Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:29:59 (3314338): wrapper (7.7.26015): starting
12:29:59 (3314338): wrapper: running run_atlas (--nthreads 10)
[2025-10-22 12:29:59] Arguments: --nthreads 10
[2025-10-22 12:29:59] Threads: 10
[2025-10-22 12:29:59] Checking for CVMFS
[2025-10-22 12:29:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 12:29:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 12:29:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 12:30:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 12:30:00] 2.13.2.0 1448902 143902 750060 152001 0 78 17251781 21551105 11641 16776704 0 113335338 99.473 150901983 28725 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-22 12:30:00] CVMFS is ok
[2025-10-22 12:30:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 12:30:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 12:30:00] Further information can be found at the LHC@home message board.
[2025-10-22 12:30:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 12:30:00] Checking for apptainer binary...
[2025-10-22 12:30:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 12:30:00] Running /usr/bin/apptainer --version
[2025-10-22 12:30:00] apptainer version 1.4.3-1.el9
[2025-10-22 12:30:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 12:30:00] c-16-30.aglt2.org
[2025-10-22 12:30:00] apptainer works
[2025-10-22 12:30:00] Set ATHENA_PROC_NUMBER=10
[2025-10-22 12:30:00] Set ATHENA_CORE_NUMBER=10
[2025-10-22 12:30:00] Starting ATLAS job with PandaID=6852939229
[2025-10-22 12:30:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/condor/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:49:18 (452330): wrapper (7.7.26015): starting
16:49:18 (452330): wrapper: running run_atlas (--nthreads 10)
[2025-10-22 16:49:18] Arguments: --nthreads 10
[2025-10-22 16:49:18] Threads: 10
[2025-10-22 16:49:18] This job has been restarted, cleaning up previous attempt
[2025-10-22 16:49:18] Checking for CVMFS
[2025-10-22 16:49:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 16:49:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 16:49:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 16:49:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 16:49:18] 2.13.2.0 1448902 144161 758560 152009 1 334 14668819 21551105 16969 16776704 0 114627275 99.472 152882960 28741 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-22 16:49:18] CVMFS is ok
[2025-10-22 16:49:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 16:49:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 16:49:18] Further information can be found at the LHC@home message board.
[2025-10-22 16:49:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 16:49:18] Checking for apptainer binary...
[2025-10-22 16:49:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 16:49:18] Running /usr/bin/apptainer --version
[2025-10-22 16:49:18] apptainer version 1.4.3-1.el9
[2025-10-22 16:49:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 16:49:19] c-16-30.aglt2.org
[2025-10-22 16:49:19] apptainer works
[2025-10-22 16:49:19] Set ATHENA_PROC_NUMBER=10
[2025-10-22 16:49:19] Set ATHENA_CORE_NUMBER=10
[2025-10-22 16:49:19] Starting ATLAS job with PandaID=6852939229
[2025-10-22 16:49:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/condor/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 20:07:18]  *** The last 200 lines of the pilot log: ***
[2025-10-22 20:07:18] 2025-10-23 00:06:44,777 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 20:07:18] 2025-10-23 00:06:44,777 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 20:07:18] 2025-10-23 00:06:44,777 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 20:07:18] 2025-10-23 00:06:44,783 | INFO     | fitting pss+swap vs Time
[2025-10-22 20:07:18] 2025-10-23 00:06:44,783 | INFO     | sum of square deviations: 2264173770.0464005
[2025-10-22 20:07:18] 2025-10-23 00:06:44,785 | INFO     | sum of deviations: 14079342365.35051
[2025-10-22 20:07:18] 2025-10-23 00:06:44,785 | INFO     | mean x: 1761172087.8402061
[2025-10-22 20:07:18] 2025-10-23 00:06:44,785 | INFO     | mean y: 2231712.237113402
[2025-10-22 20:07:18] 2025-10-23 00:06:44,785 | INFO     | -- intersect: -10949288492.191925
[2025-10-22 20:07:18] 2025-10-23 00:06:44,785 | INFO     | intersect: -10949288492.191925
[2025-10-22 20:07:18] 2025-10-23 00:06:44,786 | INFO     | chi2: 2.6195338065822287
[2025-10-22 20:07:18] 2025-10-23 00:06:44,786 | INFO     | sum of square deviations: 2093613956.952381
[2025-10-22 20:07:18] 2025-10-23 00:06:44,788 | INFO     | sum of deviations: 25192027500.301598
[2025-10-22 20:07:18] 2025-10-23 00:06:44,788 | INFO     | mean x: 1761171935.3492064
[2025-10-22 20:07:18] 2025-10-23 00:06:44,788 | INFO     | mean y: 2241440.6772486772
[2025-10-22 20:07:18] 2025-10-23 00:06:44,788 | INFO     | -- intersect: -21189579372.678997
[2025-10-22 20:07:18] 2025-10-23 00:06:44,788 | INFO     | intersect: -21189579372.678997
[2025-10-22 20:07:18] 2025-10-23 00:06:44,789 | INFO     | chi2: 1.9493585149721036
[2025-10-22 20:07:18] 2025-10-23 00:06:44,789 | INFO     | current chi2=1.9493585149721036 (change=25.583761886414425 %)
[2025-10-22 20:07:18] 2025-10-23 00:06:44,789 | INFO     | sum of square deviations: 1931811144.4293468
[2025-10-22 20:07:18] 2025-10-23 00:06:44,790 | INFO     | sum of deviations: 24182605292.858677
[2025-10-22 20:07:18] 2025-10-23 00:06:44,791 | INFO     | mean x: 1761171782.8423913
[2025-10-22 20:07:18] 2025-10-23 00:06:44,791 | INFO     | mean y: 2240482.684782609
[2025-10-22 20:07:18] 2025-10-23 00:06:44,791 | INFO     | -- intersect: -22044284199.71562
[2025-10-22 20:07:18] 2025-10-23 00:06:44,791 | INFO     | intersect: -22044284199.71562
[2025-10-22 20:07:18] 2025-10-23 00:06:44,791 | INFO     | chi2: 1.9507359663010597
[2025-10-22 20:07:18] 2025-10-23 00:06:44,792 | INFO     | current chi2=1.9507359663010597 (change=-0.070661775059673 %)
[2025-10-22 20:07:18] 2025-10-23 00:06:44,792 | INFO     | right removable region: 183
[2025-10-22 20:07:18] 2025-10-23 00:06:44,792 | INFO     | sum of square deviations: 2093573696.952381
[2025-10-22 20:07:18] 2025-10-23 00:06:44,793 | INFO     | sum of deviations: -20251986822.444447
[2025-10-22 20:07:18] 2025-10-23 00:06:44,794 | INFO     | mean x: 1761172240.3492064
[2025-10-22 20:07:18] 2025-10-23 00:06:44,794 | INFO     | mean y: 2262184.703703704
[2025-10-22 20:07:18] 2025-10-23 00:06:44,794 | INFO     | -- intersect: 17038795006.800175
[2025-10-22 20:07:18] 2025-10-23 00:06:44,794 | INFO     | intersect: 17038795006.800175
[2025-10-22 20:07:18] 2025-10-23 00:06:44,794 | INFO     | chi2: 0.8199030745621174
[2025-10-22 20:07:18] 2025-10-23 00:06:44,794 | INFO     | current chi2=0.8199030745621174 (change=68.70042018538155 %)
[2025-10-22 20:07:18] 2025-10-23 00:06:44,795 | INFO     | sum of square deviations: 1931764486.3260787
[2025-10-22 20:07:18] 2025-10-23 00:06:44,796 | INFO     | sum of deviations: -20422576343.70652
[2025-10-22 20:07:18] 2025-10-23 00:06:44,796 | INFO     | mean x: 1761172392.8586957
[2025-10-22 20:07:18] 2025-10-23 00:06:44,796 | INFO     | mean y: 2262315.972826087
[2025-10-22 20:07:18] 2025-10-23 00:06:44,797 | INFO     | -- intersect: 18621342386.126743
[2025-10-22 20:07:18] 2025-10-23 00:06:44,797 | INFO     | intersect: 18621342386.126743
[2025-10-22 20:07:18] 2025-10-23 00:06:44,797 | INFO     | chi2: 0.805538276990221
[2025-10-22 20:07:18] 2025-10-23 00:06:44,797 | INFO     | current chi2=0.805538276990221 (change=1.7520116727904957 %)
[2025-10-22 20:07:18] 2025-10-23 00:06:44,797 | INFO     | left removable region: 20
[2025-10-22 20:07:18] 2025-10-23 00:06:44,798 | INFO     | sum of square deviations: 1342972099.644176
[2025-10-22 20:07:18] 2025-10-23 00:06:44,799 | INFO     | sum of deviations: -754320232.558281
[2025-10-22 20:07:18] 2025-10-23 00:06:44,799 | INFO     | mean x: 1761172362.3619633
[2025-10-22 20:07:18] 2025-10-23 00:06:44,799 | INFO     | mean y: 2263654.619631902
[2025-10-22 20:07:18] 2025-10-23 00:06:44,799 | INFO     | -- intersect: 991478505.995978
[2025-10-22 20:07:18] 2025-10-23 00:06:44,799 | INFO     | intersect: 991478505.995978
[2025-10-22 20:07:18] 2025-10-23 00:06:44,800 | INFO     | chi2: 0.06854412501347754
[2025-10-22 20:07:18] 2025-10-23 00:06:44,800 | INFO     | -- intersect: 991478505.995978
[2025-10-22 20:07:18] 2025-10-23 00:06:44,800 | INFO     | current memory leak: -0.56 B/s (using 163 data points, chi2=0.07)
[2025-10-22 20:07:18] 2025-10-23 00:06:44,801 | INFO     | could have reported an average CPU frequency of 2920 MHz (10 samples)
[2025-10-22 20:07:18] 2025-10-23 00:06:44,801 | INFO     | ..............................
[2025-10-22 20:07:18] 2025-10-23 00:06:44,801 | INFO     | . Timing measurements:
[2025-10-22 20:07:18] 2025-10-23 00:06:44,801 | INFO     | . get job = 0 s
[2025-10-22 20:07:18] 2025-10-23 00:06:44,801 | INFO     | . initial setup = 2 s
[2025-10-22 20:07:18] 2025-10-23 00:06:44,801 | INFO     | . payload setup = 6 s
[2025-10-22 20:07:18] 2025-10-23 00:06:44,801 | INFO     | . stage-in = 0 s
[2025-10-22 20:07:18] 2025-10-23 00:06:44,802 | INFO     | . payload execution = 11793 s
[2025-10-22 20:07:18] 2025-10-23 00:06:44,802 | INFO     | . stage-out = 2 s
[2025-10-22 20:07:18] 2025-10-23 00:06:44,802 | INFO     | . log creation = 0 s
[2025-10-22 20:07:18] 2025-10-23 00:06:44,802 | INFO     | ..............................
[2025-10-22 20:07:18] 2025-10-23 00:06:45,108 | INFO     | 
[2025-10-22 20:07:18] 2025-10-23 00:06:45,108 | INFO     | job summary report
[2025-10-22 20:07:18] 2025-10-23 00:06:45,109 | INFO     | --------------------------------------------------
[2025-10-22 20:07:18] 2025-10-23 00:06:45,109 | INFO     | PanDA job id: 6852939229
[2025-10-22 20:07:18] 2025-10-23 00:06:45,109 | INFO     | task id: 46771637
[2025-10-22 20:07:18] 2025-10-23 00:06:45,109 | INFO     | errors: (none)
[2025-10-22 20:07:18] 2025-10-23 00:06:45,109 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 20:07:18] 2025-10-23 00:06:45,109 | INFO     | pilot state: finished 
[2025-10-22 20:07:18] 2025-10-23 00:06:45,109 | INFO     | transexitcode: 0
[2025-10-22 20:07:18] 2025-10-23 00:06:45,109 | INFO     | exeerrorcode: 0
[2025-10-22 20:07:18] 2025-10-23 00:06:45,110 | INFO     | exeerrordiag: 
[2025-10-22 20:07:18] 2025-10-23 00:06:45,110 | INFO     | exitcode: 0
[2025-10-22 20:07:18] 2025-10-23 00:06:45,110 | INFO     | exitmsg: OK
[2025-10-22 20:07:18] 2025-10-23 00:06:45,110 | INFO     | cpuconsumptiontime: 78116 s
[2025-10-22 20:07:18] 2025-10-23 00:06:45,110 | INFO     | nevents: 400
[2025-10-22 20:07:18] 2025-10-23 00:06:45,110 | INFO     | neventsw: 0
[2025-10-22 20:07:18] 2025-10-23 00:06:45,110 | INFO     | pid: 473953
[2025-10-22 20:07:18] 2025-10-23 00:06:45,110 | INFO     | pgrp: 473953
[2025-10-22 20:07:18] 2025-10-23 00:06:45,111 | INFO     | corecount: 10
[2025-10-22 20:07:18] 2025-10-23 00:06:45,111 | INFO     | event service: False
[2025-10-22 20:07:18] 2025-10-23 00:06:45,111 | INFO     | sizes: {0: 2348666, 1: 2348921, 2: 2348921, 6: 2349211, 12: 2349239, 11804: 2379138, 11807: 2388158, 11810: 2388242, 11816: 2388436}
[2025-10-22 20:07:18] 2025-10-23 00:06:45,111 | INFO     | --------------------------------------------------
[2025-10-22 20:07:18] 2025-10-23 00:06:45,111 | INFO     | 
[2025-10-22 20:07:18] 2025-10-23 00:06:45,111 | INFO     | executing command: ls -lF /var/lib/condor/boinchome/slots/1
[2025-10-22 20:07:18] 2025-10-23 00:06:45,142 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,143 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,143 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,143 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,143 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,144 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,144 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,144 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,145 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 20:07:18] 2025-10-23 00:06:45,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 20:07:18] 2025-10-23 00:06:45,146 | INFO     | job 6852939229 has completed (purged errors)
[2025-10-22 20:07:18] 2025-10-23 00:06:45,146 | INFO     | overall cleanup function is called
[2025-10-22 20:07:18] 2025-10-23 00:06:46,153 | INFO     | --- collectZombieJob: --- 10, [473953]
[2025-10-22 20:07:18] 2025-10-23 00:06:46,153 | INFO     | zombie collector waiting for pid 473953
[2025-10-22 20:07:18] 2025-10-23 00:06:46,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 20:07:18] 2025-10-23 00:06:46,154 | INFO     | collected zombie processes
[2025-10-22 20:07:18] 2025-10-23 00:06:46,154 | INFO     | will attempt to kill all subprocesses of pid=473953
[2025-10-22 20:07:18] 2025-10-23 00:06:46,669 | INFO     | process IDs to be killed: [473953] (in reverse order)
[2025-10-22 20:07:18] 2025-10-23 00:06:46,812 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 20:07:18] 2025-10-23 00:06:46,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 20:07:18] 2025-10-23 00:06:46,835 | INFO     | did not find any defunct processes belonging to 473953
[2025-10-22 20:07:18] 2025-10-23 00:06:46,857 | INFO     | did not find any defunct processes belonging to 473953
[2025-10-22 20:07:18] 2025-10-23 00:06:46,858 | INFO     | ready for new job
[2025-10-22 20:07:18] 2025-10-23 00:06:46,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 20:07:18] 2025-10-23 00:06:46,860 | INFO     | ***************************************
[2025-10-22 20:07:18] 2025-10-23 00:06:46,860 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 20:07:18] 2025-10-23 00:06:46,861 | INFO     | ***************************************
[2025-10-22 20:07:18] 2025-10-23 00:06:46,861 | INFO     | 
[2025-10-22 20:07:18] 2025-10-23 00:06:46,863 | INFO     | architecture information:
[2025-10-22 20:07:18] 2025-10-23 00:06:46,864 | INFO     | executing command: cat /etc/os-release
[2025-10-22 20:07:18] 2025-10-23 00:06:46,882 | INFO     | cat /etc/os-release:
[2025-10-22 20:07:18] NAME="CentOS Linux"
[2025-10-22 20:07:18] VERSION="7 (Core)"
[2025-10-22 20:07:18] ID="centos"
[2025-10-22 20:07:18] ID_LIKE="rhel fedora"
[2025-10-22 20:07:18] VERSION_ID="7"
[2025-10-22 20:07:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 20:07:18] ANSI_COLOR="0;31"
[2025-10-22 20:07:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 20:07:18] HOME_URL="https://www.centos.org/"
[2025-10-22 20:07:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 20:07:18] 
[2025-10-22 20:07:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 20:07:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 20:07:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 20:07:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 20:07:18] 
[2025-10-22 20:07:18] 2025-10-23 00:06:46,882 | INFO     | ***************************************
[2025-10-22 20:07:18] 2025-10-23 00:06:47,395 | INFO     | executing command: df -mP /var/lib/condor/boinchome/slots/1
[2025-10-22 20:07:18] 2025-10-23 00:06:47,415 | INFO     | sufficient remaining disk space (1793468661760 B)
[2025-10-22 20:07:18] 2025-10-23 00:06:47,415 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 20:07:18] 2025-10-23 00:06:47,415 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 20:07:18] 2025-10-23 00:06:47,416 | INFO     | update_server=False
[2025-10-22 20:07:18] 2025-10-23 00:06:47,416 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 20:07:18] 2025-10-23 00:06:47,416 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 20:07:18] 2025-10-23 00:06:47,416 | INFO     | aborting loop
[2025-10-22 20:07:18] 2025-10-23 00:06:47,416 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 20:07:18] 2025-10-23 00:06:47,764 | INFO     | all job control threads have been joined
[2025-10-22 20:07:18] 2025-10-23 00:06:48,015 | INFO     | all payload control threads have been joined
[2025-10-22 20:07:18] 2025-10-23 00:06:48,422 | INFO     | [job] retrieve thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:48,425 | INFO     | [job] job monitor thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:48,430 | INFO     | [payload] validate_post thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:48,445 | INFO     | all data control threads have been joined
[2025-10-22 20:07:18] 2025-10-23 00:06:48,579 | INFO     | [job] validate thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:48,770 | INFO     | [job] control thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:48,966 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,020 | INFO     | [payload] control thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,423 | INFO     | [data] copytool_out thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,450 | INFO     | [data] control thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,582 | INFO     | [payload] failed_post thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,661 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 20:07:18] 2025-10-23 00:06:49,664 | INFO     | [data] copytool_in thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,680 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,791 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,820 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:49,945 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 20:07:18] 2025-10-23 00:06:50,950 | INFO     | [job] queue monitor thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:52,517 | INFO     | [monitor] cgroup control has ended
[2025-10-22 20:07:18] 2025-10-23 00:06:53,683 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 20:07:18] 2025-10-23 00:06:54,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140318929344320)>', '<ExcThread(monitor, started 140318418642688)>']
[2025-10-22 20:07:18] 2025-10-23 00:06:59,845 | INFO     | all workflow threads have been joined
[2025-10-22 20:07:18] 2025-10-23 00:06:59,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 20:07:18] 2025-10-23 00:06:59,846 | INFO     | traces error code: 0
[2025-10-22 20:07:18] 2025-10-23 00:06:59,846 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 20:07:18] 2025-10-23 00:07:17,973 | INFO     | PID=460511 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-22 20:07:18] 2025-10-23 00:07:17,974 | INFO     | .. there are 16 such processes running
[2025-10-22 20:07:18] 2025-10-23 00:07:17,974 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 20:07:18] 2025-10-23 00:07:17,974 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 20:07:18] 2025-10-23 00:07:17,974 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 20:07:18] 2025-10-23 00:07:17,974 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 20:07:18] 2025-10-23 00:07:17,975 | INFO     | [monitor] control thread has ended
[2025-10-22 20:07:18] 2025-10-23 00:07:18,112 [wrapper] ==== pilot stdout END ====
[2025-10-22 20:07:18] 2025-10-23 00:07:18,114 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 20:07:18] 2025-10-23 00:07:18,117 [wrapper] pilotpid: 460511
[2025-10-22 20:07:18] 2025-10-23 00:07:18,121 [wrapper] Pilot exit status: 0
[2025-10-22 20:07:18] 2025-10-23 00:07:18,145 [wrapper] pandaids: 6852939229 6852939229
[2025-10-22 20:07:18] 2025-10-23 00:07:18,231 [wrapper] cleanup supervisor_pilot 1173729 460513
[2025-10-22 20:07:18] 2025-10-23 00:07:18,234 [wrapper] Test setup, not cleaning
[2025-10-22 20:07:18] 2025-10-23 00:07:18,239 [wrapper] apfmon messages muted
[2025-10-22 20:07:18] 2025-10-23 00:07:18,242 [wrapper] ==== wrapper stdout END ====
[2025-10-22 20:07:18] 2025-10-23 00:07:18,245 [wrapper] ==== wrapper stderr END ====
[2025-10-22 20:07:18]  *** Error codes and diagnostics ***
[2025-10-22 20:07:18]     "exeErrorCode": 0,
[2025-10-22 20:07:18]     "exeErrorDiag": "",
[2025-10-22 20:07:18]     "pilotErrorCode": 0,
[2025-10-22 20:07:18]     "pilotErrorDiag": "",
[2025-10-22 20:07:18]  *** Listing of results directory ***
[2025-10-22 20:07:18] total 652288
[2025-10-22 20:07:18] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas    557409 Oct 20 16:52 pilot3.tar.gz
[2025-10-22 20:07:18] -rwx------. 1 boincer umatlas     36292 Oct 20 17:20 runpilot2-wrapper.sh
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas      5112 Oct 20 17:22 queuedata.json
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas       100 Oct 22 12:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 20:07:18] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 22 12:29 run_atlas
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas       105 Oct 22 12:29 job.xml
[2025-10-22 20:07:18] -rw-r--r--. 3 boincer umatlas 231038996 Oct 22 12:29 EVNT.46771634._001816.pool.root.1
[2025-10-22 20:07:18] -rw-r--r--. 3 boincer umatlas 231038996 Oct 22 12:29 ATLAS.root_0
[2025-10-22 20:07:18] drwxrwx--x. 2 boincer umatlas        68 Oct 22 12:29 shared
[2025-10-22 20:07:18] -rw-r--r--. 2 boincer umatlas    569690 Oct 22 12:29 input.tar.gz
[2025-10-22 20:07:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 22 12:29 start_atlas.sh
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas         0 Oct 22 12:29 boinc_lockfile
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas      2561 Oct 22 16:49 pandaJob.out
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas    978023 Oct 22 16:49 agis_schedconf.cvmfs.json
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas      6549 Oct 22 20:00 init_data.xml
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas 197839541 Oct 22 20:05 HITS.46771637._050130.pool.root.1
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas       532 Oct 22 20:06 boinc_task_state.xml
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas        96 Oct 22 20:06 pilot_heartbeat.json
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas      1037 Oct 22 20:06 memory_monitor_summary.json
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas   1560740 Oct 22 20:06 agis_ddmendpoints.agis.ALL.json
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas    468430 Oct 22 20:06 log.46771637._050130.job.log.tgz.1
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas      7812 Oct 22 20:06 heartbeat.json
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas      8192 Oct 22 20:07 boinc_mmap_file
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas        29 Oct 22 20:07 wrapper_checkpoint.txt
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas       822 Oct 22 20:07 pilotlog.txt
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas   1595118 Oct 22 20:07 log.46771637._050130.job.log.1
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas       357 Oct 22 20:07 output.list
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas       620 Oct 22 20:07 runtime_log
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas   2078720 Oct 22 20:07 result.tar.gz
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas      8940 Oct 22 20:07 runtime_log.err
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas       780 Oct 22 20:07 Bf7NDmcTCV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhJzNDmux4Ekm.diag
[2025-10-22 20:07:18] -rw-r--r--. 1 boincer umatlas     23213 Oct 22 20:07 stderr.txt
[2025-10-22 20:07:18] HITS file was successfully produced:
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas 197839541 Oct 22 20:05 shared/HITS.pool.root.1
[2025-10-22 20:07:18]  *** Contents of shared directory: ***
[2025-10-22 20:07:18] total 421444
[2025-10-22 20:07:18] -rw-r--r--. 3 boincer umatlas 231038996 Oct 22 12:29 ATLAS.root_0
[2025-10-22 20:07:18] -rw-r--r--. 2 boincer umatlas    569690 Oct 22 12:29 input.tar.gz
[2025-10-22 20:07:18] -rw-r--r--. 2 boincer umatlas     15120 Oct 22 12:29 start_atlas.sh
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas 197839541 Oct 22 20:05 HITS.pool.root.1
[2025-10-22 20:07:18] -rw-------. 1 boincer umatlas   2078720 Oct 22 20:07 result.tar.gz
20:07:19 (452330): run_atlas exited; CPU time 78696.417423
20:07:19 (452330): called boinc_finish(0)

</stderr_txt>
]]>

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