Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:40:33 (324363): wrapper (7.7.26015): starting
18:40:33 (324363): wrapper: running run_atlas (--nthreads 8)
[2025-10-22 18:40:33] Arguments: --nthreads 8
[2025-10-22 18:40:33] Threads: 8
[2025-10-22 18:40:33] Checking for CVMFS
[2025-10-22 18:40:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 18:40:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 18:40:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 18:40:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 18:40:35] 2.13.2.0 112940 153124 263736 152013 0 716 40927519 40960001 34512 16776704 0 623735297 99.833 271413716 30343 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-22 18:40:35] CVMFS is ok
[2025-10-22 18:40:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 18:40:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 18:40:35] Further information can be found at the LHC@home message board.
[2025-10-22 18:40:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 18:40:35] Checking for apptainer binary...
[2025-10-22 18:40:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 18:40:35] Running /usr/bin/apptainer --version
[2025-10-22 18:40:35] apptainer version 1.4.3-1.el9
[2025-10-22 18:40:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 18:40:36] c8-7-3.aglt2.org
[2025-10-22 18:40:36] apptainer works
[2025-10-22 18:40:36] Set ATHENA_PROC_NUMBER=8
[2025-10-22 18:40:36] Set ATHENA_CORE_NUMBER=8
[2025-10-22 18:40:36] Starting ATLAS job with PandaID=6853468470
[2025-10-22 18:40:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 20:46:42]  *** The last 200 lines of the pilot log: ***
[2025-10-22 20:46:42] 2025-10-23 00:46:03,363 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-22 20:46:42] 2025-10-23 00:46:03,383 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3779.2847656250065
[2025-10-22 20:46:42] 2025-10-23 00:46:03,471 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6853468470/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 20:46:42] 2025-10-23 00:46:03,471 | INFO     | extracted standard info from prmon json
[2025-10-22 20:46:42] 2025-10-23 00:46:03,471 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 20:46:42] 2025-10-23 00:46:03,471 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 20:46:42] 2025-10-23 00:46:03,472 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 20:46:42] 2025-10-23 00:46:03,472 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 20:46:42] 2025-10-23 00:46:03,473 | INFO     | fitting pss+swap vs Time
[2025-10-22 20:46:42] 2025-10-23 00:46:03,473 | INFO     | sum of square deviations: 535777438.36666626
[2025-10-22 20:46:42] 2025-10-23 00:46:03,473 | INFO     | sum of deviations: 32347201724.016674
[2025-10-22 20:46:42] 2025-10-23 00:46:03,473 | INFO     | mean x: 1761176639.7833333
[2025-10-22 20:46:42] 2025-10-23 00:46:03,473 | INFO     | mean y: 2325794.308333333
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | -- intersect: -106327526788.4534
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | intersect: -106327526788.4534
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | chi2: 5.140668739494369
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | sum of square deviations: 471556149.5304342
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | sum of deviations: 38782344372.3913
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | mean x: 1761176487.2869565
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | mean y: 2340434.2608695654
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | -- intersect: -144842664977.1529
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | intersect: -144842664977.1529
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | chi2: 4.380372038156881
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | current chi2=4.380372038156881 (change=14.789840385869136 %)
[2025-10-22 20:46:42] 2025-10-23 00:46:03,474 | INFO     | right removable region: 114
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | sum of square deviations: 471542607.9478257
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | sum of deviations: -4107736914.573913
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | mean x: 1761176792.2956522
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | mean y: 2412099.252173913
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | -- intersect: 15344505901.312553
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | intersect: 15344505901.312553
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | chi2: 1.0173672881211424
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | current chi2=1.0173672881211424 (change=80.20943694922444 %)
[2025-10-22 20:46:42] 2025-10-23 00:46:03,482 | INFO     | sum of square deviations: 412656714.9909091
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | sum of deviations: -10379073359.818182
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | mean x: 1761176944.8090909
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | mean y: 2428192.8181818184
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | -- intersect: 44299259059.11515
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | intersect: 44299259059.11515
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | chi2: 0.873713343978982
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | current chi2=0.873713343978982 (change=14.120165432825955 %)
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | left removable region: 20
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | sum of square deviations: 257483570.60638332
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | sum of deviations: -1145576519.0
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | mean x: 1761177066.8404255
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | mean y: 2443711.0
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | -- intersect: 7838140135.5223465
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | intersect: 7838140135.5223465
[2025-10-22 20:46:42] 2025-10-23 00:46:03,483 | INFO     | chi2: 0.0076108547507154735
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | -- intersect: 7838140135.5223465
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | current memory leak: -4.45 B/s (using 94 data points, chi2=0.01)
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | could have reported an average CPU frequency of 3772 MHz (8 samples)
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | ..............................
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | . Timing measurements:
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | . get job = 0 s
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | . initial setup = 2 s
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | . payload setup = 46 s
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | . stage-in = 0 s
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | . payload execution = 7341 s
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | . stage-out = 3 s
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | . log creation = 0 s
[2025-10-22 20:46:42] 2025-10-23 00:46:03,484 | INFO     | ..............................
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | 
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | job summary report
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | --------------------------------------------------
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | PanDA job id: 6853468470
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | task id: 46771637
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | errors: (none)
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | pilot state: finished 
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | transexitcode: 0
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | exeerrorcode: 0
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | exeerrordiag: 
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | exitcode: 0
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | exitmsg: OK
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | cpuconsumptiontime: 25216 s
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | nevents: 400
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | neventsw: 0
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | pid: 356020
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | pgrp: 356020
[2025-10-22 20:46:42] 2025-10-23 00:46:04,209 | INFO     | corecount: 8
[2025-10-22 20:46:42] 2025-10-23 00:46:04,210 | INFO     | event service: False
[2025-10-22 20:46:42] 2025-10-23 00:46:04,210 | INFO     | sizes: {0: 2348760, 1: 2348959, 11: 2348959, 14: 2349249, 22: 2349277, 7391: 2376662, 7392: 2376789, 7395: 2385843, 7396: 2385899, 7432: 2386093}
[2025-10-22 20:46:42] 2025-10-23 00:46:04,210 | INFO     | --------------------------------------------------
[2025-10-22 20:46:42] 2025-10-23 00:46:04,210 | INFO     | 
[2025-10-22 20:46:42] 2025-10-23 00:46:04,210 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-22 20:46:42] 2025-10-23 00:46:04,434 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,435 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,435 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,435 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,435 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | job 6853468470 has completed (purged errors)
[2025-10-22 20:46:42] 2025-10-23 00:46:04,436 | INFO     | overall cleanup function is called
[2025-10-22 20:46:42] 2025-10-23 00:46:05,238 | INFO     | PID=339301 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-22 20:46:42] 2025-10-23 00:46:05,238 | INFO     | .. there are 27 such processes running
[2025-10-22 20:46:42] 2025-10-23 00:46:05,455 | INFO     | --- collectZombieJob: --- 10, [356020]
[2025-10-22 20:46:42] 2025-10-23 00:46:05,455 | INFO     | zombie collector waiting for pid 356020
[2025-10-22 20:46:42] 2025-10-23 00:46:05,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 20:46:42] 2025-10-23 00:46:05,455 | INFO     | collected zombie processes
[2025-10-22 20:46:42] 2025-10-23 00:46:05,455 | INFO     | will attempt to kill all subprocesses of pid=356020
[2025-10-22 20:46:42] 2025-10-23 00:46:07,278 | INFO     | process IDs to be killed: [356020] (in reverse order)
[2025-10-22 20:46:42] 2025-10-23 00:46:07,579 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 20:46:42] 2025-10-23 00:46:07,579 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 20:46:42] 2025-10-23 00:46:07,658 | INFO     | did not find any defunct processes belonging to 356020
[2025-10-22 20:46:42] 2025-10-23 00:46:07,713 | INFO     | did not find any defunct processes belonging to 356020
[2025-10-22 20:46:42] 2025-10-23 00:46:07,713 | INFO     | ready for new job
[2025-10-22 20:46:42] 2025-10-23 00:46:07,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 20:46:42] 2025-10-23 00:46:07,715 | INFO     | ***************************************
[2025-10-22 20:46:42] 2025-10-23 00:46:07,715 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 20:46:42] 2025-10-23 00:46:07,715 | INFO     | ***************************************
[2025-10-22 20:46:42] 2025-10-23 00:46:07,715 | INFO     | 
[2025-10-22 20:46:42] 2025-10-23 00:46:07,760 | INFO     | architecture information:
[2025-10-22 20:46:42] 2025-10-23 00:46:07,777 | INFO     | executing command: cat /etc/os-release
[2025-10-22 20:46:42] 2025-10-23 00:46:07,831 | INFO     | cat /etc/os-release:
[2025-10-22 20:46:42] NAME="CentOS Linux"
[2025-10-22 20:46:42] VERSION="7 (Core)"
[2025-10-22 20:46:42] ID="centos"
[2025-10-22 20:46:42] ID_LIKE="rhel fedora"
[2025-10-22 20:46:42] VERSION_ID="7"
[2025-10-22 20:46:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 20:46:42] ANSI_COLOR="0;31"
[2025-10-22 20:46:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 20:46:42] HOME_URL="https://www.centos.org/"
[2025-10-22 20:46:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 20:46:42] 
[2025-10-22 20:46:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 20:46:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 20:46:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 20:46:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 20:46:42] 
[2025-10-22 20:46:42] 2025-10-23 00:46:07,831 | INFO     | ***************************************
[2025-10-22 20:46:42] 2025-10-23 00:46:08,335 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-22 20:46:42] 2025-10-23 00:46:08,400 | INFO     | sufficient remaining disk space (169919643648 B)
[2025-10-22 20:46:42] 2025-10-23 00:46:08,400 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 20:46:42] 2025-10-23 00:46:08,400 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 20:46:42] 2025-10-23 00:46:08,401 | INFO     | update_server=False
[2025-10-22 20:46:42] 2025-10-23 00:46:08,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 20:46:42] 2025-10-23 00:46:08,402 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 20:46:42] 2025-10-23 00:46:08,902 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 20:46:42] 2025-10-23 00:46:08,979 | INFO     | all data control threads have been joined
[2025-10-22 20:46:42] 2025-10-23 00:46:09,024 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 20:46:42] 2025-10-23 00:46:09,024 | INFO     | aborting loop
[2025-10-22 20:46:42] 2025-10-23 00:46:09,407 | INFO     | [job] retrieve thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:09,561 | INFO     | [data] copytool_in thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:09,592 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:09,592 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:09,592 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:09,658 | INFO     | all job control threads have been joined
[2025-10-22 20:46:42] 2025-10-23 00:46:09,815 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 20:46:42] 2025-10-23 00:46:09,845 | INFO     | all payload control threads have been joined
[2025-10-22 20:46:42] 2025-10-23 00:46:09,910 | INFO     | [job] queue monitor thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:09,998 | INFO     | [data] control thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:10,030 | INFO     | [job] job monitor thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:10,346 | INFO     | [payload] validate_post thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:10,353 | INFO     | [payload] failed_post thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:10,413 | INFO     | [data] copytool_out thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:10,593 | INFO     | [job] validate thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:10,664 | INFO     | [job] control thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:10,851 | INFO     | [payload] control thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:13,829 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:19,359 | INFO     | job.realtimelogging is not enabled
[2025-10-22 20:46:42] 2025-10-23 00:46:20,365 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 20:46:42] 2025-10-23 00:46:34,446 | INFO     | [monitor] cgroup control has ended
[2025-10-22 20:46:42] 2025-10-23 00:46:35,723 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140298600806208)>', '<ExcThread(monitor, started 140298109835008)>']
[2025-10-22 20:46:42] 2025-10-23 00:46:39,613 | INFO     | PID=339301 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-22 20:46:42] 2025-10-23 00:46:39,672 | INFO     | .. there are 26 such processes running
[2025-10-22 20:46:42] 2025-10-23 00:46:39,672 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 20:46:42] 2025-10-23 00:46:39,672 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 20:46:42] 2025-10-23 00:46:39,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 20:46:42] 2025-10-23 00:46:39,672 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 20:46:42] 2025-10-23 00:46:39,673 | INFO     | [monitor] control thread has ended
[2025-10-22 20:46:42] 2025-10-23 00:46:40,749 | INFO     | all workflow threads have been joined
[2025-10-22 20:46:42] 2025-10-23 00:46:40,749 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 20:46:42] 2025-10-23 00:46:40,749 | INFO     | traces error code: 0
[2025-10-22 20:46:42] 2025-10-23 00:46:40,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 20:46:42] 2025-10-23 00:46:41,025 [wrapper] ==== pilot stdout END ====
[2025-10-22 20:46:42] 2025-10-23 00:46:41,046 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 20:46:42] 2025-10-23 00:46:41,060 [wrapper] pilotpid: 339301
[2025-10-22 20:46:42] 2025-10-23 00:46:41,120 [wrapper] Pilot exit status: 0
[2025-10-22 20:46:42] 2025-10-23 00:46:41,176 [wrapper] pandaids: 6853468470
[2025-10-22 20:46:42] 2025-10-23 00:46:41,624 [wrapper] cleanup supervisor_pilot 1206299 339302
[2025-10-22 20:46:42] 2025-10-23 00:46:41,654 [wrapper] Test setup, not cleaning
[2025-10-22 20:46:42] 2025-10-23 00:46:41,682 [wrapper] apfmon messages muted
[2025-10-22 20:46:42] 2025-10-23 00:46:41,706 [wrapper] ==== wrapper stdout END ====
[2025-10-22 20:46:42] 2025-10-23 00:46:41,722 [wrapper] ==== wrapper stderr END ====
[2025-10-22 20:46:42]  *** Error codes and diagnostics ***
[2025-10-22 20:46:42]     "exeErrorCode": 0,
[2025-10-22 20:46:42]     "exeErrorDiag": "",
[2025-10-22 20:46:42]     "pilotErrorCode": 0,
[2025-10-22 20:46:42]     "pilotErrorDiag": "",
[2025-10-22 20:46:42]  *** Listing of results directory ***
[2025-10-22 20:46:42] total 429692
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas    557409 Oct 22 07:24 pilot3.tar.gz
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas      5112 Oct 22 07:50 queuedata.json
[2025-10-22 20:46:42] -rwx------. 1 boincer umatlas     36292 Oct 22 07:51 runpilot2-wrapper.sh
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas       100 Oct 22 18:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 20:46:42] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 22 18:40 run_atlas
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas       105 Oct 22 18:40 job.xml
[2025-10-22 20:46:42] -rw-r--r--. 2 boincer umatlas 228744078 Oct 22 18:40 EVNT.46771634._003493.pool.root.1
[2025-10-22 20:46:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 22 18:40 start_atlas.sh
[2025-10-22 20:46:42] drwxrwx--x. 2 boincer umatlas      4096 Oct 22 18:40 shared
[2025-10-22 20:46:42] -rw-r--r--. 2 boincer umatlas    569676 Oct 22 18:40 input.tar.gz
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas         0 Oct 22 18:40 boinc_lockfile
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas      2560 Oct 22 18:40 pandaJob.out
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas    978084 Oct 22 18:41 agis_schedconf.cvmfs.json
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas   1560740 Oct 22 18:41 agis_ddmendpoints.agis.ALL.json
[2025-10-22 20:46:42] drwx------. 5 boincer umatlas      4096 Oct 22 18:41 pilot3
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas      7161 Oct 22 20:36 init_data.xml
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas 204715759 Oct 22 20:44 HITS.46771637._086435.pool.root.1
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas       530 Oct 22 20:44 boinc_task_state.xml
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas      1052 Oct 22 20:45 memory_monitor_summary.json
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas    353354 Oct 22 20:45 log.46771637._086435.job.log.tgz.1
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas        95 Oct 22 20:45 pilot_heartbeat.json
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas      7809 Oct 22 20:46 heartbeat.json
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas      4896 Oct 22 20:46 pilotlog.txt
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas    964839 Oct 22 20:46 log.46771637._086435.job.log.1
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas       357 Oct 22 20:46 output.list
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas       620 Oct 22 20:46 runtime_log
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas   1341440 Oct 22 20:46 result.tar.gz
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas      8192 Oct 22 20:46 boinc_mmap_file
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas      8693 Oct 22 20:46 runtime_log.err
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas       655 Oct 22 20:46 ELSLDmeYmV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpc5NDmUwYnbn.diag
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas        27 Oct 22 20:46 wrapper_checkpoint.txt
[2025-10-22 20:46:42] -rw-r--r--. 1 boincer umatlas     21245 Oct 22 20:46 stderr.txt
[2025-10-22 20:46:42] HITS file was successfully produced:
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas 204715759 Oct 22 20:44 shared/HITS.pool.root.1
[2025-10-22 20:46:42]  *** Contents of shared directory: ***
[2025-10-22 20:46:42] total 425196
[2025-10-22 20:46:42] -rw-r--r--. 2 boincer umatlas 228744078 Oct 22 18:40 ATLAS.root_0
[2025-10-22 20:46:42] -rw-r--r--. 2 boincer umatlas     15120 Oct 22 18:40 start_atlas.sh
[2025-10-22 20:46:42] -rw-r--r--. 2 boincer umatlas    569676 Oct 22 18:40 input.tar.gz
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas 204715759 Oct 22 20:44 HITS.pool.root.1
[2025-10-22 20:46:42] -rw-------. 1 boincer umatlas   1341440 Oct 22 20:46 result.tar.gz
20:46:44 (324363): run_atlas exited; CPU time 25418.331120
20:46:44 (324363): called boinc_finish(0)

</stderr_txt>
]]>

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