:41,090 [wrapper] ==== wrapper stderr END ====
[2025-10-23 21:42:41]  *** Error codes and diagnostics ***
[2025-10-23 21:42:41]     "exeErrorCode": 0,
[2025-10-23 21:42:41]     "exeErrorDiag": "",
[2025-10-23 21:42:41]     "pilotErrorCode": 0,
[2025-10-23 21:42:41]     "pilotErrorDiag": "",
[2025-10-23 21:42:41]  *** Listing of results directory ***
[2025-10-23 21:42:41] total 428680
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc    557409 Oct 21 15:27 pilot3.tar.gz
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc      5112 Oct 21 16:18 queuedata.json
[2025-10-23 21:42:41] -rwx------ 1 boinc boinc     36292 Oct 21 16:18 runpilot2-wrapper.sh
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc       100 Oct 23 20:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-23 21:42:41] -rwxr-xr-x 1 boinc boinc      7986 Oct 23 20:06 run_atlas
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc       105 Oct 23 20:06 job.xml
[2025-10-23 21:42:41] -rw-r--r-- 2 boinc boinc 230830643 Oct 23 20:06 EVNT.46771634._002737.pool.root.1
[2025-10-23 21:42:41] drwxrwx--x 2 boinc boinc      4096 Oct 23 20:06 shared
[2025-10-23 21:42:41] -rw-r--r-- 2 boinc boinc    569680 Oct 23 20:06 input.tar.gz
[2025-10-23 21:42:41] -rw-r--r-- 2 boinc boinc     15120 Oct 23 20:06 start_atlas.sh
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc         0 Oct 23 20:06 boinc_setup_complete
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc      6195 Oct 23 20:06 init_data.xml
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc         0 Oct 23 20:06 boinc_lockfile
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc      2560 Oct 23 20:06 pandaJob.out
[2025-10-23 21:42:41] -rw------- 1 boinc boinc    977777 Oct 23 20:06 agis_schedconf.cvmfs.json
[2025-10-23 21:42:41] -rw------- 1 boinc boinc   1560740 Oct 23 20:06 agis_ddmendpoints.agis.ALL.json
[2025-10-23 21:42:41] drwx------ 5 boinc boinc      4096 Oct 23 20:06 pilot3
[2025-10-23 21:42:41] -rw------- 1 boinc boinc 202047871 Oct 23 21:41 HITS.46771637._068946.pool.root.1
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc       529 Oct 23 21:41 boinc_task_state.xml
[2025-10-23 21:42:41] -rw------- 1 boinc boinc      1023 Oct 23 21:41 memory_monitor_summary.json
[2025-10-23 21:42:41] -rw------- 1 boinc boinc    261105 Oct 23 21:41 log.46771637._068946.job.log.tgz.1
[2025-10-23 21:42:41] -rw------- 1 boinc boinc        95 Oct 23 21:41 pilot_heartbeat.json
[2025-10-23 21:42:41] -rw------- 1 boinc boinc      7774 Oct 23 21:42 heartbeat.json
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc      8192 Oct 23 21:42 boinc_mmap_file
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc        27 Oct 23 21:42 wrapper_checkpoint.txt
[2025-10-23 21:42:41] -rw------- 1 boinc boinc      4824 Oct 23 21:42 pilotlog.txt
[2025-10-23 21:42:41] -rw------- 1 boinc boinc    834660 Oct 23 21:42 log.46771637._068946.job.log.1
[2025-10-23 21:42:41] -rw------- 1 boinc boinc       357 Oct 23 21:42 output.list
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc       620 Oct 23 21:42 runtime_log
[2025-10-23 21:42:41] -rw------- 1 boinc boinc   1116160 Oct 23 21:42 result.tar.gz
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc      8782 Oct 23 21:42 runtime_log.err
[2025-10-23 21:42:41] -rw------- 1 boinc boinc       659 Oct 23 21:42 2yTKDmvMSV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMn2NDmyTSXUm.diag
[2025-10-23 21:42:41] -rw-r--r-- 1 boinc boinc     11817 Oct 23 21:42 stderr.txt
[2025-10-23 21:42:41] HITS file was successfully produced:
[2025-10-23 21:42:41] -rw------- 1 boinc boinc 202047871 Oct 23 21:41 shared/HITS.pool.root.1
[2025-10-23 21:42:41]  *** Contents of shared directory: ***
[2025-10-23 21:42:41] total 424416
[2025-10-23 21:42:41] -rw-r--r-- 2 boinc boinc 230830643 Oct 23 20:06 ATLAS.root_0
[2025-10-23 21:42:41] -rw-r--r-- 2 boinc boinc    569680 Oct 23 20:06 input.tar.gz
[2025-10-23 21:42:41] -rw-r--r-- 2 boinc boinc     15120 Oct 23 20:06 start_atlas.sh
[2025-10-23 21:42:41] -rw------- 1 boinc boinc 202047871 Oct 23 21:41 HITS.pool.root.1
[2025-10-23 21:42:41] -rw------- 1 boinc boinc   1116160 Oct 23 21:42 result.tar.gz
21:42:42 (1329710): run_atlas exited; CPU time 16488.384600
21:42:42 (1329710): called boinc_finish(0)

</stderr_txt>
]]>

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