Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:27:19 (4174): wrapper (7.7.26015): starting
10:27:19 (4174): wrapper: running run_atlas (--nthreads 8)
[2025-10-23 10:27:19] Arguments: --nthreads 8
[2025-10-23 10:27:19] Threads: 8
[2025-10-23 10:27:19] Checking for CVMFS
[2025-10-23 10:27:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-23 10:27:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-23 10:27:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-23 10:27:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-23 10:27:21] 2.11.2.0 9794 235995 141168 152030 1 60 19289282 25165825 4632 130560 0 119357086 99.899 63991685 3069 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-23 10:27:21] CVMFS is ok
[2025-10-23 10:27:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-23 10:27:21] Checking for apptainer binary...
[2025-10-23 10:27:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-23 10:27:21] Running /usr/bin/apptainer --version
[2025-10-23 10:27:21] apptainer version 1.3.2-1.el7
[2025-10-23 10:27:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-23 10:27:33] cg-vwn292.simple-grid.lan
[2025-10-23 10:27:33] apptainer works
[2025-10-23 10:27:33] Set ATHENA_PROC_NUMBER=8
[2025-10-23 10:27:33] Set ATHENA_CORE_NUMBER=8
[2025-10-23 10:27:33] Starting ATLAS job with PandaID=6853701119
[2025-10-23 10:27:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-23 15:08:57]  *** The last 200 lines of the pilot log: ***
[2025-10-23 15:08:57] 2025-10-23 13:08:01,276 | INFO     | sum of square deviations: 5705372090.0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,278 | INFO     | sum of deviations: -22044087524.000008
[2025-10-23 15:08:57] 2025-10-23 13:08:01,279 | INFO     | mean x: 1761216739.5
[2025-10-23 15:08:57] 2025-10-23 13:08:01,279 | INFO     | mean y: 2515178.3863636362
[2025-10-23 15:08:57] 2025-10-23 13:08:01,279 | INFO     | -- intersect: 6807402807.419499
[2025-10-23 15:08:57] 2025-10-23 13:08:01,279 | INFO     | intersect: 6807402807.419499
[2025-10-23 15:08:57] 2025-10-23 13:08:01,280 | INFO     | chi2: 2.4544434740658705
[2025-10-23 15:08:57] 2025-10-23 13:08:01,280 | INFO     | sum of square deviations: 5387301010.0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,283 | INFO     | sum of deviations: -4202704250.9999986
[2025-10-23 15:08:57] 2025-10-23 13:08:01,283 | INFO     | mean x: 1761216587.0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,283 | INFO     | mean y: 2523603.77992278
[2025-10-23 15:08:57] 2025-10-23 13:08:01,283 | INFO     | -- intersect: 1376471787.365196
[2025-10-23 15:08:57] 2025-10-23 13:08:01,283 | INFO     | intersect: 1376471787.365196
[2025-10-23 15:08:57] 2025-10-23 13:08:01,284 | INFO     | chi2: 1.6941055330291357
[2025-10-23 15:08:57] 2025-10-23 13:08:01,284 | INFO     | current chi2=1.6941055330291357 (change=30.978017993513156 %)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,285 | INFO     | sum of square deviations: 5081276667.5
[2025-10-23 15:08:57] 2025-10-23 13:08:01,287 | INFO     | sum of deviations: -4148947299.499994
[2025-10-23 15:08:57] 2025-10-23 13:08:01,287 | INFO     | mean x: 1761216434.5
[2025-10-23 15:08:57] 2025-10-23 13:08:01,287 | INFO     | mean y: 2523630.5787401577
[2025-10-23 15:08:57] 2025-10-23 13:08:01,287 | INFO     | -- intersect: 1440586276.6241364
[2025-10-23 15:08:57] 2025-10-23 13:08:01,287 | INFO     | intersect: 1440586276.6241364
[2025-10-23 15:08:57] 2025-10-23 13:08:01,288 | INFO     | chi2: 1.6938470969183366
[2025-10-23 15:08:57] 2025-10-23 13:08:01,288 | INFO     | current chi2=1.6938470969183366 (change=0.015255018401186935 %)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,288 | INFO     | right removable region: 253
[2025-10-23 15:08:57] 2025-10-23 13:08:01,289 | INFO     | sum of square deviations: 5387301010.0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,291 | INFO     | sum of deviations: -63091591729.000015
[2025-10-23 15:08:57] 2025-10-23 13:08:01,291 | INFO     | mean x: 1761216892.0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,291 | INFO     | mean y: 2534692.8494208492
[2025-10-23 15:08:57] 2025-10-23 13:08:01,291 | INFO     | -- intersect: 20628443081.859657
[2025-10-23 15:08:57] 2025-10-23 13:08:01,292 | INFO     | intersect: 20628443081.859657
[2025-10-23 15:08:57] 2025-10-23 13:08:01,292 | INFO     | chi2: 0.9848376520870992
[2025-10-23 15:08:57] 2025-10-23 13:08:01,292 | INFO     | current chi2=0.9848376520870992 (change=59.875317460227286 %)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,293 | INFO     | sum of square deviations: 5081276667.5
[2025-10-23 15:08:57] 2025-10-23 13:08:01,295 | INFO     | sum of deviations: -59358357690.999985
[2025-10-23 15:08:57] 2025-10-23 13:08:01,295 | INFO     | mean x: 1761217044.5
[2025-10-23 15:08:57] 2025-10-23 13:08:01,295 | INFO     | mean y: 2532811.448818898
[2025-10-23 15:08:57] 2025-10-23 13:08:01,295 | INFO     | -- intersect: 20576683392.06505
[2025-10-23 15:08:57] 2025-10-23 13:08:01,296 | INFO     | intersect: 20576683392.06505
[2025-10-23 15:08:57] 2025-10-23 13:08:01,296 | INFO     | chi2: 0.9754806919397145
[2025-10-23 15:08:57] 2025-10-23 13:08:01,296 | INFO     | current chi2=0.9754806919397145 (change=0.9501017886100378 %)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,296 | INFO     | left removable region: 20
[2025-10-23 15:08:57] 2025-10-23 13:08:01,297 | INFO     | sum of square deviations: 3922276332.0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,299 | INFO     | sum of deviations: -25366270377.999996
[2025-10-23 15:08:57] 2025-10-23 13:08:01,299 | INFO     | mean x: 1761217014.0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,299 | INFO     | mean y: 2533579.6351931333
[2025-10-23 15:08:57] 2025-10-23 13:08:01,299 | INFO     | -- intersect: 11392732329.012293
[2025-10-23 15:08:57] 2025-10-23 13:08:01,299 | INFO     | intersect: 11392732329.012293
[2025-10-23 15:08:57] 2025-10-23 13:08:01,300 | INFO     | chi2: 0.1606358813838275
[2025-10-23 15:08:57] 2025-10-23 13:08:01,300 | INFO     | -- intersect: 11392732329.012293
[2025-10-23 15:08:57] 2025-10-23 13:08:01,300 | INFO     | current memory leak: -6.47 B/s (using 233 data points, chi2=0.16)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,301 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,301 | INFO     | ..............................
[2025-10-23 15:08:57] 2025-10-23 13:08:01,301 | INFO     | . Timing measurements:
[2025-10-23 15:08:57] 2025-10-23 13:08:01,301 | INFO     | . get job = 0 s
[2025-10-23 15:08:57] 2025-10-23 13:08:01,302 | INFO     | . initial setup = 12 s
[2025-10-23 15:08:57] 2025-10-23 13:08:01,302 | INFO     | . payload setup = 128 s
[2025-10-23 15:08:57] 2025-10-23 13:08:01,302 | INFO     | . stage-in = 0 s
[2025-10-23 15:08:57] 2025-10-23 13:08:01,302 | INFO     | . payload execution = 16181 s
[2025-10-23 15:08:57] 2025-10-23 13:08:01,302 | INFO     | . stage-out = 2 s
[2025-10-23 15:08:57] 2025-10-23 13:08:01,302 | INFO     | . log creation = 1 s
[2025-10-23 15:08:57] 2025-10-23 13:08:01,302 | INFO     | ..............................
[2025-10-23 15:08:57] 2025-10-23 13:08:01,433 | INFO     | 
[2025-10-23 15:08:57] 2025-10-23 13:08:01,433 | INFO     | job summary report
[2025-10-23 15:08:57] 2025-10-23 13:08:01,433 | INFO     | --------------------------------------------------
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | PanDA job id: 6853701119
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | task id: 46771637
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | errors: (none)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | pilot state: finished 
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | transexitcode: 0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | exeerrorcode: 0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | exeerrordiag: 
[2025-10-23 15:08:57] 2025-10-23 13:08:01,434 | INFO     | exitcode: 0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | exitmsg: OK
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | cpuconsumptiontime: 61522 s
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | nevents: 400
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | neventsw: 0
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | pid: 14521
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | pgrp: 14521
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | corecount: 8
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | event service: False
[2025-10-23 15:08:57] 2025-10-23 13:08:01,435 | INFO     | sizes: {0: 2348103, 1: 2348789, 2: 2348988, 13: 2348988, 23: 2349044, 34: 2349072, 45: 2349228, 55: 2349256, 66: 2349284, 77: 2349312, 88: 2349368, 94: 2349938, 98
[2025-10-23 15:08:57] 2025-10-23 13:08:01,436 | INFO     | --------------------------------------------------
[2025-10-23 15:08:57] 2025-10-23 13:08:01,436 | INFO     | 
[2025-10-23 15:08:57] 2025-10-23 13:08:01,436 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-10-23 15:08:57] 2025-10-23 13:08:01,922 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,923 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,924 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,925 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-23 15:08:57] 2025-10-23 13:08:01,925 | INFO     | job 6853701119 has completed (purged errors)
[2025-10-23 15:08:57] 2025-10-23 13:08:01,925 | INFO     | overall cleanup function is called
[2025-10-23 15:08:57] 2025-10-23 13:08:02,935 | INFO     | --- collectZombieJob: --- 10, [14521]
[2025-10-23 15:08:57] 2025-10-23 13:08:02,935 | INFO     | zombie collector waiting for pid 14521
[2025-10-23 15:08:57] 2025-10-23 13:08:02,935 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-23 15:08:57] 2025-10-23 13:08:02,935 | INFO     | collected zombie processes
[2025-10-23 15:08:57] 2025-10-23 13:08:02,935 | INFO     | will attempt to kill all subprocesses of pid=14521
[2025-10-23 15:08:57] 2025-10-23 13:08:03,068 | INFO     | process IDs to be killed: [14521] (in reverse order)
[2025-10-23 15:08:57] 2025-10-23 13:08:03,850 | WARNING  | found no corresponding commands to process id(s)
[2025-10-23 15:08:57] 2025-10-23 13:08:03,851 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-23 15:08:57] 2025-10-23 13:08:03,854 | INFO     | did not find any defunct processes belonging to 14521
[2025-10-23 15:08:57] 2025-10-23 13:08:03,857 | INFO     | did not find any defunct processes belonging to 14521
[2025-10-23 15:08:57] 2025-10-23 13:08:03,858 | INFO     | ready for new job
[2025-10-23 15:08:57] 2025-10-23 13:08:03,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-23 15:08:57] 2025-10-23 13:08:03,860 | INFO     | ***************************************
[2025-10-23 15:08:57] 2025-10-23 13:08:03,861 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-23 15:08:57] 2025-10-23 13:08:03,861 | INFO     | ***************************************
[2025-10-23 15:08:57] 2025-10-23 13:08:03,861 | INFO     | 
[2025-10-23 15:08:57] 2025-10-23 13:08:03,861 | INFO     | pilot is running in a VM
[2025-10-23 15:08:57] 2025-10-23 13:08:03,861 | INFO     | architecture information:
[2025-10-23 15:08:57] 2025-10-23 13:08:03,866 | INFO     | executing command: cat /etc/os-release
[2025-10-23 15:08:57] 2025-10-23 13:08:03,960 | INFO     | cat /etc/os-release:
[2025-10-23 15:08:57] NAME="CentOS Linux"
[2025-10-23 15:08:57] VERSION="7 (Core)"
[2025-10-23 15:08:57] ID="centos"
[2025-10-23 15:08:57] ID_LIKE="rhel fedora"
[2025-10-23 15:08:57] VERSION_ID="7"
[2025-10-23 15:08:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-23 15:08:57] ANSI_COLOR="0;31"
[2025-10-23 15:08:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-23 15:08:57] HOME_URL="https://www.centos.org/"
[2025-10-23 15:08:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-23 15:08:57] 
[2025-10-23 15:08:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-23 15:08:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-23 15:08:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-23 15:08:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-23 15:08:57] 
[2025-10-23 15:08:57] 2025-10-23 13:08:03,961 | INFO     | ***************************************
[2025-10-23 15:08:57] 2025-10-23 13:08:04,464 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-10-23 15:08:57] 2025-10-23 13:08:04,658 | INFO     | sufficient remaining disk space (496105422848 B)
[2025-10-23 15:08:57] 2025-10-23 13:08:04,659 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-23 15:08:57] 2025-10-23 13:08:04,659 | INFO     | current server update state: UPDATING_FINAL
[2025-10-23 15:08:57] 2025-10-23 13:08:04,659 | INFO     | update_server=False
[2025-10-23 15:08:57] 2025-10-23 13:08:04,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-23 15:08:57] 2025-10-23 13:08:04,659 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-23 15:08:57] 2025-10-23 13:08:04,886 | INFO     | all job control threads have been joined
[2025-10-23 15:08:57] 2025-10-23 13:08:04,974 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-23 15:08:57] 2025-10-23 13:08:04,974 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-23 15:08:57] 2025-10-23 13:08:04,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-23 15:08:57] 2025-10-23 13:08:04,974 | INFO     | will abort loop
[2025-10-23 15:08:57] 2025-10-23 13:08:05,010 | INFO     | all data control threads have been joined
[2025-10-23 15:08:57] 2025-10-23 13:08:05,519 | INFO     | all payload control threads have been joined
[2025-10-23 15:08:57] 2025-10-23 13:08:05,665 | INFO     | [job] retrieve thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:05,809 | INFO     | [payload] execute_payloads thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:05,892 | INFO     | [job] control thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:05,912 | INFO     | [payload] failed_post thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:05,928 | INFO     | [job] create_data_payload thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:05,980 | INFO     | [job] job monitor thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:06,017 | INFO     | [data] control thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:06,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-23 15:08:57] 2025-10-23 13:08:06,451 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-23 15:08:57] 2025-10-23 13:08:06,525 | INFO     | [payload] control thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:06,667 | INFO     | [data] copytool_out thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:06,763 | INFO     | [payload] validate_pre thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:06,772 | INFO     | [payload] validate_post thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:07,116 | INFO     | [job] validate thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:07,160 | INFO     | [data] copytool_in thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:07,457 | INFO     | [job] queue monitor thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:10,206 | INFO     | [data] queue_monitor thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:14,947 | INFO     | job.realtimelogging is not enabled
[2025-10-23 15:08:57] 2025-10-23 13:08:15,953 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-23 15:08:57] 2025-10-23 13:08:33,631 | INFO     | PID=7936 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-23 15:08:57] 2025-10-23 13:08:33,632 | INFO     | .. there are 9 such processes running
[2025-10-23 15:08:57] 2025-10-23 13:08:33,632 | INFO     | found 0 job(s) in 20 queues
[2025-10-23 15:08:57] 2025-10-23 13:08:33,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-23 15:08:57] 2025-10-23 13:08:33,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-23 15:08:57] 2025-10-23 13:08:45,951 | INFO     | [monitor] cgroup control has ended
[2025-10-23 15:08:57] 2025-10-23 13:08:46,208 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140023196624704)>', '<ExcThread(monitor, started 140022745380608)>']
[2025-10-23 15:08:57] 2025-10-23 13:08:46,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-23 15:08:57] 2025-10-23 13:08:46,711 | INFO     | [monitor] control thread has ended
[2025-10-23 15:08:57] 2025-10-23 13:08:51,234 | INFO     | all workflow threads have been joined
[2025-10-23 15:08:57] 2025-10-23 13:08:51,234 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-23 15:08:57] 2025-10-23 13:08:51,234 | INFO     | traces error code: 0
[2025-10-23 15:08:57] 2025-10-23 13:08:51,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-23 15:08:57] 2025-10-23 13:08:51,590 [wrapper] ==== pilot stdout END ====
[2025-10-23 15:08:57] 2025-10-23 13:08:51,667 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-23 15:08:57] 2025-10-23 13:08:51,766 [wrapper] pilotpid: 7936
[2025-10-23 15:08:57] 2025-10-23 13:08:51,876 [wrapper] Pilot exit status: 0
[2025-10-23 15:08:57] 2025-10-23 13:08:52,423 [wrapper] pandaids: 6853701119
[2025-10-23 15:08:57] 2025-10-23 13:08:53,536 [wrapper] cleanup supervisor_pilot  9763 7937
[2025-10-23 15:08:57] 2025-10-23 13:08:53,669 [wrapper] Test setup, not cleaning
[2025-10-23 15:08:57] 2025-10-23 13:08:53,764 [wrapper] apfmon messages muted
[2025-10-23 15:08:57] 2025-10-23 13:08:53,871 [wrapper] ==== wrapper stdout END ====
[2025-10-23 15:08:57] 2025-10-23 13:08:53,990 [wrapper] ==== wrapper stderr END ====
[2025-10-23 15:08:57]  *** Error codes and diagnostics ***
[2025-10-23 15:08:57]     "exeErrorCode": 0,
[2025-10-23 15:08:57]     "exeErrorDiag": "",
[2025-10-23 15:08:57]     "pilotErrorCode": 0,
[2025-10-23 15:08:57]     "pilotErrorDiag": "",
[2025-10-23 15:08:57]  *** Listing of results directory ***
[2025-10-23 15:08:57] total 439772
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc    557409 Oct 22 18:51 pilot3.tar.gz
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc      5112 Oct 22 19:15 queuedata.json
[2025-10-23 15:08:57] -rwx------. 1 boinc boinc     36292 Oct 22 19:18 runpilot2-wrapper.sh
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc       100 Oct 23 10:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-23 15:08:57] -rwxr-xr-x. 1 boinc boinc      7986 Oct 23 10:27 run_atlas
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc       105 Oct 23 10:27 job.xml
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc      6391 Oct 23 10:27 init_data.xml
[2025-10-23 15:08:57] -rw-r--r--. 2 boinc boinc 229863646 Oct 23 10:27 EVNT.46771634._003688.pool.root.1
[2025-10-23 15:08:57] -rw-r--r--. 2 boinc boinc     15120 Oct 23 10:27 start_atlas.sh
[2025-10-23 15:08:57] drwxrwx--x. 2 boinc boinc        68 Oct 23 10:27 shared
[2025-10-23 15:08:57] -rw-r--r--. 2 boinc boinc    569682 Oct 23 10:27 input.tar.gz
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc         0 Oct 23 10:27 boinc_lockfile
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc      2560 Oct 23 10:27 pandaJob.out
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc    978111 Oct 23 10:31 agis_schedconf.cvmfs.json
[2025-10-23 15:08:57] drwx------. 5 boinc boinc      4096 Oct 23 10:31 pilot3
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc 211137087 Oct 23 15:05 HITS.46771637._090373.pool.root.1
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc       531 Oct 23 15:05 boinc_task_state.xml
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc      1019 Oct 23 15:06 memory_monitor_summary.json
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc   1560740 Oct 23 15:06 agis_ddmendpoints.agis.ALL.json
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc    497998 Oct 23 15:06 log.46771637._090373.job.log.tgz.1
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc        95 Oct 23 15:07 pilot_heartbeat.json
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc      7786 Oct 23 15:08 heartbeat.json
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc      8192 Oct 23 15:08 boinc_mmap_file
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc        28 Oct 23 15:08 wrapper_checkpoint.txt
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc      5142 Oct 23 15:08 pilotlog.txt
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc   2212354 Oct 23 15:08 log.46771637._090373.job.log.1
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc       357 Oct 23 15:08 output.list
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc       620 Oct 23 15:08 runtime_log
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc   2734080 Oct 23 15:08 result.tar.gz
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc      8717 Oct 23 15:08 runtime_log.err
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc       656 Oct 23 15:08 dZOLDm0erV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlK6NDmpBa69m.diag
[2025-10-23 15:08:57] -rw-r--r--. 1 boinc boinc     20666 Oct 23 15:08 stderr.txt
[2025-10-23 15:08:57] HITS file was successfully produced:
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc 211137087 Oct 23 15:05 shared/HITS.pool.root.1
[2025-10-23 15:08:57]  *** Contents of shared directory: ***
[2025-10-23 15:08:57] total 433920
[2025-10-23 15:08:57] -rw-r--r--. 2 boinc boinc 229863646 Oct 23 10:27 ATLAS.root_0
[2025-10-23 15:08:57] -rw-r--r--. 2 boinc boinc     15120 Oct 23 10:27 start_atlas.sh
[2025-10-23 15:08:57] -rw-r--r--. 2 boinc boinc    569682 Oct 23 10:27 input.tar.gz
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc 211137087 Oct 23 15:05 HITS.pool.root.1
[2025-10-23 15:08:57] -rw-------. 1 boinc boinc   2734080 Oct 23 15:08 result.tar.gz
15:08:58 (4174): run_atlas exited; CPU time 61739.764242
15:08:58 (4174): called boinc_finish(0)

</stderr_txt>
]]>

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