Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:10:07 (3702): wrapper (7.7.26015): starting
16:10:07 (3702): wrapper: running run_atlas (--nthreads 8)
[2025-10-23 16:10:07] Arguments: --nthreads 8
[2025-10-23 16:10:07] Threads: 8
[2025-10-23 16:10:07] Checking for CVMFS
[2025-10-23 16:10:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-23 16:10:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-23 16:10:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-23 16:10:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-23 16:10:10] 2.11.2.0 18345 236445 139136 152039 3 60 21021874 25165825 4632 130560 0 111508331 99.898 66000581 3021 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-23 16:10:10] CVMFS is ok
[2025-10-23 16:10:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-23 16:10:10] Checking for apptainer binary...
[2025-10-23 16:10:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-23 16:10:10] Running /usr/bin/apptainer --version
[2025-10-23 16:10:10] apptainer version 1.3.2-1.el7
[2025-10-23 16:10:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-23 16:10:31] cg-vwn239.simple-grid.lan
[2025-10-23 16:10:31] apptainer works
[2025-10-23 16:10:31] Set ATHENA_PROC_NUMBER=8
[2025-10-23 16:10:31] Set ATHENA_CORE_NUMBER=8
[2025-10-23 16:10:31] Starting ATLAS job with PandaID=6854097699
[2025-10-23 16:10:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-23 20:59:50]  *** The last 200 lines of the pilot log: ***
[2025-10-23 20:59:50] 2025-10-23 18:58:51,980 | INFO     | sum of deviations: 29333192182.99994
[2025-10-23 20:59:50] 2025-10-23 18:58:51,987 | INFO     | mean x: 1761237572.0
[2025-10-23 20:59:50] 2025-10-23 18:58:51,987 | INFO     | mean y: 2486493.177121771
[2025-10-23 20:59:50] 2025-10-23 18:58:51,987 | INFO     | -- intersect: -8368890229.092099
[2025-10-23 20:59:50] 2025-10-23 18:58:51,987 | INFO     | intersect: -8368890229.092099
[2025-10-23 20:59:50] 2025-10-23 18:58:51,988 | INFO     | chi2: 5.795334668969068
[2025-10-23 20:59:50] 2025-10-23 18:58:51,988 | INFO     | sum of square deviations: 5836025702.5
[2025-10-23 20:59:50] 2025-10-23 18:58:51,991 | INFO     | sum of deviations: 46662010878.0
[2025-10-23 20:59:50] 2025-10-23 18:58:51,991 | INFO     | mean x: 1761237419.5
[2025-10-23 20:59:50] 2025-10-23 18:58:51,991 | INFO     | mean y: 2494252.2706766916
[2025-10-23 20:59:50] 2025-10-23 18:58:51,991 | INFO     | -- intersect: -14079499867.845118
[2025-10-23 20:59:50] 2025-10-23 18:58:51,991 | INFO     | intersect: -14079499867.845118
[2025-10-23 20:59:50] 2025-10-23 18:58:51,992 | INFO     | chi2: 5.0676386171868755
[2025-10-23 20:59:50] 2025-10-23 18:58:51,992 | INFO     | current chi2=5.0676386171868755 (change=12.55658375828781 %)
[2025-10-23 20:59:50] 2025-10-23 18:58:51,992 | INFO     | right removable region: 265
[2025-10-23 20:59:50] 2025-10-23 18:58:51,992 | INFO     | sum of square deviations: 5836025702.5
[2025-10-23 20:59:50] 2025-10-23 18:58:51,995 | INFO     | sum of deviations: -62878442204.5
[2025-10-23 20:59:50] 2025-10-23 18:58:51,995 | INFO     | mean x: 1761237724.5
[2025-10-23 20:59:50] 2025-10-23 18:58:51,995 | INFO     | mean y: 2528381.7330827066
[2025-10-23 20:59:50] 2025-10-23 18:58:51,995 | INFO     | -- intersect: 18978435979.41871
[2025-10-23 20:59:50] 2025-10-23 18:58:51,995 | INFO     | intersect: 18978435979.41871
[2025-10-23 20:59:50] 2025-10-23 18:58:51,996 | INFO     | chi2: 1.3965970690316794
[2025-10-23 20:59:50] 2025-10-23 18:58:51,996 | INFO     | current chi2=1.3965970690316794 (change=75.90135602505042 %)
[2025-10-23 20:59:50] 2025-10-23 18:58:51,997 | INFO     | sum of square deviations: 5513070810.0
[2025-10-23 20:59:50] 2025-10-23 18:58:51,999 | INFO     | sum of deviations: -82130483448.0
[2025-10-23 20:59:50] 2025-10-23 18:58:51,999 | INFO     | mean x: 1761237877.0
[2025-10-23 20:59:50] 2025-10-23 18:58:51,999 | INFO     | mean y: 2537396.222222222
[2025-10-23 20:59:50] 2025-10-23 18:58:51,999 | INFO     | -- intersect: 26240422467.924965
[2025-10-23 20:59:50] 2025-10-23 18:58:51,999 | INFO     | intersect: 26240422467.924965
[2025-10-23 20:59:50] 2025-10-23 18:58:52,000 | INFO     | chi2: 1.0359694498260428
[2025-10-23 20:59:50] 2025-10-23 18:58:52,000 | INFO     | current chi2=1.0359694498260428 (change=25.821879996903846 %)
[2025-10-23 20:59:50] 2025-10-23 18:58:52,001 | INFO     | sum of square deviations: 5202255680.0
[2025-10-23 20:59:50] 2025-10-23 18:58:52,003 | INFO     | sum of deviations: -77587956523.5
[2025-10-23 20:59:50] 2025-10-23 18:58:52,003 | INFO     | mean x: 1761238029.5
[2025-10-23 20:59:50] 2025-10-23 18:58:52,003 | INFO     | mean y: 2535148.24609375
[2025-10-23 20:59:50] 2025-10-23 18:58:52,003 | INFO     | -- intersect: 26270152133.265335
[2025-10-23 20:59:50] 2025-10-23 18:58:52,003 | INFO     | intersect: 26270152133.265335
[2025-10-23 20:59:50] 2025-10-23 18:58:52,004 | INFO     | chi2: 1.0263830555951718
[2025-10-23 20:59:50] 2025-10-23 18:58:52,004 | INFO     | current chi2=1.0263830555951718 (change=0.9253549158694452 %)
[2025-10-23 20:59:50] 2025-10-23 18:58:52,004 | INFO     | left removable region: 30
[2025-10-23 20:59:50] 2025-10-23 18:58:52,004 | INFO     | sum of square deviations: 4024149870.0
[2025-10-23 20:59:50] 2025-10-23 18:58:52,013 | INFO     | sum of deviations: -34358184547.0
[2025-10-23 20:59:50] 2025-10-23 18:58:52,013 | INFO     | mean x: 1761238304.0
[2025-10-23 20:59:50] 2025-10-23 18:58:52,013 | INFO     | mean y: 2530641.4340425534
[2025-10-23 20:59:50] 2025-10-23 18:58:52,013 | INFO     | -- intersect: 15039980198.469872
[2025-10-23 20:59:50] 2025-10-23 18:58:52,013 | INFO     | intersect: 15039980198.469872
[2025-10-23 20:59:50] 2025-10-23 18:58:52,014 | INFO     | chi2: 0.1927951432366222
[2025-10-23 20:59:50] 2025-10-23 18:58:52,014 | INFO     | -- intersect: 15039980198.469872
[2025-10-23 20:59:50] 2025-10-23 18:58:52,014 | INFO     | current memory leak: -8.54 B/s (using 235 data points, chi2=0.19)
[2025-10-23 20:59:50] 2025-10-23 18:58:52,015 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-23 20:59:50] 2025-10-23 18:58:52,015 | INFO     | ..............................
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | . Timing measurements:
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | . get job = 0 s
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | . initial setup = 14 s
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | . payload setup = 130 s
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | . stage-in = 0 s
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | . payload execution = 16642 s
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | . stage-out = 3 s
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | . log creation = 1 s
[2025-10-23 20:59:50] 2025-10-23 18:58:52,016 | INFO     | ..............................
[2025-10-23 20:59:50] 2025-10-23 18:58:52,164 | INFO     | 
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | job summary report
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | --------------------------------------------------
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | PanDA job id: 6854097699
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | task id: 46771637
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | errors: (none)
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | pilot state: finished 
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | transexitcode: 0
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | exeerrorcode: 0
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | exeerrordiag: 
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | exitcode: 0
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | exitmsg: OK
[2025-10-23 20:59:50] 2025-10-23 18:58:52,165 | INFO     | cpuconsumptiontime: 61180 s
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | nevents: 400
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | neventsw: 0
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | pid: 14058
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | pgrp: 14058
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | corecount: 8
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | event service: False
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | sizes: {0: 2348053, 1: 2348738, 2: 2348937, 13: 2348937, 24: 2348993, 34: 2349021, 45: 2349177, 56: 2349205, 66: 2349233, 77: 2349261, 88: 2349317, 93: 2349887, 99
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | --------------------------------------------------
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | 
[2025-10-23 20:59:50] 2025-10-23 18:58:52,166 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-23 20:59:50] 2025-10-23 18:58:52,392 | INFO     | time since job start (17080s) is within the limit (172800.0s)
[2025-10-23 20:59:50] 2025-10-23 18:58:52,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,507 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,507 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,508 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-23 20:59:50] 2025-10-23 18:58:52,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-23 20:59:50] 2025-10-23 18:58:52,509 | INFO     | job 6854097699 has completed (purged errors)
[2025-10-23 20:59:50] 2025-10-23 18:58:52,509 | INFO     | overall cleanup function is called
[2025-10-23 20:59:50] 2025-10-23 18:58:53,520 | INFO     | --- collectZombieJob: --- 10, [14058]
[2025-10-23 20:59:50] 2025-10-23 18:58:53,520 | INFO     | zombie collector waiting for pid 14058
[2025-10-23 20:59:50] 2025-10-23 18:58:53,520 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-23 20:59:50] 2025-10-23 18:58:53,520 | INFO     | collected zombie processes
[2025-10-23 20:59:50] 2025-10-23 18:58:53,520 | INFO     | will attempt to kill all subprocesses of pid=14058
[2025-10-23 20:59:50] 2025-10-23 18:58:53,643 | INFO     | process IDs to be killed: [14058] (in reverse order)
[2025-10-23 20:59:50] 2025-10-23 18:58:54,216 | WARNING  | found no corresponding commands to process id(s)
[2025-10-23 20:59:50] 2025-10-23 18:58:54,216 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-23 20:59:50] 2025-10-23 18:58:54,219 | INFO     | did not find any defunct processes belonging to 14058
[2025-10-23 20:59:50] 2025-10-23 18:58:54,222 | INFO     | did not find any defunct processes belonging to 14058
[2025-10-23 20:59:50] 2025-10-23 18:58:54,222 | INFO     | ready for new job
[2025-10-23 20:59:50] 2025-10-23 18:58:54,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-23 20:59:50] 2025-10-23 18:58:54,225 | INFO     | ***************************************
[2025-10-23 20:59:50] 2025-10-23 18:58:54,225 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-23 20:59:50] 2025-10-23 18:58:54,225 | INFO     | ***************************************
[2025-10-23 20:59:50] 2025-10-23 18:58:54,225 | INFO     | 
[2025-10-23 20:59:50] 2025-10-23 18:58:54,226 | INFO     | pilot is running in a VM
[2025-10-23 20:59:50] 2025-10-23 18:58:54,226 | INFO     | architecture information:
[2025-10-23 20:59:50] 2025-10-23 18:58:54,242 | INFO     | executing command: cat /etc/os-release
[2025-10-23 20:59:50] 2025-10-23 18:58:54,472 | INFO     | cat /etc/os-release:
[2025-10-23 20:59:50] NAME="CentOS Linux"
[2025-10-23 20:59:50] VERSION="7 (Core)"
[2025-10-23 20:59:50] ID="centos"
[2025-10-23 20:59:50] ID_LIKE="rhel fedora"
[2025-10-23 20:59:50] VERSION_ID="7"
[2025-10-23 20:59:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-23 20:59:50] ANSI_COLOR="0;31"
[2025-10-23 20:59:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-23 20:59:50] HOME_URL="https://www.centos.org/"
[2025-10-23 20:59:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-23 20:59:50] 
[2025-10-23 20:59:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-23 20:59:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-23 20:59:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-23 20:59:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-23 20:59:50] 
[2025-10-23 20:59:50] 2025-10-23 18:58:54,472 | INFO     | ***************************************
[2025-10-23 20:59:50] 2025-10-23 18:58:54,976 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-23 20:59:50] 2025-10-23 18:58:55,213 | INFO     | sufficient remaining disk space (496782802944 B)
[2025-10-23 20:59:50] 2025-10-23 18:58:55,214 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-23 20:59:50] 2025-10-23 18:58:55,214 | INFO     | current server update state: UPDATING_FINAL
[2025-10-23 20:59:50] 2025-10-23 18:58:55,214 | INFO     | update_server=False
[2025-10-23 20:59:50] 2025-10-23 18:58:55,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-23 20:59:50] 2025-10-23 18:58:55,424 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-23 20:59:50] 2025-10-23 18:58:55,424 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-23 20:59:50] 2025-10-23 18:58:55,424 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-23 20:59:50] 2025-10-23 18:58:55,424 | INFO     | will abort loop
[2025-10-23 20:59:50] 2025-10-23 18:58:55,561 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-23 20:59:50] 2025-10-23 18:58:56,008 | INFO     | all data control threads have been joined
[2025-10-23 20:59:50] 2025-10-23 18:58:56,173 | INFO     | all payload control threads have been joined
[2025-10-23 20:59:50] 2025-10-23 18:58:56,220 | INFO     | [job] retrieve thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:56,228 | INFO     | all job control threads have been joined
[2025-10-23 20:59:50] 2025-10-23 18:58:56,235 | INFO     | [payload] validate_post thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:56,304 | INFO     | [payload] execute_payloads thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:56,430 | INFO     | [job] job monitor thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:56,937 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,014 | INFO     | [data] control thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,108 | INFO     | [payload] failed_post thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,179 | INFO     | [payload] control thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,192 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-23 20:59:50] 2025-10-23 18:58:57,234 | INFO     | [job] control thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,421 | INFO     | [job] create_data_payload thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,538 | INFO     | [data] copytool_in thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,555 | INFO     | [payload] validate_pre thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,568 | INFO     | [data] copytool_out thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:57,615 | INFO     | [job] validate thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:58:58,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-23 20:59:50] 2025-10-23 18:58:58,198 | INFO     | [job] queue monitor thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:59:02,076 | INFO     | [data] queue_monitor thread has finished
[2025-10-23 20:59:50] 2025-10-23 18:59:05,873 [wrapper] supervise_pilot (15 min periods counter: 20)
[2025-10-23 20:59:50] 2025-10-23 18:59:25,594 | INFO     | PID=7522 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-23 20:59:50] 2025-10-23 18:59:25,595 | INFO     | .. there are 9 such processes running
[2025-10-23 20:59:50] 2025-10-23 18:59:25,595 | INFO     | found 0 job(s) in 20 queues
[2025-10-23 20:59:50] 2025-10-23 18:59:25,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-23 20:59:50] 2025-10-23 18:59:25,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-23 20:59:50] 2025-10-23 18:59:40,675 | INFO     | [monitor] cgroup control has ended
[2025-10-23 20:59:50] 2025-10-23 18:59:41,920 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723196467008)>', '<ExcThread(monitor, started 139722466785024)>']
[2025-10-23 20:59:50] 2025-10-23 18:59:42,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-23 20:59:50] 2025-10-23 18:59:42,697 | INFO     | [monitor] control thread has ended
[2025-10-23 20:59:50] 2025-10-23 18:59:46,946 | INFO     | all workflow threads have been joined
[2025-10-23 20:59:50] 2025-10-23 18:59:46,946 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-23 20:59:50] 2025-10-23 18:59:46,946 | INFO     | traces error code: 0
[2025-10-23 20:59:50] 2025-10-23 18:59:46,947 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-23 20:59:50] 2025-10-23 18:59:47,294 [wrapper] ==== pilot stdout END ====
[2025-10-23 20:59:50] 2025-10-23 18:59:47,340 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-23 20:59:50] 2025-10-23 18:59:47,373 [wrapper] pilotpid: 7522
[2025-10-23 20:59:50] 2025-10-23 18:59:47,401 [wrapper] Pilot exit status: 0
[2025-10-23 20:59:50] 2025-10-23 18:59:47,465 [wrapper] pandaids: 6854097699
[2025-10-23 20:59:50] 2025-10-23 18:59:47,511 [wrapper] cleanup supervisor_pilot  8058 7523
[2025-10-23 20:59:50] 2025-10-23 18:59:47,524 [wrapper] Test setup, not cleaning
[2025-10-23 20:59:50] 2025-10-23 18:59:47,527 [wrapper] apfmon messages muted
[2025-10-23 20:59:50] 2025-10-23 18:59:47,609 [wrapper] ==== wrapper stdout END ====
[2025-10-23 20:59:50] 2025-10-23 18:59:47,683 [wrapper] ==== wrapper stderr END ====
[2025-10-23 20:59:50]  *** Error codes and diagnostics ***
[2025-10-23 20:59:50]     "exeErrorCode": 0,
[2025-10-23 20:59:50]     "exeErrorDiag": "",
[2025-10-23 20:59:50]     "pilotErrorCode": 0,
[2025-10-23 20:59:50]     "pilotErrorDiag": "",
[2025-10-23 20:59:50]  *** Listing of results directory ***
[2025-10-23 20:59:50] total 435004
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc    557409 Oct 23 02:46 pilot3.tar.gz
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc      5112 Oct 23 02:47 queuedata.json
[2025-10-23 20:59:50] -rwx------. 1 boinc boinc     36292 Oct 23 02:48 runpilot2-wrapper.sh
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc       100 Oct 23 16:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-23 20:59:50] -rwxr-xr-x. 1 boinc boinc      7986 Oct 23 16:10 run_atlas
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc       105 Oct 23 16:10 job.xml
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc      6390 Oct 23 16:10 init_data.xml
[2025-10-23 20:59:50] -rw-r--r--. 2 boinc boinc 227283774 Oct 23 16:10 EVNT.46771634._002360.pool.root.1
[2025-10-23 20:59:50] -rw-r--r--. 2 boinc boinc     15120 Oct 23 16:10 start_atlas.sh
[2025-10-23 20:59:50] drwxrwx--x. 2 boinc boinc        68 Oct 23 16:10 shared
[2025-10-23 20:59:50] -rw-r--r--. 2 boinc boinc    569685 Oct 23 16:10 input.tar.gz
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc         0 Oct 23 16:10 boinc_lockfile
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc      2560 Oct 23 16:10 pandaJob.out
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc    977348 Oct 23 16:14 agis_schedconf.cvmfs.json
[2025-10-23 20:59:50] drwx------. 5 boinc boinc      4096 Oct 23 16:14 pilot3
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc 208692243 Oct 23 20:55 HITS.46771637._097031.pool.root.1
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc       531 Oct 23 20:55 boinc_task_state.xml
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc      1019 Oct 23 20:56 memory_monitor_summary.json
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc   1560740 Oct 23 20:57 agis_ddmendpoints.agis.ALL.json
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc    506416 Oct 23 20:57 log.46771637._097031.job.log.tgz.1
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc        95 Oct 23 20:58 pilot_heartbeat.json
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc      7787 Oct 23 20:58 heartbeat.json
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc      8192 Oct 23 20:59 boinc_mmap_file
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc        28 Oct 23 20:59 wrapper_checkpoint.txt
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc      5069 Oct 23 20:59 pilotlog.txt
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc   2284207 Oct 23 20:59 log.46771637._097031.job.log.1
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc       357 Oct 23 20:59 output.list
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc       620 Oct 23 20:59 runtime_log
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc   2805760 Oct 23 20:59 result.tar.gz
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc       657 Oct 23 20:59 SLnLDmUgyV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfI7NDmyzKpqn.diag
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc      8703 Oct 23 20:59 runtime_log.err
[2025-10-23 20:59:50] -rw-r--r--. 1 boinc boinc     20667 Oct 23 20:59 stderr.txt
[2025-10-23 20:59:50] HITS file was successfully produced:
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc 208692243 Oct 23 20:55 shared/HITS.pool.root.1
[2025-10-23 20:59:50]  *** Contents of shared directory: ***
[2025-10-23 20:59:50] total 429080
[2025-10-23 20:59:50] -rw-r--r--. 2 boinc boinc 227283774 Oct 23 16:10 ATLAS.root_0
[2025-10-23 20:59:50] -rw-r--r--. 2 boinc boinc     15120 Oct 23 16:10 start_atlas.sh
[2025-10-23 20:59:50] -rw-r--r--. 2 boinc boinc    569685 Oct 23 16:10 input.tar.gz
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc 208692243 Oct 23 20:55 HITS.pool.root.1
[2025-10-23 20:59:50] -rw-------. 1 boinc boinc   2805760 Oct 23 20:59 result.tar.gz
20:59:51 (3702): run_atlas exited; CPU time 61414.522642
20:59:51 (3702): called boinc_finish(0)

</stderr_txt>
]]>

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