Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:23:24 (14294): wrapper (7.7.26015): starting
19:23:24 (14294): wrapper: running run_atlas (--nthreads 8)
[2025-10-23 19:23:24] Arguments: --nthreads 8
[2025-10-23 19:23:24] Threads: 8
[2025-10-23 19:23:24] Checking for CVMFS
[2025-10-23 19:23:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-23 19:23:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-23 19:23:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-23 19:23:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-23 19:23:27] 2.11.2.0 19969 34053 84500 152044 3 60 13294420 25165825 4632 130560 0 11990302 99.954 3548940 1419 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-23 19:23:27] CVMFS is ok
[2025-10-23 19:23:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-23 19:23:27] Checking for apptainer binary...
[2025-10-23 19:23:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-23 19:23:27] Running /usr/bin/apptainer --version
[2025-10-23 19:23:27] apptainer version 1.3.2-1.el7
[2025-10-23 19:23:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-23 19:23:31] cg-vwn469.simple-grid.lan
[2025-10-23 19:23:31] apptainer works
[2025-10-23 19:23:31] Set ATHENA_PROC_NUMBER=8
[2025-10-23 19:23:31] Set ATHENA_CORE_NUMBER=8
[2025-10-23 19:23:31] Starting ATLAS job with PandaID=6853860452
[2025-10-23 19:23:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-23 23:44:31]  *** The last 200 lines of the pilot log: ***
[2025-10-23 23:44:31] 2025-10-23 21:43:24,088 | INFO     | sum of square deviations: 4449281562.0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,090 | INFO     | sum of deviations: 64311044864.000015
[2025-10-23 23:44:31] 2025-10-23 21:43:24,090 | INFO     | mean x: 1761248290.0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,090 | INFO     | mean y: 2457815.4403292183
[2025-10-23 23:44:31] 2025-10-23 21:43:24,090 | INFO     | -- intersect: -25455071948.964657
[2025-10-23 23:44:31] 2025-10-23 21:43:24,090 | INFO     | intersect: -25455071948.964657
[2025-10-23 23:44:31] 2025-10-23 21:43:24,091 | INFO     | chi2: 5.6071524089458595
[2025-10-23 23:44:31] 2025-10-23 21:43:24,091 | INFO     | sum of square deviations: 4180243959.5
[2025-10-23 23:44:31] 2025-10-23 21:43:24,093 | INFO     | sum of deviations: 78844681024.50002
[2025-10-23 23:44:31] 2025-10-23 21:43:24,093 | INFO     | mean x: 1761248137.5
[2025-10-23 23:44:31] 2025-10-23 21:43:24,093 | INFO     | mean y: 2465901.3571428573
[2025-10-23 23:44:31] 2025-10-23 21:43:24,093 | INFO     | -- intersect: -33216898554.776638
[2025-10-23 23:44:31] 2025-10-23 21:43:24,093 | INFO     | intersect: -33216898554.776638
[2025-10-23 23:44:31] 2025-10-23 21:43:24,094 | INFO     | chi2: 4.880052661185333
[2025-10-23 23:44:31] 2025-10-23 21:43:24,094 | INFO     | current chi2=4.880052661185333 (change=12.967361946511108 %)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,094 | INFO     | right removable region: 237
[2025-10-23 23:44:31] 2025-10-23 21:43:24,094 | INFO     | sum of square deviations: 4180243959.5
[2025-10-23 23:44:31] 2025-10-23 21:43:24,096 | INFO     | sum of deviations: -16220562246.500002
[2025-10-23 23:44:31] 2025-10-23 21:43:24,096 | INFO     | mean x: 1761248442.5
[2025-10-23 23:44:31] 2025-10-23 21:43:24,096 | INFO     | mean y: 2503393.5168067226
[2025-10-23 23:44:31] 2025-10-23 21:43:24,096 | INFO     | -- intersect: 6836659550.407589
[2025-10-23 23:44:31] 2025-10-23 21:43:24,096 | INFO     | intersect: 6836659550.407589
[2025-10-23 23:44:31] 2025-10-23 21:43:24,097 | INFO     | chi2: 1.3091357002305148
[2025-10-23 23:44:31] 2025-10-23 21:43:24,097 | INFO     | current chi2=1.3091357002305148 (change=76.65239671135261 %)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,097 | INFO     | sum of square deviations: 3922276332.0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,099 | INFO     | sum of deviations: -34018753889.999996
[2025-10-23 23:44:31] 2025-10-23 21:43:24,099 | INFO     | mean x: 1761248595.0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,099 | INFO     | mean y: 2513806.2145922747
[2025-10-23 23:44:31] 2025-10-23 21:43:24,099 | INFO     | -- intersect: 15278205119.340889
[2025-10-23 23:44:31] 2025-10-23 21:43:24,100 | INFO     | intersect: 15278205119.340889
[2025-10-23 23:44:31] 2025-10-23 21:43:24,100 | INFO     | chi2: 0.9140148449685904
[2025-10-23 23:44:31] 2025-10-23 21:43:24,100 | INFO     | current chi2=0.9140148449685904 (change=30.181810425943688 %)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,100 | INFO     | sum of square deviations: 3675146117.0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,110 | INFO     | sum of deviations: -29933685485.5
[2025-10-23 23:44:31] 2025-10-23 21:43:24,111 | INFO     | mean x: 1761248747.5
[2025-10-23 23:44:31] 2025-10-23 21:43:24,111 | INFO     | mean y: 2511258.1885964912
[2025-10-23 23:44:31] 2025-10-23 21:43:24,111 | INFO     | -- intersect: 14347700372.038408
[2025-10-23 23:44:31] 2025-10-23 21:43:24,111 | INFO     | intersect: 14347700372.038408
[2025-10-23 23:44:31] 2025-10-23 21:43:24,111 | INFO     | chi2: 0.9004204045182123
[2025-10-23 23:44:31] 2025-10-23 21:43:24,111 | INFO     | current chi2=0.9004204045182123 (change=1.4873325663376211 %)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,111 | INFO     | left removable region: 30
[2025-10-23 23:44:31] 2025-10-23 21:43:24,112 | INFO     | sum of square deviations: 2750295288.0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,113 | INFO     | sum of deviations: 5744528844.000001
[2025-10-23 23:44:31] 2025-10-23 21:43:24,113 | INFO     | mean x: 1761249022.0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,113 | INFO     | mean y: 2506886.652173913
[2025-10-23 23:44:31] 2025-10-23 21:43:24,114 | INFO     | -- intersect: -3676205669.228768
[2025-10-23 23:44:31] 2025-10-23 21:43:24,114 | INFO     | intersect: -3676205669.228768
[2025-10-23 23:44:31] 2025-10-23 21:43:24,114 | INFO     | chi2: 0.0009562962538912541
[2025-10-23 23:44:31] 2025-10-23 21:43:24,114 | INFO     | -- intersect: -3676205669.228768
[2025-10-23 23:44:31] 2025-10-23 21:43:24,114 | INFO     | current memory leak: 2.09 B/s (using 207 data points, chi2=0.00)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,115 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,115 | INFO     | ..............................
[2025-10-23 23:44:31] 2025-10-23 21:43:24,115 | INFO     | . Timing measurements:
[2025-10-23 23:44:31] 2025-10-23 21:43:24,115 | INFO     | . get job = 0 s
[2025-10-23 23:44:31] 2025-10-23 21:43:24,115 | INFO     | . initial setup = 9 s
[2025-10-23 23:44:31] 2025-10-23 21:43:24,116 | INFO     | . payload setup = 129 s
[2025-10-23 23:44:31] 2025-10-23 21:43:24,116 | INFO     | . stage-in = 0 s
[2025-10-23 23:44:31] 2025-10-23 21:43:24,116 | INFO     | . payload execution = 14959 s
[2025-10-23 23:44:31] 2025-10-23 21:43:24,116 | INFO     | . stage-out = 3 s
[2025-10-23 23:44:31] 2025-10-23 21:43:24,116 | INFO     | . log creation = 0 s
[2025-10-23 23:44:31] 2025-10-23 21:43:24,116 | INFO     | ..............................
[2025-10-23 23:44:31] 2025-10-23 21:43:24,291 | INFO     | 
[2025-10-23 23:44:31] 2025-10-23 21:43:24,291 | INFO     | job summary report
[2025-10-23 23:44:31] 2025-10-23 21:43:24,291 | INFO     | --------------------------------------------------
[2025-10-23 23:44:31] 2025-10-23 21:43:24,291 | INFO     | PanDA job id: 6853860452
[2025-10-23 23:44:31] 2025-10-23 21:43:24,291 | INFO     | task id: 46771637
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | errors: (none)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | pilot state: finished 
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | transexitcode: 0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | exeerrorcode: 0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | exeerrordiag: 
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | exitcode: 0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | exitmsg: OK
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | cpuconsumptiontime: 56490 s
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | nevents: 400
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | neventsw: 0
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | pid: 24644
[2025-10-23 23:44:31] 2025-10-23 21:43:24,292 | INFO     | pgrp: 24644
[2025-10-23 23:44:31] 2025-10-23 21:43:24,293 | INFO     | corecount: 8
[2025-10-23 23:44:31] 2025-10-23 21:43:24,293 | INFO     | event service: False
[2025-10-23 23:44:31] 2025-10-23 21:43:24,293 | INFO     | sizes: {0: 2348103, 1: 2348789, 2: 2348988, 13: 2348988, 23: 2349044, 34: 2349072, 45: 2349228, 55: 2349256, 66: 2349284, 77: 2349312, 88: 2349368, 94: 2349938, 98
[2025-10-23 23:44:31] 2025-10-23 21:43:24,293 | INFO     | --------------------------------------------------
[2025-10-23 23:44:31] 2025-10-23 21:43:24,293 | INFO     | 
[2025-10-23 23:44:31] 2025-10-23 21:43:24,293 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-10-23 23:44:31] 2025-10-23 21:43:24,614 | INFO     | time since job start (15387s) is within the limit (172800.0s)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,855 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,856 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | job 6853860452 has completed (purged errors)
[2025-10-23 23:44:31] 2025-10-23 21:43:24,857 | INFO     | overall cleanup function is called
[2025-10-23 23:44:31] 2025-10-23 21:43:25,867 | INFO     | --- collectZombieJob: --- 10, [24644]
[2025-10-23 23:44:31] 2025-10-23 21:43:25,867 | INFO     | zombie collector waiting for pid 24644
[2025-10-23 23:44:31] 2025-10-23 21:43:25,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-23 23:44:31] 2025-10-23 21:43:25,867 | INFO     | collected zombie processes
[2025-10-23 23:44:31] 2025-10-23 21:43:25,868 | INFO     | will attempt to kill all subprocesses of pid=24644
[2025-10-23 23:44:31] 2025-10-23 21:43:25,987 | INFO     | process IDs to be killed: [24644] (in reverse order)
[2025-10-23 23:44:31] 2025-10-23 21:43:27,040 | WARNING  | found no corresponding commands to process id(s)
[2025-10-23 23:44:31] 2025-10-23 21:43:27,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-23 23:44:31] 2025-10-23 21:43:27,044 | INFO     | did not find any defunct processes belonging to 24644
[2025-10-23 23:44:31] 2025-10-23 21:43:27,046 | INFO     | did not find any defunct processes belonging to 24644
[2025-10-23 23:44:31] 2025-10-23 21:43:27,046 | INFO     | ready for new job
[2025-10-23 23:44:31] 2025-10-23 21:43:27,047 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-23 23:44:31] 2025-10-23 21:43:27,049 | INFO     | ***************************************
[2025-10-23 23:44:31] 2025-10-23 21:43:27,049 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-23 23:44:31] 2025-10-23 21:43:27,049 | INFO     | ***************************************
[2025-10-23 23:44:31] 2025-10-23 21:43:27,049 | INFO     | 
[2025-10-23 23:44:31] 2025-10-23 21:43:27,050 | INFO     | pilot is running in a VM
[2025-10-23 23:44:31] 2025-10-23 21:43:27,050 | INFO     | architecture information:
[2025-10-23 23:44:31] 2025-10-23 21:43:27,071 | INFO     | executing command: cat /etc/os-release
[2025-10-23 23:44:31] 2025-10-23 21:43:27,350 | INFO     | cat /etc/os-release:
[2025-10-23 23:44:31] NAME="CentOS Linux"
[2025-10-23 23:44:31] VERSION="7 (Core)"
[2025-10-23 23:44:31] ID="centos"
[2025-10-23 23:44:31] ID_LIKE="rhel fedora"
[2025-10-23 23:44:31] VERSION_ID="7"
[2025-10-23 23:44:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-23 23:44:31] ANSI_COLOR="0;31"
[2025-10-23 23:44:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-23 23:44:31] HOME_URL="https://www.centos.org/"
[2025-10-23 23:44:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-23 23:44:31] 
[2025-10-23 23:44:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-23 23:44:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-23 23:44:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-23 23:44:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-23 23:44:31] 
[2025-10-23 23:44:31] 2025-10-23 21:43:27,351 | INFO     | ***************************************
[2025-10-23 23:44:31] 2025-10-23 21:43:27,854 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-10-23 23:44:31] 2025-10-23 21:43:28,082 | INFO     | sufficient remaining disk space (496300457984 B)
[2025-10-23 23:44:31] 2025-10-23 21:43:28,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-23 23:44:31] 2025-10-23 21:43:28,082 | INFO     | current server update state: UPDATING_FINAL
[2025-10-23 23:44:31] 2025-10-23 21:43:28,083 | INFO     | update_server=False
[2025-10-23 23:44:31] 2025-10-23 21:43:28,083 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-23 23:44:31] 2025-10-23 21:43:28,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-23 23:44:31] 2025-10-23 21:43:28,452 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-23 23:44:31] 2025-10-23 21:43:28,452 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-23 23:44:31] 2025-10-23 21:43:28,452 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-23 23:44:31] 2025-10-23 21:43:28,452 | INFO     | will abort loop
[2025-10-23 23:44:31] 2025-10-23 21:43:28,486 | INFO     | all data control threads have been joined
[2025-10-23 23:44:31] 2025-10-23 21:43:28,607 | INFO     | all payload control threads have been joined
[2025-10-23 23:44:31] 2025-10-23 21:43:28,947 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-23 23:44:31] 2025-10-23 21:43:29,089 | INFO     | [job] retrieve thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,168 | INFO     | [job] validate thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,169 | INFO     | [job] create_data_payload thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,299 | INFO     | [payload] validate_pre thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,308 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-23 23:44:31] 2025-10-23 21:43:29,352 | INFO     | [payload] failed_post thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,451 | INFO     | [payload] validate_post thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,454 | INFO     | all job control threads have been joined
[2025-10-23 23:44:31] 2025-10-23 21:43:29,458 | INFO     | [job] job monitor thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,492 | INFO     | [data] control thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,507 | INFO     | [payload] execute_payloads thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,613 | INFO     | [payload] control thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,765 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:29,802 | INFO     | [data] copytool_in thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:30,314 | INFO     | [job] queue monitor thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:30,462 | INFO     | [job] control thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:30,954 | INFO     | [data] copytool_out thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:32,094 | INFO     | [data] queue_monitor thread has finished
[2025-10-23 23:44:31] 2025-10-23 21:43:57,851 | INFO     | PID=18051 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-23 23:44:31] 2025-10-23 21:43:57,851 | INFO     | .. there are 9 such processes running
[2025-10-23 23:44:31] 2025-10-23 21:43:57,852 | INFO     | found 0 job(s) in 20 queues
[2025-10-23 23:44:31] 2025-10-23 21:43:57,852 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-23 23:44:31] 2025-10-23 21:43:57,852 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-23 23:44:31] 2025-10-23 21:44:23,363 | INFO     | [monitor] cgroup control has ended
[2025-10-23 23:44:31] 2025-10-23 21:44:24,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140495278479168)>', '<ExcThread(monitor, started 140494545872640)>']
[2025-10-23 23:44:31] 2025-10-23 21:44:25,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-23 23:44:31] 2025-10-23 21:44:25,016 | INFO     | [monitor] control thread has ended
[2025-10-23 23:44:31] 2025-10-23 21:44:29,361 | INFO     | all workflow threads have been joined
[2025-10-23 23:44:31] 2025-10-23 21:44:29,361 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-23 23:44:31] 2025-10-23 21:44:29,361 | INFO     | traces error code: 0
[2025-10-23 23:44:31] 2025-10-23 21:44:29,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-23 23:44:31] 2025-10-23 21:44:29,607 [wrapper] ==== pilot stdout END ====
[2025-10-23 23:44:31] 2025-10-23 21:44:29,657 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-23 23:44:31] 2025-10-23 21:44:29,703 [wrapper] pilotpid: 18051
[2025-10-23 23:44:31] 2025-10-23 21:44:29,741 [wrapper] Pilot exit status: 0
[2025-10-23 23:44:31] 2025-10-23 21:44:29,833 [wrapper] pandaids: 6853860452
[2025-10-23 23:44:31] 2025-10-23 21:44:30,440 [wrapper] cleanup supervisor_pilot 19064 18052
[2025-10-23 23:44:31] 2025-10-23 21:44:30,454 [wrapper] Test setup, not cleaning
[2025-10-23 23:44:31] 2025-10-23 21:44:30,465 [wrapper] apfmon messages muted
[2025-10-23 23:44:31] 2025-10-23 21:44:30,469 [wrapper] ==== wrapper stdout END ====
[2025-10-23 23:44:31] 2025-10-23 21:44:30,476 [wrapper] ==== wrapper stderr END ====
[2025-10-23 23:44:31]  *** Error codes and diagnostics ***
[2025-10-23 23:44:31]     "exeErrorCode": 0,
[2025-10-23 23:44:31]     "exeErrorDiag": "",
[2025-10-23 23:44:31]     "pilotErrorCode": 0,
[2025-10-23 23:44:31]     "pilotErrorDiag": "",
[2025-10-23 23:44:31]  *** Listing of results directory ***
[2025-10-23 23:44:31] total 435844
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc    557409 Oct 22 23:01 pilot3.tar.gz
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc      5112 Oct 22 23:31 queuedata.json
[2025-10-23 23:44:31] -rwx------. 1 boinc boinc     36292 Oct 22 23:33 runpilot2-wrapper.sh
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc       100 Oct 23 19:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-23 23:44:31] -rwxr-xr-x. 1 boinc boinc      7986 Oct 23 19:23 run_atlas
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc       105 Oct 23 19:23 job.xml
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc      6393 Oct 23 19:23 init_data.xml
[2025-10-23 23:44:31] -rw-r--r--. 2 boinc boinc 230839058 Oct 23 19:23 EVNT.46771634._003833.pool.root.1
[2025-10-23 23:44:31] -rw-r--r--. 2 boinc boinc     15120 Oct 23 19:23 start_atlas.sh
[2025-10-23 23:44:31] drwxrwx--x. 2 boinc boinc        68 Oct 23 19:23 shared
[2025-10-23 23:44:31] -rw-r--r--. 2 boinc boinc    569681 Oct 23 19:23 input.tar.gz
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc         0 Oct 23 19:23 boinc_lockfile
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc      2560 Oct 23 19:23 pandaJob.out
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc    977777 Oct 23 19:26 agis_schedconf.cvmfs.json
[2025-10-23 23:44:31] drwx------. 5 boinc boinc      4096 Oct 23 19:26 pilot3
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc 206506345 Oct 23 23:40 HITS.46771637._094209.pool.root.1
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc       531 Oct 23 23:40 boinc_task_state.xml
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc      1016 Oct 23 23:41 memory_monitor_summary.json
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc   1560740 Oct 23 23:41 agis_ddmendpoints.agis.ALL.json
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc    475137 Oct 23 23:41 log.46771637._094209.job.log.tgz.1
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc      7776 Oct 23 23:43 heartbeat.json
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc        95 Oct 23 23:43 pilot_heartbeat.json
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc      8192 Oct 23 23:44 boinc_mmap_file
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc        28 Oct 23 23:44 wrapper_checkpoint.txt
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc      5071 Oct 23 23:44 pilotlog.txt
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc   2058642 Oct 23 23:44 log.46771637._094209.job.log.1
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc       357 Oct 23 23:44 output.list
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc       620 Oct 23 23:44 runtime_log
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc   2549760 Oct 23 23:44 result.tar.gz
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc      8717 Oct 23 23:44 runtime_log.err
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc       656 Oct 23 23:44 lQlLDmidvV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmQiMDmtvPJMn.diag
[2025-10-23 23:44:31] -rw-r--r--. 1 boinc boinc     20691 Oct 23 23:44 stderr.txt
[2025-10-23 23:44:31] HITS file was successfully produced:
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc 206506345 Oct 23 23:40 shared/HITS.pool.root.1
[2025-10-23 23:44:31]  *** Contents of shared directory: ***
[2025-10-23 23:44:31] total 430168
[2025-10-23 23:44:31] -rw-r--r--. 2 boinc boinc 230839058 Oct 23 19:23 ATLAS.root_0
[2025-10-23 23:44:31] -rw-r--r--. 2 boinc boinc     15120 Oct 23 19:23 start_atlas.sh
[2025-10-23 23:44:31] -rw-r--r--. 2 boinc boinc    569681 Oct 23 19:23 input.tar.gz
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc 206506345 Oct 23 23:40 HITS.pool.root.1
[2025-10-23 23:44:31] -rw-------. 1 boinc boinc   2549760 Oct 23 23:44 result.tar.gz
23:44:33 (14294): run_atlas exited; CPU time 56680.687514
23:44:33 (14294): called boinc_finish(0)

</stderr_txt>
]]>

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