Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 18:54:05 (14748): vboxwrapper version 26210
2025-10-22 18:54:05 (14748): BOINC client version: 8.2.4
2025-10-22 18:54:05 (14748): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-10-22 18:54:06 (14748): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 18:54:06 (14748): Create VM. (boinc_20c9157deeccbfe3, slot#2)
2025-10-22 18:54:06 (14748): Setting Memory Size for VM. (4400MB)
2025-10-22 18:54:07 (14748): Setting CPU Count for VM. (4)
2025-10-22 18:54:07 (14748): Setting Chipset Options for VM.
2025-10-22 18:54:07 (14748): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 18:54:07 (14748): Setting Boot Options for VM.
2025-10-22 18:54:08 (14748): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 18:54:08 (14748): Enabling VM Network Access.
2025-10-22 18:54:08 (14748): Disabling USB Support for VM.
2025-10-22 18:54:09 (14748): Disabling COM Port Support for VM.
2025-10-22 18:54:09 (14748): Disabling LPT Port Support for VM.
2025-10-22 18:54:09 (14748): Disabling Audio Support for VM.
2025-10-22 18:54:09 (14748): Disabling Clipboard Support for VM.
2025-10-22 18:54:10 (14748): Disabling Drag and Drop Support for VM.
2025-10-22 18:54:10 (14748): Adding storage controller(s) to VM.
2025-10-22 18:54:10 (14748): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 18:54:11 (14748): Adding VirtualBox Guest Additions to VM.
2025-10-22 18:54:11 (14748): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 18:54:11 (14748): forwarding host port 58977 to guest port 80
2025-10-22 18:54:11 (14748): Enabling remote desktop for VM.
2025-10-22 18:54:12 (14748): Required extension pack not installed, remote desktop not enabled.
2025-10-22 18:54:12 (14748): Enabling shared directory for VM.
2025-10-22 18:54:12 (14748): Starting VM using VBoxManage interface. (boinc_20c9157deeccbfe3, slot#2)
2025-10-22 18:54:17 (14748): Successfully started VM. (PID = '12100')
2025-10-22 18:54:17 (14748): Reporting VM Process ID to BOINC.
2025-10-22 18:54:17 (14748): Guest Log: BIOS: VirtualBox 7.2.0
2025-10-22 18:54:17 (14748): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 18:54:17 (14748): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-22 18:54:17 (14748): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 18:54:17 (14748): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 18:54:17 (14748): Detected: Web Application Enabled (http://localhost:58977)
2025-10-22 18:54:17 (14748): Preference change detected
2025-10-22 18:54:17 (14748): Setting CPU throttle for VM. (80%)
2025-10-22 18:54:17 (14748): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 18:54:19 (14748): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 18:54:19 (14748): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 18:54:22 (14748): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 18:54:22 (14748): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 18:54:22 (14748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 18:54:29 (14748): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 18:54:29 (14748): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-22 18:54:39 (14748): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 18:54:39 (14748): Guest Log: 00:00:00.000151 main     Log opened 2025-10-22T18:54:37.180340000Z
2025-10-22 18:54:39 (14748): Guest Log: 00:00:00.000278 main     OS Product: Linux
2025-10-22 18:54:39 (14748): Guest Log: 00:00:00.000323 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 18:54:39 (14748): Guest Log: 00:00:00.000356 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 18:54:39 (14748): Guest Log: 00:00:00.000388 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 18:54:39 (14748): Guest Log: 00:00:00.000389 main     Process ID: 1309
2025-10-22 18:54:39 (14748): Guest Log: 00:00:00.000390 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 18:54:39 (14748): Guest Log: 00:00:00.002785 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 18:54:39 (14748): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 18:54:39 (14748): Guest Log: [INFO] Mounting shared directory
2025-10-22 18:54:39 (14748): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 18:54:43 (14748): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 18:54:43 (14748): Guest Log: [INFO] Detected branch: prod
2025-10-22 18:54:43 (14748): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 18:54:43 (14748): Guest Log: Copying input files
2025-10-22 18:54:45 (14748): Guest Log: Copied input files into RunAtlas.
2025-10-22 18:54:45 (14748): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 18:54:45 (14748): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 18:54:45 (14748): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 18:54:45 (14748): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 18:54:49 (14748): Guest Log: 00:00:10.024767 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 550 658 000ns (GuestNow=1 761 173 688 745 777 000 ns GuestLast=1 761 159 277 195 119 000 ns fSetTimeLastLoop=true )
2025-10-22 18:54:55 (14748): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 18:54:55 (14748): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 18:54:55 (14748): Guest Log: 2.6.3.0 1589 0 32180 152013 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 18:54:56 (14748): Guest Log: copied the webapp to /var/www
2025-10-22 18:54:57 (14748): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-22 18:54:57 (14748): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-22 18:54:57 (14748): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 18:54:57 (14748): Guest Log:  *** Starting ATLAS job. (PandaID=6853744521 taskID=46771637) ***
2025-10-22 20:34:19 (14748): Status Report: Elapsed Time: '6000.000000'
2025-10-22 20:34:19 (14748): Status Report: CPU Time: '10834.437500'
2025-10-22 22:14:21 (14748): Status Report: Elapsed Time: '12000.000000'
2025-10-22 22:14:21 (14748): Status Report: CPU Time: '22986.843750'
2025-10-22 23:54:23 (14748): Status Report: Elapsed Time: '18000.000000'
2025-10-22 23:54:23 (14748): Status Report: CPU Time: '35977.359375'
2025-10-23 01:10:58 (14748): Guest Log:  *** Job finished ***
2025-10-23 01:10:58 (14748): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:33,729 | INFO     | end of generic workflow (traces error code: 0)
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:33,729 | INFO     | traces error code: 0
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:33,729 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,239 | INFO     | PID=5987 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,240 | INFO     | found 0 job(s) in 20 queues
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,242 | CRITICAL | thread 'MainThread' is not alive
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,242 | INFO     | [monitor] control thread has ended
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,378 [wrapper] ==== pilot stdout END ====
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,411 [wrapper] ==== wrapper stdout RESUME ====
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,440 [wrapper] pilotpid: 5987
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,471 [wrapper] Pilot exit status: 0
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,570 [wrapper] pandaids: 6853744521
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,729 [wrapper] cleanup supervisor_pilot 26103 5988
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,756 [wrapper] Test setup, not cleaning
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,791 [wrapper] apfmon messages muted
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,835 [wrapper] ==== wrapper stdout END ====
2025-10-23 01:10:58 (14748): Guest Log: 2025-10-23 05:10:53,887 [wrapper] ==== wrapper stderr END ====
2025-10-23 01:10:58 (14748): Guest Log:  *** Error codes and diagnostics ***
2025-10-23 01:10:58 (14748): Guest Log:     "exeErrorCode": 0,
2025-10-23 01:10:58 (14748): Guest Log:     "exeErrorDiag": "",
2025-10-23 01:10:58 (14748): Guest Log:     "pilotErrorCode": 0,
2025-10-23 01:10:58 (14748): Guest Log:     "pilotErrorDiag": "",
2025-10-23 01:10:58 (14748): Guest Log:  *** Listing of results directory ***
2025-10-23 01:10:58 (14748): Guest Log: total 211772
2025-10-23 01:10:58 (14748): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 22 17:46 pilot3.tar.gz
2025-10-23 01:10:58 (14748): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 22 18:25 queuedata.json
2025-10-23 01:10:58 (14748): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 22 18:26 runpilot2-wrapper.sh
2025-10-23 01:10:58 (14748): Guest Log: -rwxr-xr-x. 1 atlas atlas      9005 Oct 22 22:54 init_data.xml
2025-10-23 01:10:58 (14748): Guest Log: -rwxr-xr-x. 1 atlas atlas    569678 Oct 22 22:54 input.tar.gz
2025-10-23 01:10:58 (14748): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 22 22:54 start_atlas.sh
2025-10-23 01:10:58 (14748): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 22 22:54 EVNT.46771634._003726.pool.root.1 -> /data/./ATLAS.root_0
2025-10-23 01:10:58 (14748): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 22 22:54 pandaJob.out
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas    978084 Oct 22 22:55 agis_schedconf.cvmfs.json
2025-10-23 01:10:58 (14748): Guest Log: drwx------. 5 atlas atlas      4096 Oct 22 22:56 pilot3
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas 206235395 Oct 23 05:08 HITS.46771637._091330.pool.root.1
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas      1026 Oct 23 05:09 memory_monitor_summary.json
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 23 05:09 agis_ddmendpoints.agis.ALL.json
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas    495890 Oct 23 05:09 log.46771637._091330.job.log.tgz.1
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas      7810 Oct 23 05:10 heartbeat.json
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas        95 Oct 23 05:10 pilot_heartbeat.json
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas       814 Oct 23 05:10 pilotlog.txt
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas   2898818 Oct 23 05:10 log.46771637._091330.job.log.1
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas       357 Oct 23 05:10 output.list
2025-10-23 01:10:58 (14748): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 23 05:10 runtime_log
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas   3409920 Oct 23 05:10 result.tar.gz
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas       647 Oct 23 05:10 W2iNDmOisV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxT6NDmnzyLXo.diag
2025-10-23 01:10:58 (14748): Guest Log: -rw-r--r--. 1 atlas atlas      8604 Oct 23 05:10 runtime_log.err
2025-10-23 01:10:58 (14748): Guest Log: Looking for outputfile HITS.46771637._091330.pool.root.1
2025-10-23 01:10:58 (14748): Guest Log: HITS file was successfully produced
2025-10-23 01:10:58 (14748): Guest Log: -rw-------. 1 atlas atlas 206235395 Oct 23 05:08 /home/atlas/RunAtlas/HITS.46771637._091330.pool.root.1
2025-10-23 01:11:01 (14748): Guest Log: Successfully finished the ATLAS job!
2025-10-23 01:11:01 (14748): Guest Log: Copying the results back to the shared directory!
2025-10-23 01:11:02 (14748): Guest Log:  *** Contents of shared directory: ***
2025-10-23 01:11:02 (14748): Guest Log: total 426640
2025-10-23 01:11:02 (14748): Guest Log: -rwxrwxrwx. 1 root root 226624224 Oct 22 22:54 ATLAS.root_0
2025-10-23 01:11:02 (14748): Guest Log: -rwxrwxrwx. 1 root root 206235395 Oct 23 05:11 HITS.pool.root.1
2025-10-23 01:11:02 (14748): Guest Log: -rwxrwxrwx. 1 root root      9005 Oct 22 22:54 init_data.xml
2025-10-23 01:11:02 (14748): Guest Log: -rwxrwxrwx. 1 root root    569678 Oct 22 22:53 input.tar.gz
2025-10-23 01:11:02 (14748): Guest Log: -rwxrwxrwx. 1 root root   3409920 Oct 23 05:11 result.tar.gz
2025-10-23 01:11:02 (14748): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 22 22:53 start_atlas.sh
2025-10-23 01:11:02 (14748): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-23 01:11:02 (14748): VM Completion File Detected.
2025-10-23 01:11:02 (14748): Powering off VM.
2025-10-23 01:11:02 (14748): Successfully stopped VM.
2025-10-23 01:11:02 (14748): Deregistering VM. (boinc_20c9157deeccbfe3, slot#2)
2025-10-23 01:11:02 (14748): Removing network bandwidth throttle group from VM.
2025-10-23 01:11:03 (14748): Removing VM from VirtualBox.
2025-10-23 01:11:08 (14748): called boinc_finish(0)

</stderr_txt>
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