Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-23 06:42:54 (8084): vboxwrapper version 26210
2025-10-23 06:42:54 (8084): BOINC client version: 8.2.5
2025-10-23 06:42:55 (8084): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-23 06:42:55 (8084): Successfully copied 'init_data.xml' to the shared directory.
2025-10-23 06:42:55 (8084): Create VM. (boinc_a56b7a6983048ed7, slot#1)
2025-10-23 06:42:56 (8084): Setting Memory Size for VM. (4300MB)
2025-10-23 06:42:56 (8084): Setting CPU Count for VM. (3)
2025-10-23 06:42:56 (8084): Setting Chipset Options for VM.
2025-10-23 06:42:56 (8084): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-23 06:42:57 (8084): Setting Boot Options for VM.
2025-10-23 06:42:57 (8084): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-23 06:42:57 (8084): Enabling VM Network Access.
2025-10-23 06:42:58 (8084): Disabling USB Support for VM.
2025-10-23 06:42:58 (8084): Disabling COM Port Support for VM.
2025-10-23 06:42:58 (8084): Disabling LPT Port Support for VM.
2025-10-23 06:42:58 (8084): Disabling Audio Support for VM.
2025-10-23 06:42:59 (8084): Disabling Clipboard Support for VM.
2025-10-23 06:42:59 (8084): Disabling Drag and Drop Support for VM.
2025-10-23 06:42:59 (8084): Adding storage controller(s) to VM.
2025-10-23 06:42:59 (8084): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-23 06:43:00 (8084): Adding VirtualBox Guest Additions to VM.
2025-10-23 06:43:00 (8084): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-23 06:43:00 (8084): forwarding host port 53117 to guest port 80
2025-10-23 06:43:01 (8084): Enabling remote desktop for VM.
2025-10-23 06:43:01 (8084): Enabling shared directory for VM.
2025-10-23 06:43:02 (8084): Starting VM using VBoxManage interface. (boinc_a56b7a6983048ed7, slot#1)
2025-10-23 06:43:07 (8084): Successfully started VM. (PID = '26916')
2025-10-23 06:43:07 (8084): Reporting VM Process ID to BOINC.
2025-10-23 06:43:07 (8084): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-23 06:43:07 (8084): Guest Log: CPUID EDX: 0x178bfbff
2025-10-23 06:43:07 (8084): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-23 06:43:07 (8084): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-23 06:43:07 (8084): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-23 06:43:07 (8084): Detected: Web Application Enabled (http://localhost:53117)
2025-10-23 06:43:07 (8084): Detected: Remote Desktop Enabled (localhost:53118)
2025-10-23 06:43:07 (8084): Preference change detected
2025-10-23 06:43:07 (8084): Setting CPU throttle for VM. (100%)
2025-10-23 06:43:07 (8084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-23 06:43:09 (8084): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-23 06:43:09 (8084): Guest Log: BIOS: Booting from Hard Disk...
2025-10-23 06:43:12 (8084): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-23 06:43:12 (8084): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-23 06:43:12 (8084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-23 06:43:16 (8084): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-23 06:43:16 (8084): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-23 06:43:19 (8084): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-23 06:43:19 (8084): Guest Log: 00:00:00.000079 main     Log opened 2025-10-23T06:43:17.755954000Z
2025-10-23 06:43:19 (8084): Guest Log: 00:00:00.000148 main     OS Product: Linux
2025-10-23 06:43:19 (8084): Guest Log: 00:00:00.000171 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-23 06:43:19 (8084): Guest Log: 00:00:00.000190 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-23 06:43:19 (8084): Guest Log: 00:00:00.000207 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-23 06:43:19 (8084): Guest Log: 00:00:00.000208 main     Process ID: 1287
2025-10-23 06:43:19 (8084): Guest Log: 00:00:00.000208 main     Package type: LINUX_64BITS_GENERIC
2025-10-23 06:43:19 (8084): Guest Log: 00:00:00.000687 main     5.2.32 r132073 started. Verbose level = 0
2025-10-23 06:43:19 (8084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-23 06:43:19 (8084): Guest Log: [INFO] Mounting shared directory
2025-10-23 06:43:19 (8084): Guest Log: [INFO] Checking for init_data.xml
2025-10-23 06:43:22 (8084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-23 06:43:22 (8084): Guest Log: [INFO] Detected branch: prod
2025-10-23 06:43:22 (8084): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-23 06:43:22 (8084): Guest Log: Copying input files
2025-10-23 06:43:23 (8084): Guest Log: Copied input files into RunAtlas.
2025-10-23 06:43:23 (8084): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-23 06:43:23 (8084): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-23 06:43:23 (8084): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-23 06:43:23 (8084): Guest Log: Further information can be found at the LHC@home message board.
2025-10-23 06:43:29 (8084): Guest Log: 00:00:10.008845 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 254 824 000ns (GuestNow=1 761 216 209 012 258 000 ns GuestLast=1 761 201 797 757 434 000 ns fSetTimeLastLoop=true )
2025-10-23 06:43:51 (8084): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-23 06:43:51 (8084): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-23 06:43:51 (8084): Guest Log: 2.6.3.0 1566 0 30072 152034 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-23 06:43:51 (8084): Guest Log: copied the webapp to /var/www
2025-10-23 06:43:51 (8084): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-23 06:43:51 (8084): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-23 06:43:51 (8084): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-23 06:43:51 (8084): Guest Log:  *** Starting ATLAS job. (PandaID=6853992252 taskID=46771637) ***
2025-10-23 08:23:09 (8084): Status Report: Elapsed Time: '6000.000000'
2025-10-23 08:23:09 (8084): Status Report: CPU Time: '17276.218750'
2025-10-23 09:27:37 (8084): Guest Log:  *** Job finished ***
2025-10-23 09:27:37 (8084): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:23,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:23,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:27,237 | INFO     | [monitor] cgroup control has ended
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:27,881 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809699841856)>', '<ExcThread(monitor, started 139808970110720)>']
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:28,209 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:28,209 | INFO     | [monitor] control thread has ended
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:32,886 | INFO     | all workflow threads have been joined
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:32,886 | INFO     | end of generic workflow (traces error code: 0)
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:32,886 | INFO     | traces error code: 0
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:32,886 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:32,952 [wrapper] ==== pilot stdout END ====
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:32,955 [wrapper] ==== wrapper stdout RESUME ====
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:32,958 [wrapper] pilotpid: 5953
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:32,961 [wrapper] Pilot exit status: 0
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:33,006 [wrapper] pandaids: 6853992252
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:33,024 [wrapper] cleanup supervisor_pilot  7834 5954
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:33,026 [wrapper] Test setup, not cleaning
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:33,030 [wrapper] apfmon messages muted
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:33,032 [wrapper] ==== wrapper stdout END ====
2025-10-23 09:27:37 (8084): Guest Log: 2025-10-23 13:27:33,035 [wrapper] ==== wrapper stderr END ====
2025-10-23 09:27:37 (8084): Guest Log:  *** Error codes and diagnostics ***
2025-10-23 09:27:37 (8084): Guest Log:     "exeErrorCode": 0,
2025-10-23 09:27:37 (8084): Guest Log:     "exeErrorDiag": "",
2025-10-23 09:27:37 (8084): Guest Log:     "pilotErrorCode": 0,
2025-10-23 09:27:37 (8084): Guest Log:     "pilotErrorDiag": "",
2025-10-23 09:27:37 (8084): Guest Log:  *** Listing of results directory ***
2025-10-23 09:27:37 (8084): Guest Log: total 207104
2025-10-23 09:27:37 (8084): Guest Log: -rw-r--r--. 1 atlas atlas    563267 Oct  7 07:02 pilot3.tar.gz
2025-10-23 09:27:37 (8084): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 23 00:40 queuedata.json
2025-10-23 09:27:37 (8084): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 23 00:44 runpilot2-wrapper.sh
2025-10-23 09:27:37 (8084): Guest Log: -rwxr-xr-x. 1 atlas atlas      9027 Oct 23 10:43 init_data.xml
2025-10-23 09:27:37 (8084): Guest Log: -rwxr-xr-x. 1 atlas atlas    576704 Oct 23 10:43 input.tar.gz
2025-10-23 09:27:37 (8084): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 23 10:43 start_atlas.sh
2025-10-23 09:27:37 (8084): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 23 10:43 EVNT.46771634._003938.pool.root.1 -> /data/./ATLAS.root_0
2025-10-23 09:27:37 (8084): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 23 10:43 pandaJob.out
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas    978119 Oct 23 10:44 agis_schedconf.cvmfs.json
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 23 10:44 agis_ddmendpoints.agis.ALL.json
2025-10-23 09:27:37 (8084): Guest Log: drwx------. 4 atlas atlas      4096 Oct 23 10:44 pilot3
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas 204916261 Oct 23 13:26 HITS.46771637._096866.pool.root.1
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas        95 Oct 23 13:26 pilot_heartbeat.json
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 23 13:26 memory_monitor_summary.json
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas    317268 Oct 23 13:26 log.46771637._096866.job.log.tgz.1
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas      7784 Oct 23 13:26 heartbeat.json
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 23 13:27 pilotlog.txt
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas   1338750 Oct 23 13:27 log.46771637._096866.job.log.1
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas       357 Oct 23 13:27 output.list
2025-10-23 09:27:37 (8084): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 23 13:27 runtime_log
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas   1679360 Oct 23 13:27 result.tar.gz
2025-10-23 09:27:37 (8084): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 23 13:27 runtime_log.err
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas       653 Oct 23 13:27 QTkKDmdcyV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdG7NDmqYIAom.diag
2025-10-23 09:27:37 (8084): Guest Log: Looking for outputfile HITS.46771637._096866.pool.root.1
2025-10-23 09:27:37 (8084): Guest Log: HITS file was successfully produced
2025-10-23 09:27:37 (8084): Guest Log: -rw-------. 1 atlas atlas 204916261 Oct 23 13:26 /home/atlas/RunAtlas/HITS.46771637._096866.pool.root.1
2025-10-23 09:27:38 (8084): Guest Log: Successfully finished the ATLAS job!
2025-10-23 09:27:38 (8084): Guest Log: Copying the results back to the shared directory!
2025-10-23 09:27:38 (8084): Guest Log:  *** Contents of shared directory: ***
2025-10-23 09:27:38 (8084): Guest Log: total 424416
2025-10-23 09:27:38 (8084): Guest Log: -rwxrwxrwx. 1 root root 227396529 Oct 23 10:42 ATLAS.root_0
2025-10-23 09:27:38 (8084): Guest Log: -rwxrwxrwx. 1 root root 204916261 Oct 23  2025 HITS.pool.root.1
2025-10-23 09:27:38 (8084): Guest Log: -rwxrwxrwx. 1 root root      9027 Oct 23 10:42 init_data.xml
2025-10-23 09:27:38 (8084): Guest Log: -rwxrwxrwx. 1 root root    576704 Oct 23 09:44 input.tar.gz
2025-10-23 09:27:38 (8084): Guest Log: -rwxrwxrwx. 1 root root   1679360 Oct 23  2025 result.tar.gz
2025-10-23 09:27:38 (8084): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 23 09:44 start_atlas.sh
2025-10-23 09:27:38 (8084): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-23 09:27:38 (8084): VM Completion File Detected.
2025-10-23 09:27:38 (8084): Powering off VM.
2025-10-23 09:27:39 (8084): Successfully stopped VM.
2025-10-23 09:27:39 (8084): Deregistering VM. (boinc_a56b7a6983048ed7, slot#1)
2025-10-23 09:27:39 (8084): Removing network bandwidth throttle group from VM.
2025-10-23 09:27:39 (8084): Removing VM from VirtualBox.
2025-10-23 09:27:44 (8084): called boinc_finish(0)

</stderr_txt>
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