Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:53:44 (1380): wrapper (7.7.26015): starting
01:53:44 (1380): wrapper: running run_atlas (--nthreads 8)
[2025-10-23 01:53:44] Arguments: --nthreads 8
[2025-10-23 01:53:44] Threads: 8
[2025-10-23 01:53:44] Checking for CVMFS
[2025-10-23 01:53:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-23 01:53:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-23 01:53:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-23 01:53:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-23 01:53:44] 2.11.0.0 7246 15967 64352 152014 0 8 2290539 4096001 70 130560 0 955698 97.902 4675320 1166 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-23 01:53:44] CVMFS is ok
[2025-10-23 01:53:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-23 01:53:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-23 01:53:44] Further information can be found at the LHC@home message board.
[2025-10-23 01:53:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-23 01:53:44] Checking for apptainer binary...
[2025-10-23 01:53:44] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-23 01:53:44] apptainer is not installed, using version from CVMFS
[2025-10-23 01:53:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-23 01:53:44] WARNING: Environment variable TMPDIR already has value [/tmp/job_10709015/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node422
[2025-10-23 01:53:44] apptainer works
[2025-10-23 01:53:44] Set ATHENA_PROC_NUMBER=8
[2025-10-23 01:53:44] Set ATHENA_CORE_NUMBER=8
[2025-10-23 01:53:44] Starting ATLAS job with PandaID=6853469833
[2025-10-23 01:53:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10709015/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-23 02:50:23]  *** The last 200 lines of the pilot log: ***
[2025-10-23 02:50:23]  mtime=0
[2025-10-23 02:50:23]  protocol_id=None
[2025-10-23 02:50:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-23 02:50:23]  replicas=None
[2025-10-23 02:50:23]  scope=mc23_13p6TeV
[2025-10-23 02:50:23]  status=None
[2025-10-23 02:50:23]  status_code=0
[2025-10-23 02:50:23]  storage_token=
[2025-10-23 02:50:23]  surl=/tmp/job_10709015/atlas/pilot/slots/0/PanDA_Pilot-6853469833/log.46771637._087095.job.log.tgz.1
[2025-10-23 02:50:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/02/log.46771637._087095.job.log.tgz.1
[2025-10-23 02:50:23]  workdir=None
[2025-10-23 02:50:23] ]
[2025-10-23 02:50:23] 2025-10-23 00:49:40,447 | INFO     | transferring file log.46771637._087095.job.log.tgz.1 from /tmp/job_10709015/atlas/pilot/slots/0/PanDA_Pilot-6853469833/log.46771637._087095.job.log.tgz.1 to /tmp/j
[2025-10-23 02:50:23] 2025-10-23 00:49:40,447 | INFO     | executing command: /usr/bin/env mv /tmp/job_10709015/atlas/pilot/slots/0/PanDA_Pilot-6853469833/log.46771637._087095.job.log.tgz.1 /tmp/job_10709015/atlas/pilot/sl
[2025-10-23 02:50:23] 2025-10-23 00:49:40,455 | INFO     | adding to output.list: log.46771637._087095.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/02/log.46771637._087095.job.log.tg
[2025-10-23 02:50:23] 2025-10-23 00:49:40,456 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-23 02:50:23] 2025-10-23 00:49:40,456 | INFO     | summary of transferred files:
[2025-10-23 02:50:23] 2025-10-23 00:49:40,456 | INFO     |  -- lfn=log.46771637._087095.job.log.tgz.1, status_code=0, status=transferred
[2025-10-23 02:50:23] 2025-10-23 00:49:40,456 | INFO     | stage-out finished correctly
[2025-10-23 02:50:23] 2025-10-23 00:49:40,510 | INFO     | monitor loop #267: job 0:6853469833 is in state 'finished'
[2025-10-23 02:50:23] 2025-10-23 00:49:40,510 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-23 02:50:23] 2025-10-23 00:49:40,526 | INFO     | time since job start (3328s) is within the limit (172800.0s)
[2025-10-23 02:50:23] 2025-10-23 00:49:40,542 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-23 02:50:23] 2025-10-23 00:49:42,428 | INFO     | job 6853469833 has state=finished
[2025-10-23 02:50:23] 2025-10-23 00:49:42,429 | INFO     | preparing for final server update for job 6853469833 in state='finished'
[2025-10-23 02:50:23] 2025-10-23 00:49:42,429 | INFO     | this job has now completed (state=finished)
[2025-10-23 02:50:23] 2025-10-23 00:49:42,429 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-23 02:50:23] 2025-10-23 00:49:42,429 | INFO     | log transfer has been attempted: DONE
[2025-10-23 02:50:23] 2025-10-23 00:49:42,429 | INFO     | job 6853469833 has finished - writing final server update
[2025-10-23 02:50:23] 2025-10-23 00:49:42,429 | INFO     | total number of processed events: 400 (read)
[2025-10-23 02:50:23] 2025-10-23 00:49:42,429 | INFO     | executing command: lscpu
[2025-10-23 02:50:23] 2025-10-23 00:49:42,459 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-23 02:50:23] 2025-10-23 00:49:42,528 | INFO     | time since job start (3330s) is within the limit (172800.0s)
[2025-10-23 02:50:23] 2025-10-23 00:49:43,012 | INFO     | monitor loop #268: job 0:6853469833 is in state 'finished'
[2025-10-23 02:50:23] 2025-10-23 00:49:43,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-23 02:50:23] 2025-10-23 00:49:44,225 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-23 02:50:23] 2025-10-23 00:49:44,229 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2916.810359375
[2025-10-23 02:50:23] 2025-10-23 00:49:44,234 | INFO     | using path: /tmp/job_10709015/atlas/pilot/slots/0/PanDA_Pilot-6853469833/memory_monitor_summary.json (trf name=prmon)
[2025-10-23 02:50:23] 2025-10-23 00:49:44,235 | INFO     | extracted standard info from prmon json
[2025-10-23 02:50:23] 2025-10-23 00:49:44,235 | INFO     | extracted standard memory fields from prmon json
[2025-10-23 02:50:23] 2025-10-23 00:49:44,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-23 02:50:23] 2025-10-23 00:49:44,235 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-23 02:50:23] 2025-10-23 00:49:44,235 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | fitting pss+swap vs Time
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | sum of square deviations: 32179208.0
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | sum of deviations: 2366055373.0
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | mean x: 1761179037.0
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | mean y: 2485652.489361702
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | -- intersect: -129492532475.63908
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | intersect: -129492532475.63908
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | chi2: 0.16878386742191095
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | -- intersect: -129492532475.63908
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | current memory leak: 73.53 B/s (using 47 data points, chi2=0.17)
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | could have reported an average CPU frequency of 2701 MHz (5 samples)
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | ..............................
[2025-10-23 02:50:23] 2025-10-23 00:49:44,236 | INFO     | . Timing measurements:
[2025-10-23 02:50:23] 2025-10-23 00:49:44,237 | INFO     | . get job = 0 s
[2025-10-23 02:50:23] 2025-10-23 00:49:44,237 | INFO     | . initial setup = 5 s
[2025-10-23 02:50:23] 2025-10-23 00:49:44,237 | INFO     | . payload setup = 60 s
[2025-10-23 02:50:23] 2025-10-23 00:49:44,237 | INFO     | . stage-in = 0 s
[2025-10-23 02:50:23] 2025-10-23 00:49:44,237 | INFO     | . payload execution = 3250 s
[2025-10-23 02:50:23] 2025-10-23 00:49:44,237 | INFO     | . stage-out = 0 s
[2025-10-23 02:50:23] 2025-10-23 00:49:44,237 | INFO     | . log creation = 0 s
[2025-10-23 02:50:23] 2025-10-23 00:49:44,237 | INFO     | ..............................
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | 
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | job summary report
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | --------------------------------------------------
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | PanDA job id: 6853469833
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | task id: 46771637
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | errors: (none)
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | pilot state: finished 
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | transexitcode: 0
[2025-10-23 02:50:23] 2025-10-23 00:49:44,286 | INFO     | exeerrorcode: 0
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | exeerrordiag: 
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | exitcode: 0
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | exitmsg: OK
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | cpuconsumptiontime: 21125 s
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | nevents: 400
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | neventsw: 0
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | pid: 19592
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | pgrp: 19592
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | corecount: 8
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | event service: False
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | sizes: {0: 2349057, 3: 2349319, 11: 2349347, 3314: 2374932, 3315: 2384016, 3319: 2384186}
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | --------------------------------------------------
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | 
[2025-10-23 02:50:23] 2025-10-23 00:49:44,287 | INFO     | executing command: ls -lF /tmp/job_10709015/atlas/pilot/slots/0
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-23 02:50:23] 2025-10-23 00:49:44,296 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,297 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-23 02:50:23] 2025-10-23 00:49:44,297 | INFO     | job 6853469833 has completed (purged errors)
[2025-10-23 02:50:23] 2025-10-23 00:49:44,297 | INFO     | overall cleanup function is called
[2025-10-23 02:50:23] 2025-10-23 00:49:45,303 | INFO     | --- collectZombieJob: --- 10, [19592]
[2025-10-23 02:50:23] 2025-10-23 00:49:45,303 | INFO     | zombie collector waiting for pid 19592
[2025-10-23 02:50:23] 2025-10-23 00:49:45,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-23 02:50:23] 2025-10-23 00:49:45,303 | INFO     | collected zombie processes
[2025-10-23 02:50:23] 2025-10-23 00:49:45,303 | INFO     | will attempt to kill all subprocesses of pid=19592
[2025-10-23 02:50:23] 2025-10-23 00:49:45,410 | INFO     | process IDs to be killed: [19592] (in reverse order)
[2025-10-23 02:50:23] 2025-10-23 00:49:45,448 | WARNING  | found no corresponding commands to process id(s)
[2025-10-23 02:50:23] 2025-10-23 00:49:45,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-23 02:50:23] 2025-10-23 00:49:45,452 | INFO     | did not find any defunct processes belonging to 19592
[2025-10-23 02:50:23] 2025-10-23 00:49:45,455 | INFO     | did not find any defunct processes belonging to 19592
[2025-10-23 02:50:23] 2025-10-23 00:49:45,455 | INFO     | ready for new job
[2025-10-23 02:50:23] 2025-10-23 00:49:45,455 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-23 02:50:23] 2025-10-23 00:49:45,456 | INFO     | ***************************************
[2025-10-23 02:50:23] 2025-10-23 00:49:45,456 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-23 02:50:23] 2025-10-23 00:49:45,456 | INFO     | ***************************************
[2025-10-23 02:50:23] 2025-10-23 00:49:45,456 | INFO     | 
[2025-10-23 02:50:23] 2025-10-23 00:49:45,470 | INFO     | architecture information:
[2025-10-23 02:50:23] 2025-10-23 00:49:45,470 | INFO     | executing command: cat /etc/os-release
[2025-10-23 02:50:23] 2025-10-23 00:49:45,476 | INFO     | cat /etc/os-release:
[2025-10-23 02:50:23] NAME="CentOS Linux"
[2025-10-23 02:50:23] VERSION="7 (Core)"
[2025-10-23 02:50:23] ID="centos"
[2025-10-23 02:50:23] ID_LIKE="rhel fedora"
[2025-10-23 02:50:23] VERSION_ID="7"
[2025-10-23 02:50:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-23 02:50:23] ANSI_COLOR="0;31"
[2025-10-23 02:50:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-23 02:50:23] HOME_URL="https://www.centos.org/"
[2025-10-23 02:50:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-23 02:50:23] 
[2025-10-23 02:50:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-23 02:50:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-23 02:50:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-23 02:50:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-23 02:50:23] 
[2025-10-23 02:50:23] 2025-10-23 00:49:45,476 | INFO     | ***************************************
[2025-10-23 02:50:23] 2025-10-23 00:49:45,978 | INFO     | executing command: df -mP /tmp/job_10709015/atlas/pilot/slots/0
[2025-10-23 02:50:23] 2025-10-23 00:49:45,983 | INFO     | sufficient remaining disk space (224018825216 B)
[2025-10-23 02:50:23] 2025-10-23 00:49:45,983 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-23 02:50:23] 2025-10-23 00:49:45,983 | INFO     | current server update state: UPDATING_FINAL
[2025-10-23 02:50:23] 2025-10-23 00:49:45,983 | INFO     | update_server=False
[2025-10-23 02:50:23] 2025-10-23 00:49:45,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-23 02:50:23] 2025-10-23 00:49:45,983 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-23 02:50:23] 2025-10-23 00:49:46,014 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-23 02:50:23] 2025-10-23 00:49:46,519 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-23 02:50:23] 2025-10-23 00:49:46,519 | INFO     | aborting loop
[2025-10-23 02:50:23] 2025-10-23 00:49:46,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-23 02:50:23] 2025-10-23 00:49:46,918 | INFO     | all job control threads have been joined
[2025-10-23 02:50:23] 2025-10-23 00:49:46,945 | INFO     | all payload control threads have been joined
[2025-10-23 02:50:23] 2025-10-23 00:49:46,976 | INFO     | all data control threads have been joined
[2025-10-23 02:50:23] 2025-10-23 00:49:46,988 | INFO     | [job] retrieve thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:46,989 | INFO     | [job] queue monitor thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:47,303 | INFO     | [payload] validate_post thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:47,524 | INFO     | [job] job monitor thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:47,786 | INFO     | [payload] execute_payloads thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:47,923 | INFO     | [job] control thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:47,951 | INFO     | [payload] control thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:47,982 | INFO     | [data] control thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:48,019 | INFO     | [data] copytool_out thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:48,020 | INFO     | [data] copytool_in thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:48,152 | INFO     | [job] validate thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:48,225 | INFO     | [job] create_data_payload thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:48,407 | INFO     | [payload] failed_post thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:48,457 | INFO     | [payload] validate_pre thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:50,599 | INFO     | [data] queue_monitor thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:49:56,862 | INFO     | job.realtimelogging is not enabled
[2025-10-23 02:50:23] 2025-10-23 00:49:57,867 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-23 02:50:23] 2025-10-23 00:50:15,725 | INFO     | PID=11969 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-23 02:50:23] 2025-10-23 00:50:15,725 | INFO     | .. there are 6 such processes running
[2025-10-23 02:50:23] 2025-10-23 00:50:15,725 | INFO     | found 0 job(s) in 20 queues
[2025-10-23 02:50:23] 2025-10-23 00:50:15,725 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-23 02:50:23] 2025-10-23 00:50:15,725 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-23 02:50:23] 2025-10-23 00:50:17,137 | INFO     | [monitor] cgroup control has ended
[2025-10-23 02:50:23] 2025-10-23 00:50:18,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456052061952)>']
[2025-10-23 02:50:23] 2025-10-23 00:50:18,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-23 02:50:23] 2025-10-23 00:50:18,740 | INFO     | [monitor] control thread has ended
[2025-10-23 02:50:23] 2025-10-23 00:50:23,699 | INFO     | all workflow threads have been joined
[2025-10-23 02:50:23] 2025-10-23 00:50:23,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-23 02:50:23] 2025-10-23 00:50:23,700 | INFO     | traces error code: 0
[2025-10-23 02:50:23] 2025-10-23 00:50:23,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-23 02:50:23] 2025-10-23 00:50:23,752 [wrapper] ==== pilot stdout END ====
[2025-10-23 02:50:23] 2025-10-23 00:50:23,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-23 02:50:23] 2025-10-23 00:50:23,755 [wrapper] pilotpid: 11969
[2025-10-23 02:50:23] 2025-10-23 00:50:23,756 [wrapper] Pilot exit status: 0
[2025-10-23 02:50:23] 2025-10-23 00:50:23,824 [wrapper] pandaids: 6853469833
[2025-10-23 02:50:23] 2025-10-23 00:50:23,847 [wrapper] cleanup supervisor_pilot 17347 11971
[2025-10-23 02:50:23] 2025-10-23 00:50:23,849 [wrapper] Test setup, not cleaning
[2025-10-23 02:50:23] 2025-10-23 00:50:23,850 [wrapper] apfmon messages muted
[2025-10-23 02:50:23] 2025-10-23 00:50:23,851 [wrapper] ==== wrapper stdout END ====
[2025-10-23 02:50:23] 2025-10-23 00:50:23,852 [wrapper] ==== wrapper stderr END ====
[2025-10-23 02:50:23]  *** Error codes and diagnostics ***
[2025-10-23 02:50:23]     "exeErrorCode": 0,
[2025-10-23 02:50:23]     "exeErrorDiag": "",
[2025-10-23 02:50:23]     "pilotErrorCode": 0,
[2025-10-23 02:50:23]     "pilotErrorDiag": "",
[2025-10-23 02:50:23]  *** Listing of results directory ***
[2025-10-23 02:50:24] total 425352
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user    557409 Oct 22 14:20 pilot3.tar.gz
[2025-10-23 02:50:24] -rwx------ 1 mf493845 unix-user     36292 Oct 22 14:40 runpilot2-wrapper.sh
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user      5112 Oct 22 14:40 queuedata.json
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user       100 Oct 23 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-23 02:50:24] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 23 00:55 run_atlas
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user       105 Oct 23 00:55 job.xml
[2025-10-23 02:50:24] -rw-r--r-- 2 mf493845 unix-user 228333814 Oct 23 01:53 EVNT.46771634._003527.pool.root.1
[2025-10-23 02:50:24] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 23 01:53 start_atlas.sh
[2025-10-23 02:50:24] drwxrwx--x 2 mf493845 unix-user       100 Oct 23 01:53 shared
[2025-10-23 02:50:24] -rw-r--r-- 2 mf493845 unix-user    569680 Oct 23 01:53 input.tar.gz
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user      6393 Oct 23 01:53 init_data.xml
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user         0 Oct 23 01:53 boinc_setup_complete
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user      8192 Oct 23 01:53 boinc_mmap_file
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user         0 Oct 23 01:53 boinc_lockfile
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user      2560 Oct 23 01:53 pandaJob.out
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user    978084 Oct 23 01:54 agis_schedconf.cvmfs.json
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user   1560740 Oct 23 01:54 agis_ddmendpoints.agis.ALL.json
[2025-10-23 02:50:24] drwx------ 5 mf493845 unix-user       440 Oct 23 01:54 pilot3
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user 201687582 Oct 23 02:49 HITS.46771637._087095.pool.root.1
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user      1029 Oct 23 02:49 memory_monitor_summary.json
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user    309980 Oct 23 02:49 log.46771637._087095.job.log.tgz.1
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user      7778 Oct 23 02:49 heartbeat.json
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user        95 Oct 23 02:50 pilot_heartbeat.json
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user      4907 Oct 23 02:50 pilotlog.txt
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user    519148 Oct 23 02:50 log.46771637._087095.job.log.1
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user       357 Oct 23 02:50 output.list
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user       620 Oct 23 02:50 runtime_log
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user    849920 Oct 23 02:50 result.tar.gz
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user      9076 Oct 23 02:50 runtime_log.err
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user       644 Oct 23 02:50 PZKKDmmJnV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKk5NDmDhLH3n.diag
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user     22116 Oct 23 02:50 stderr.txt
[2025-10-23 02:50:24] HITS file was successfully produced:
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user 201687582 Oct 23 02:49 shared/HITS.pool.root.1
[2025-10-23 02:50:24]  *** Contents of shared directory: ***
[2025-10-23 02:50:24] total 421356
[2025-10-23 02:50:24] -rw-r--r-- 2 mf493845 unix-user 228333814 Oct 23 01:53 ATLAS.root_0
[2025-10-23 02:50:24] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 23 01:53 start_atlas.sh
[2025-10-23 02:50:24] -rw-r--r-- 2 mf493845 unix-user    569680 Oct 23 01:53 input.tar.gz
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user 201687582 Oct 23 02:49 HITS.pool.root.1
[2025-10-23 02:50:24] -rw------- 1 mf493845 unix-user    849920 Oct 23 02:50 result.tar.gz
02:50:25 (1380): run_atlas exited; CPU time 21169.488450
02:50:25 (1380): called boinc_finish(0)

</stderr_txt>
]]>

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