Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 15:20:20 (1052): vboxwrapper version 26210
2025-10-22 15:20:20 (1052): BOINC client version: 8.2.4
2025-10-22 15:20:21 (1052): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-10-22 15:20:21 (1052): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 15:20:21 (1052): Create VM. (boinc_d5cddfd9e978f2cb, slot#1)
2025-10-22 15:20:22 (1052): Setting Memory Size for VM. (4400MB)
2025-10-22 15:20:22 (1052): Setting CPU Count for VM. (4)
2025-10-22 15:20:22 (1052): Setting Chipset Options for VM.
2025-10-22 15:20:23 (1052): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 15:20:23 (1052): Setting Boot Options for VM.
2025-10-22 15:20:23 (1052): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 15:20:24 (1052): Enabling VM Network Access.
2025-10-22 15:20:24 (1052): Disabling USB Support for VM.
2025-10-22 15:20:24 (1052): Disabling COM Port Support for VM.
2025-10-22 15:20:24 (1052): Disabling LPT Port Support for VM.
2025-10-22 15:20:25 (1052): Disabling Audio Support for VM.
2025-10-22 15:20:25 (1052): Disabling Clipboard Support for VM.
2025-10-22 15:20:25 (1052): Disabling Drag and Drop Support for VM.
2025-10-22 15:20:25 (1052): Adding storage controller(s) to VM.
2025-10-22 15:20:26 (1052): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 15:20:26 (1052): Adding VirtualBox Guest Additions to VM.
2025-10-22 15:20:26 (1052): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 15:20:27 (1052): forwarding host port 57330 to guest port 80
2025-10-22 15:20:27 (1052): Enabling remote desktop for VM.
2025-10-22 15:20:27 (1052): Required extension pack not installed, remote desktop not enabled.
2025-10-22 15:20:27 (1052): Enabling shared directory for VM.
2025-10-22 15:20:28 (1052): Starting VM using VBoxManage interface. (boinc_d5cddfd9e978f2cb, slot#1)
2025-10-22 15:20:32 (1052): Successfully started VM. (PID = '15148')
2025-10-22 15:20:32 (1052): Reporting VM Process ID to BOINC.
2025-10-22 15:20:32 (1052): Guest Log: BIOS: VirtualBox 7.2.0
2025-10-22 15:20:32 (1052): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 15:20:32 (1052): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-22 15:20:32 (1052): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 15:20:32 (1052): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 15:20:32 (1052): Detected: Web Application Enabled (http://localhost:57330)
2025-10-22 15:20:32 (1052): Preference change detected
2025-10-22 15:20:32 (1052): Setting CPU throttle for VM. (80%)
2025-10-22 15:20:33 (1052): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 15:20:34 (1052): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 15:20:34 (1052): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 15:20:37 (1052): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 15:20:37 (1052): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 15:20:37 (1052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 15:20:43 (1052): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 15:20:43 (1052): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-22 15:20:53 (1052): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 15:20:53 (1052): Guest Log: 00:00:00.000172 main     Log opened 2025-10-22T15:20:51.330283000Z
2025-10-22 15:20:53 (1052): Guest Log: 00:00:00.000297 main     OS Product: Linux
2025-10-22 15:20:53 (1052): Guest Log: 00:00:00.000339 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 15:20:53 (1052): Guest Log: 00:00:00.000372 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 15:20:53 (1052): Guest Log: 00:00:00.000403 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 15:20:53 (1052): Guest Log: 00:00:00.000404 main     Process ID: 1306
2025-10-22 15:20:53 (1052): Guest Log: 00:00:00.000405 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 15:20:53 (1052): Guest Log: 00:00:00.003627 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 15:20:53 (1052): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 15:20:53 (1052): Guest Log: [INFO] Mounting shared directory
2025-10-22 15:20:54 (1052): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 15:20:57 (1052): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 15:20:57 (1052): Guest Log: [INFO] Detected branch: prod
2025-10-22 15:20:57 (1052): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 15:20:57 (1052): Guest Log: Copying input files
2025-10-22 15:21:00 (1052): Guest Log: Copied input files into RunAtlas.
2025-10-22 15:21:00 (1052): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 15:21:00 (1052): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 15:21:00 (1052): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 15:21:00 (1052): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 15:21:03 (1052): Guest Log: 00:00:10.033555 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 292 803 000ns (GuestNow=1 761 160 863 629 713 000 ns GuestLast=1 761 146 451 336 910 000 ns fSetTimeLastLoop=true )
2025-10-22 15:22:05 (1052): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 15:22:06 (1052): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 15:22:06 (1052): Guest Log: 2.6.3.0 1583 1 32172 152005 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 15:22:07 (1052): Guest Log: copied the webapp to /var/www
2025-10-22 15:22:07 (1052): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-22 15:22:07 (1052): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-22 15:22:07 (1052): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 15:22:07 (1052): Guest Log:  *** Starting ATLAS job. (PandaID=6853468471 taskID=46771637) ***
2025-10-22 17:00:34 (1052): Status Report: Elapsed Time: '6000.000000'
2025-10-22 17:00:34 (1052): Status Report: CPU Time: '10352.765625'
2025-10-22 18:40:37 (1052): Status Report: Elapsed Time: '12000.000000'
2025-10-22 18:40:37 (1052): Status Report: CPU Time: '21992.078125'
2025-10-22 20:20:39 (1052): Status Report: Elapsed Time: '18000.000000'
2025-10-22 20:20:39 (1052): Status Report: CPU Time: '32958.812500'
2025-10-22 22:00:41 (1052): Status Report: Elapsed Time: '24000.000000'
2025-10-22 22:00:41 (1052): Status Report: CPU Time: '43741.046875'
2025-10-22 22:29:40 (1052): Guest Log:  *** Job finished ***
2025-10-22 22:29:40 (1052): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:27,006 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:27,006 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:31,798 | INFO     | [monitor] cgroup control has ended
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:32,499 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140692273157952)>', '<ExcThread(monitor, started 140691350992640)>']
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:33,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:33,016 | INFO     | [monitor] control thread has ended
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,504 | INFO     | all workflow threads have been joined
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,505 | INFO     | end of generic workflow (traces error code: 0)
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,505 | INFO     | traces error code: 0
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,505 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,639 [wrapper] ==== pilot stdout END ====
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,668 [wrapper] ==== wrapper stdout RESUME ====
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,698 [wrapper] pilotpid: 6008
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,726 [wrapper] Pilot exit status: 0
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:37,915 [wrapper] pandaids: 6853468471
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:38,115 [wrapper] cleanup supervisor_pilot 31976 6009
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:38,144 [wrapper] Test setup, not cleaning
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:38,177 [wrapper] apfmon messages muted
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:38,195 [wrapper] ==== wrapper stdout END ====
2025-10-22 22:29:40 (1052): Guest Log: 2025-10-23 02:29:38,213 [wrapper] ==== wrapper stderr END ====
2025-10-22 22:29:40 (1052): Guest Log:  *** Error codes and diagnostics ***
2025-10-22 22:29:40 (1052): Guest Log:     "exeErrorCode": 0,
2025-10-22 22:29:40 (1052): Guest Log:     "exeErrorDiag": "",
2025-10-22 22:29:40 (1052): Guest Log:     "pilotErrorCode": 0,
2025-10-22 22:29:40 (1052): Guest Log:     "pilotErrorDiag": "",
2025-10-22 22:29:40 (1052): Guest Log:  *** Listing of results directory ***
2025-10-22 22:29:40 (1052): Guest Log: total 212192
2025-10-22 22:29:40 (1052): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 22 11:24 pilot3.tar.gz
2025-10-22 22:29:40 (1052): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 22 11:50 queuedata.json
2025-10-22 22:29:40 (1052): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 22 11:51 runpilot2-wrapper.sh
2025-10-22 22:29:40 (1052): Guest Log: -rwxr-xr-x. 1 atlas atlas      9005 Oct 22 19:20 init_data.xml
2025-10-22 22:29:40 (1052): Guest Log: -rwxr-xr-x. 1 atlas atlas    569678 Oct 22 19:20 input.tar.gz
2025-10-22 22:29:40 (1052): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 22 19:20 start_atlas.sh
2025-10-22 22:29:40 (1052): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 22 19:20 EVNT.46771634._003493.pool.root.1 -> /data/./ATLAS.root_0
2025-10-22 22:29:40 (1052): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 22 19:22 pandaJob.out
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas    978039 Oct 22 19:23 agis_schedconf.cvmfs.json
2025-10-22 22:29:40 (1052): Guest Log: drwx------. 5 atlas atlas      4096 Oct 22 19:24 pilot3
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas 205927735 Oct 23 02:27 HITS.46771637._086436.pool.root.1
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas      1026 Oct 23 02:28 memory_monitor_summary.json
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 23 02:28 agis_ddmendpoints.agis.ALL.json
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas    529416 Oct 23 02:28 log.46771637._086436.job.log.tgz.1
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas      7808 Oct 23 02:28 heartbeat.json
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas        95 Oct 23 02:29 pilot_heartbeat.json
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 23 02:29 pilotlog.txt
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas   3230058 Oct 23 02:29 log.46771637._086436.job.log.1
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas       357 Oct 23 02:29 output.list
2025-10-22 22:29:40 (1052): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 23 02:29 runtime_log
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas   3778560 Oct 23 02:29 result.tar.gz
2025-10-22 22:29:40 (1052): Guest Log: -rw-r--r--. 1 atlas atlas      8604 Oct 23 02:29 runtime_log.err
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas       647 Oct 23 02:29 QmTLDmeYmV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqc5NDmbGAGvm.diag
2025-10-22 22:29:40 (1052): Guest Log: Looking for outputfile HITS.46771637._086436.pool.root.1
2025-10-22 22:29:40 (1052): Guest Log: HITS file was successfully produced
2025-10-22 22:29:40 (1052): Guest Log: -rw-------. 1 atlas atlas 205927735 Oct 23 02:27 /home/atlas/RunAtlas/HITS.46771637._086436.pool.root.1
2025-10-22 22:29:41 (1052): Guest Log: Successfully finished the ATLAS job!
2025-10-22 22:29:41 (1052): Guest Log: Copying the results back to the shared directory!
2025-10-22 22:29:42 (1052): Guest Log:  *** Contents of shared directory: ***
2025-10-22 22:29:42 (1052): Guest Log: total 428768
2025-10-22 22:29:42 (1052): Guest Log: -rwxrwxrwx. 1 root root 228744078 Oct 22 19:20 ATLAS.root_0
2025-10-22 22:29:42 (1052): Guest Log: -rwxrwxrwx. 1 root root 205927735 Oct 23 02:29 HITS.pool.root.1
2025-10-22 22:29:42 (1052): Guest Log: -rwxrwxrwx. 1 root root      9005 Oct 22 19:20 init_data.xml
2025-10-22 22:29:42 (1052): Guest Log: -rwxrwxrwx. 1 root root    569678 Oct 22 19:19 input.tar.gz
2025-10-22 22:29:42 (1052): Guest Log: -rwxrwxrwx. 1 root root   3778560 Oct 23 02:29 result.tar.gz
2025-10-22 22:29:42 (1052): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 22 19:19 start_atlas.sh
2025-10-22 22:29:42 (1052): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-22 22:29:42 (1052): VM Completion File Detected.
2025-10-22 22:29:42 (1052): Powering off VM.
2025-10-22 22:29:42 (1052): Successfully stopped VM.
2025-10-22 22:29:42 (1052): Deregistering VM. (boinc_d5cddfd9e978f2cb, slot#1)
2025-10-22 22:29:42 (1052): Removing network bandwidth throttle group from VM.
2025-10-22 22:29:42 (1052): Removing VM from VirtualBox.
2025-10-22 22:29:48 (1052): called boinc_finish(0)

</stderr_txt>
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