Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:29:29 (2699875): wrapper (7.7.26015): starting
15:29:29 (2699875): wrapper: running run_atlas (--nthreads 3)
[2025-10-23 15:29:29] Arguments: --nthreads 3
[2025-10-23 15:29:29] Threads: 3
[2025-10-23 15:29:29] Checking for CVMFS
[2025-10-23 15:29:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-23 15:29:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-23 15:29:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-23 15:29:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-23 15:29:30] 2.9.2.0 1576689 3850 84256 152038 0 56 32019918 36864000 0 130560 0 2918111 99.990 138717 1033 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-23 15:29:30] CVMFS is ok
[2025-10-23 15:29:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-23 15:29:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-23 15:29:30] Further information can be found at the LHC@home message board.
[2025-10-23 15:29:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-23 15:29:30] Checking for apptainer binary...
[2025-10-23 15:29:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-23 15:29:30] Running /usr/bin/apptainer --version
[2025-10-23 15:29:30] apptainer version 1.4.1-1.1
[2025-10-23 15:29:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-23 15:29:30] magicA246a
[2025-10-23 15:29:30] apptainer works
[2025-10-23 15:29:30] Set ATHENA_PROC_NUMBER=3
[2025-10-23 15:29:30] Set ATHENA_CORE_NUMBER=3
[2025-10-23 15:29:30] Starting ATLAS job with PandaID=6853657196
[2025-10-23 15:29:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-23 16:57:49]  *** The last 200 lines of the pilot log: ***
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | job 6853657196 has completed (purged errors)
[2025-10-23 16:57:49] 2025-10-23 14:57:18,058 | INFO     | overall cleanup function is called
[2025-10-23 16:57:49] 2025-10-23 14:57:19,065 | INFO     | --- collectZombieJob: --- 10, [2710040]
[2025-10-23 16:57:49] 2025-10-23 14:57:19,065 | INFO     | zombie collector waiting for pid 2710040
[2025-10-23 16:57:49] 2025-10-23 14:57:19,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-23 16:57:49] 2025-10-23 14:57:19,065 | INFO     | collected zombie processes
[2025-10-23 16:57:49] 2025-10-23 14:57:19,065 | INFO     | will attempt to kill all subprocesses of pid=2710040
[2025-10-23 16:57:49] 2025-10-23 14:57:19,109 | INFO     | process IDs to be killed: [2710040] (in reverse order)
[2025-10-23 16:57:49] 2025-10-23 14:57:19,134 | WARNING  | found no corresponding commands to process id(s)
[2025-10-23 16:57:49] 2025-10-23 14:57:19,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-23 16:57:49] 2025-10-23 14:57:19,136 | INFO     | did not find any defunct processes belonging to 2710040
[2025-10-23 16:57:49] 2025-10-23 14:57:19,137 | INFO     | did not find any defunct processes belonging to 2710040
[2025-10-23 16:57:49] 2025-10-23 14:57:19,137 | INFO     | ready for new job
[2025-10-23 16:57:49] 2025-10-23 14:57:19,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-23 16:57:49] 2025-10-23 14:57:19,138 | INFO     | ***************************************
[2025-10-23 16:57:49] 2025-10-23 14:57:19,138 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-23 16:57:49] 2025-10-23 14:57:19,138 | INFO     | ***************************************
[2025-10-23 16:57:49] 2025-10-23 14:57:19,138 | INFO     | 
[2025-10-23 16:57:49] 2025-10-23 14:57:19,138 | INFO     | architecture information:
[2025-10-23 16:57:49] 2025-10-23 14:57:19,138 | INFO     | executing command: cat /etc/os-release
[2025-10-23 16:57:49] 2025-10-23 14:57:19,147 | INFO     | cat /etc/os-release:
[2025-10-23 16:57:49] NAME="CentOS Linux"
[2025-10-23 16:57:49] VERSION="7 (Core)"
[2025-10-23 16:57:49] ID="centos"
[2025-10-23 16:57:49] ID_LIKE="rhel fedora"
[2025-10-23 16:57:49] VERSION_ID="7"
[2025-10-23 16:57:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-23 16:57:49] ANSI_COLOR="0;31"
[2025-10-23 16:57:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-23 16:57:49] HOME_URL="https://www.centos.org/"
[2025-10-23 16:57:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-23 16:57:49] 
[2025-10-23 16:57:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-23 16:57:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-23 16:57:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-23 16:57:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-23 16:57:49] 
[2025-10-23 16:57:49] 2025-10-23 14:57:19,147 | INFO     | ***************************************
[2025-10-23 16:57:49] 2025-10-23 14:57:19,650 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-23 16:57:49] 2025-10-23 14:57:19,663 | INFO     | sufficient remaining disk space (272165240832 B)
[2025-10-23 16:57:49] 2025-10-23 14:57:19,663 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-23 16:57:49] 2025-10-23 14:57:19,663 | INFO     | current server update state: UPDATING_FINAL
[2025-10-23 16:57:49] 2025-10-23 14:57:19,663 | INFO     | update_server=False
[2025-10-23 16:57:49] 2025-10-23 14:57:19,663 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-23 16:57:49] 2025-10-23 14:57:19,663 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-23 16:57:49] 2025-10-23 14:57:19,663 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-23 16:57:49] 2025-10-23 14:57:19,663 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-23 16:57:49] 2025-10-23 14:57:19,664 | INFO     | aborting loop
[2025-10-23 16:57:49] 2025-10-23 14:57:19,991 | INFO     | all data control threads have been joined
[2025-10-23 16:57:49] 2025-10-23 14:57:20,669 | INFO     | [job] retrieve thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:20,669 | INFO     | [job] queue monitor thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:20,669 | INFO     | [job] job monitor thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:20,802 | INFO     | all job control threads have been joined
[2025-10-23 16:57:49] 2025-10-23 14:57:20,817 | INFO     | all payload control threads have been joined
[2025-10-23 16:57:49] 2025-10-23 14:57:20,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-23 16:57:49] 2025-10-23 14:57:20,997 | INFO     | [data] control thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:21,034 | INFO     | [payload] failed_post thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:21,564 | INFO     | [data] copytool_in thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:21,590 | INFO     | [payload] validate_post thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:21,804 | INFO     | [job] control thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:21,823 | INFO     | [payload] control thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:21,855 | INFO     | [payload] execute_payloads thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:22,091 | INFO     | [job] validate thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:22,156 | INFO     | [job] create_data_payload thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:22,159 | INFO     | [payload] validate_pre thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:22,924 | INFO     | [data] copytool_out thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:23,671 | INFO     | [data] queue_monitor thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:29,703 | INFO     | job.realtimelogging is not enabled
[2025-10-23 16:57:49] 2025-10-23 14:57:30,709 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-23 16:57:49] 2025-10-23 14:57:41,714 | INFO     | [monitor] cgroup control has ended
[2025-10-23 16:57:49] 2025-10-23 14:57:43,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260804892480)>', '<ExcThread(monitor, started 140260319151872)>']
[2025-10-23 16:57:49] 2025-10-23 14:57:48,162 | INFO     | all workflow threads have been joined
[2025-10-23 16:57:49] 2025-10-23 14:57:48,163 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-23 16:57:49] 2025-10-23 14:57:48,163 | INFO     | traces error code: 0
[2025-10-23 16:57:49] 2025-10-23 14:57:48,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-23 16:57:49] 2025-10-23 14:57:49,291 | INFO     | PID=2703600 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-23 16:57:49] 2025-10-23 14:57:49,291 | INFO     | found 0 job(s) in 20 queues
[2025-10-23 16:57:49] 2025-10-23 14:57:49,291 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-23 16:57:49] 2025-10-23 14:57:49,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-23 16:57:49] 2025-10-23 14:57:49,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-23 16:57:49] 2025-10-23 14:57:49,291 | INFO     | [monitor] control thread has ended
[2025-10-23 16:57:49] 2025-10-23 14:57:49,340 [wrapper] ==== pilot stdout END ====
[2025-10-23 16:57:49] 2025-10-23 14:57:49,342 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-23 16:57:49] 2025-10-23 14:57:49,344 [wrapper] pilotpid: 2703600
[2025-10-23 16:57:49] 2025-10-23 14:57:49,346 [wrapper] Pilot exit status: 0
[2025-10-23 16:57:49] 2025-10-23 14:57:49,354 [wrapper] pandaids: 6853657196
[2025-10-23 16:57:49] 2025-10-23 14:57:49,369 [wrapper] cleanup supervisor_pilot 2722522 2703601
[2025-10-23 16:57:49] 2025-10-23 14:57:49,372 [wrapper] Test setup, not cleaning
[2025-10-23 16:57:49] 2025-10-23 14:57:49,374 [wrapper] apfmon messages muted
[2025-10-23 16:57:49] 2025-10-23 14:57:49,377 [wrapper] ==== wrapper stdout END ====
[2025-10-23 16:57:49] 2025-10-23 14:57:49,379 [wrapper] ==== wrapper stderr END ====
[2025-10-23 16:57:49]  *** Error codes and diagnostics ***
[2025-10-23 16:57:49]     "exeErrorCode": 0,
[2025-10-23 16:57:49]     "exeErrorDiag": "",
[2025-10-23 16:57:49]     "pilotErrorCode": 0,
[2025-10-23 16:57:49]     "pilotErrorDiag": "",
[2025-10-23 16:57:49]  *** Listing of results directory ***
[2025-10-23 16:57:49] total 436344
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc    557409 Oct 22 15:50 pilot3.tar.gz
[2025-10-23 16:57:49] -rwx------ 1 boinc boinc     36292 Oct 22 16:40 runpilot2-wrapper.sh
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc      5112 Oct 22 16:40 queuedata.json
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc       100 Oct 23 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-23 16:57:49] -rwxr-xr-x 1 boinc boinc      7986 Oct 23 15:29 run_atlas
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc       105 Oct 23 15:29 job.xml
[2025-10-23 16:57:49] -rw-r--r-- 2 boinc boinc 230029451 Oct 23 15:29 EVNT.46771634._003626.pool.root.1
[2025-10-23 16:57:49] drwxrwx--x 2 boinc boinc      4096 Oct 23 15:29 shared
[2025-10-23 16:57:49] -rw-r--r-- 2 boinc boinc    569675 Oct 23 15:29 input.tar.gz
[2025-10-23 16:57:49] -rw-r--r-- 2 boinc boinc     15120 Oct 23 15:29 start_atlas.sh
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc         0 Oct 23 15:29 boinc_setup_complete
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc      6447 Oct 23 15:29 init_data.xml
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc         0 Oct 23 15:29 boinc_lockfile
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc      2559 Oct 23 15:29 pandaJob.out
[2025-10-23 16:57:49] -rw------- 1 boinc boinc    977348 Oct 23 15:29 agis_schedconf.cvmfs.json
[2025-10-23 16:57:49] -rw------- 1 boinc boinc   1560740 Oct 23 15:29 agis_ddmendpoints.agis.ALL.json
[2025-10-23 16:57:49] drwx------ 5 boinc boinc      4096 Oct 23 15:29 pilot3
[2025-10-23 16:57:49] -rw------- 1 boinc boinc 210858485 Oct 23 16:56 HITS.46771637._088798.pool.root.1
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc       529 Oct 23 16:56 boinc_task_state.xml
[2025-10-23 16:57:49] -rw------- 1 boinc boinc        95 Oct 23 16:57 pilot_heartbeat.json
[2025-10-23 16:57:49] -rw------- 1 boinc boinc      1018 Oct 23 16:57 memory_monitor_summary.json
[2025-10-23 16:57:49] -rw------- 1 boinc boinc    246894 Oct 23 16:57 log.46771637._088798.job.log.tgz.1
[2025-10-23 16:57:49] -rw------- 1 boinc boinc      7760 Oct 23 16:57 heartbeat.json
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc      8192 Oct 23 16:57 boinc_mmap_file
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc        27 Oct 23 16:57 wrapper_checkpoint.txt
[2025-10-23 16:57:49] -rw------- 1 boinc boinc       747 Oct 23 16:57 pilotlog.txt
[2025-10-23 16:57:49] -rw------- 1 boinc boinc    768741 Oct 23 16:57 log.46771637._088798.job.log.1
[2025-10-23 16:57:49] -rw------- 1 boinc boinc       357 Oct 23 16:57 output.list
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc       620 Oct 23 16:57 runtime_log
[2025-10-23 16:57:49] -rw------- 1 boinc boinc   1034240 Oct 23 16:57 result.tar.gz
[2025-10-23 16:57:49] -rw------- 1 boinc boinc       662 Oct 23 16:57 xPNMDmTCpV8n9Rq4apOajLDm4fhM0noT9bVof3QYDm1lhMDmh7loSo.diag
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc      8797 Oct 23 16:57 runtime_log.err
[2025-10-23 16:57:49] -rw-r--r-- 1 boinc boinc     12345 Oct 23 16:57 stderr.txt
[2025-10-23 16:57:49] HITS file was successfully produced:
[2025-10-23 16:57:49] -rw------- 1 boinc boinc 210858485 Oct 23 16:56 shared/HITS.pool.root.1
[2025-10-23 16:57:49]  *** Contents of shared directory: ***
[2025-10-23 16:57:49] total 432156
[2025-10-23 16:57:49] -rw-r--r-- 2 boinc boinc 230029451 Oct 23 15:29 ATLAS.root_0
[2025-10-23 16:57:49] -rw-r--r-- 2 boinc boinc    569675 Oct 23 15:29 input.tar.gz
[2025-10-23 16:57:49] -rw-r--r-- 2 boinc boinc     15120 Oct 23 15:29 start_atlas.sh
[2025-10-23 16:57:49] -rw------- 1 boinc boinc 210858485 Oct 23 16:56 HITS.pool.root.1
[2025-10-23 16:57:49] -rw------- 1 boinc boinc   1034240 Oct 23 16:57 result.tar.gz
16:57:50 (2699875): run_atlas exited; CPU time 15149.939530
16:57:50 (2699875): called boinc_finish(0)

</stderr_txt>
]]>

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