Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 23:14:55 (47500): vboxwrapper version 26210
2025-10-22 23:14:55 (47500): BOINC client version: 8.0.2
2025-10-22 23:14:55 (47500): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-22 23:14:56 (47500): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 23:14:56 (47500): Create VM. (boinc_3d0735c931694631, slot#5)
2025-10-22 23:14:56 (47500): Setting Memory Size for VM. (4800MB)
2025-10-22 23:14:57 (47500): Setting CPU Count for VM. (8)
2025-10-22 23:14:57 (47500): Setting Chipset Options for VM.
2025-10-22 23:14:57 (47500): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 23:14:57 (47500): Setting Boot Options for VM.
2025-10-22 23:14:58 (47500): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 23:14:58 (47500): Enabling VM Network Access.
2025-10-22 23:14:58 (47500): Disabling USB Support for VM.
2025-10-22 23:14:59 (47500): Disabling COM Port Support for VM.
2025-10-22 23:14:59 (47500): Disabling LPT Port Support for VM.
2025-10-22 23:14:59 (47500): Disabling Audio Support for VM.
2025-10-22 23:14:59 (47500): Disabling Clipboard Support for VM.
2025-10-22 23:15:00 (47500): Disabling Drag and Drop Support for VM.
2025-10-22 23:15:00 (47500): Adding storage controller(s) to VM.
2025-10-22 23:15:00 (47500): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 23:15:01 (47500): Adding VirtualBox Guest Additions to VM.
2025-10-22 23:15:01 (47500): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 23:15:01 (47500): forwarding host port 65324 to guest port 80
2025-10-22 23:15:01 (47500): Enabling remote desktop for VM.
2025-10-22 23:15:02 (47500): Required extension pack not installed, remote desktop not enabled.
2025-10-22 23:15:02 (47500): Enabling shared directory for VM.
2025-10-22 23:15:02 (47500): Starting VM using VBoxManage interface. (boinc_3d0735c931694631, slot#5)
2025-10-22 23:15:08 (47500): Successfully started VM. (PID = '42568')
2025-10-22 23:15:08 (47500): Reporting VM Process ID to BOINC.
2025-10-22 23:15:08 (47500): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-22 23:15:08 (47500): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 23:15:08 (47500): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-22 23:15:08 (47500): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 23:15:08 (47500): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 23:15:08 (47500): Detected: Web Application Enabled (http://localhost:65324)
2025-10-22 23:15:08 (47500): Preference change detected
2025-10-22 23:15:08 (47500): Setting CPU throttle for VM. (50%)
2025-10-22 23:15:08 (47500): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 23:15:10 (47500): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 23:15:10 (47500): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 23:15:13 (47500): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 23:15:13 (47500): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 23:15:13 (47500): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 23:15:19 (47500): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 23:15:19 (47500): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-22 23:15:23 (47500): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 23:15:23 (47500): Guest Log: 00:00:00.000135 main     Log opened 2025-10-22T23:15:21.610815000Z
2025-10-22 23:15:23 (47500): Guest Log: 00:00:00.000274 main     OS Product: Linux
2025-10-22 23:15:23 (47500): Guest Log: 00:00:00.000301 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 23:15:23 (47500): Guest Log: 00:00:00.000324 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 23:15:23 (47500): Guest Log: 00:00:00.000347 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 23:15:23 (47500): Guest Log: 00:00:00.000348 main     Process ID: 1371
2025-10-22 23:15:23 (47500): Guest Log: 00:00:00.000348 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 23:15:23 (47500): Guest Log: 00:00:00.000901 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 23:15:23 (47500): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 23:15:23 (47500): Guest Log: [INFO] Mounting shared directory
2025-10-22 23:15:23 (47500): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 23:15:26 (47500): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 23:15:26 (47500): Guest Log: [INFO] Detected branch: prod
2025-10-22 23:15:26 (47500): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 23:15:26 (47500): Guest Log: Copying input files
2025-10-22 23:15:27 (47500): Guest Log: Copied input files into RunAtlas.
2025-10-22 23:15:27 (47500): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 23:15:27 (47500): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 23:15:27 (47500): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 23:15:27 (47500): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 23:15:33 (47500): Guest Log: 00:00:10.008121 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 925 955 000ns (GuestNow=1 761 189 332 538 862 000 ns GuestLast=1 761 174 921 612 907 000 ns fSetTimeLastLoop=true )
2025-10-22 23:15:37 (47500): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 23:15:37 (47500): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 23:15:37 (47500): Guest Log: 2.6.3.0 1650 0 30296 152020 4 1 3120538 4096000 0 65024 0 0 n/a 1292 474 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 23:15:37 (47500): Guest Log: copied the webapp to /var/www
2025-10-22 23:15:37 (47500): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-22 23:15:37 (47500): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-22 23:15:37 (47500): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 23:15:37 (47500): Guest Log:  *** Starting ATLAS job. (PandaID=6853307311 taskID=46771637) ***
2025-10-22 23:28:31 (47500): Guest Log:  *** Job finished ***
2025-10-22 23:28:31 (47500): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:20,712 | INFO     | [data] copytool_out thread has finished
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:21,105 | INFO     | [payload] run_realtimelog thread has finished
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:24,273 | INFO     | [data] queue_monitor thread has finished
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:25,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956506797888)>', '<ExcThread(monitor, started 139955904952064)>']
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:25,643 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:25,643 | INFO     | [monitor] control thread has ended
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,382 | INFO     | all workflow threads have been joined
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,382 | INFO     | end of generic workflow (traces error code: 0)
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,382 | INFO     | traces error code: 0
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,382 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,494 [wrapper] ==== pilot stdout END ====
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,497 [wrapper] ==== wrapper stdout RESUME ====
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,501 [wrapper] pilotpid: 6083
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,504 [wrapper] Pilot exit status: 0
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,588 [wrapper] pandaids: 6853307311
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,610 [wrapper] cleanup supervisor_pilot  6089 6084
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,614 [wrapper] Test setup, not cleaning
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,617 [wrapper] apfmon messages muted
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,620 [wrapper] ==== wrapper stdout END ====
2025-10-22 23:28:31 (47500): Guest Log: 2025-10-23 03:28:30,624 [wrapper] ==== wrapper stderr END ====
2025-10-22 23:28:31 (47500): Guest Log:  *** Error codes and diagnostics ***
2025-10-22 23:28:32 (47500): Guest Log:     "exeErrorCode": 65,
2025-10-22 23:28:32 (47500): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (98); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2025-10-22 23:28:32 (47500): Guest Log:     "pilotErrorCode": 1305,
2025-10-22 23:28:32 (47500): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (98); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2025-10-22 23:28:32 (47500): Guest Log:  *** Listing of results directory ***
2025-10-22 23:28:32 (47500): Guest Log: total 4528
2025-10-22 23:28:32 (47500): Guest Log: -rw-r--r--. 1 atlas atlas  557409 Oct 22 05:29 pilot3.tar.gz
2025-10-22 23:28:32 (47500): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Oct 22 05:58 queuedata.json
2025-10-22 23:28:32 (47500): Guest Log: -rwx------. 1 atlas atlas   36292 Oct 22 06:00 runpilot2-wrapper.sh
2025-10-22 23:28:32 (47500): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Oct 23 03:15 init_data.xml
2025-10-22 23:28:32 (47500): Guest Log: -rwxr-xr-x. 1 atlas atlas  569675 Oct 23 03:15 input.tar.gz
2025-10-22 23:28:32 (47500): Guest Log: -rwxr-xr-x. 1 atlas atlas   15120 Oct 23 03:15 start_atlas.sh
2025-10-22 23:28:32 (47500): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 23 03:15 EVNT.46771634._003276.pool.root.1 -> /data/./ATLAS.root_0
2025-10-22 23:28:32 (47500): Guest Log: -rw-r--r--. 1 atlas atlas    2559 Oct 23 03:15 pandaJob.out
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas  978108 Oct 23 03:16 agis_schedconf.cvmfs.json
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas 1560740 Oct 23 03:16 agis_ddmendpoints.agis.ALL.json
2025-10-22 23:28:32 (47500): Guest Log: drwx------. 5 atlas atlas    4096 Oct 23 03:16 pilot3
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas    1017 Oct 23 03:26 memory_monitor_summary.json
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas  242108 Oct 23 03:26 log.46771637._082092.job.log.tgz.1
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas      95 Oct 23 03:27 pilot_heartbeat.json
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas    9813 Oct 23 03:28 heartbeat.json
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas    4612 Oct 23 03:28 pilotlog.txt
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas  151885 Oct 23 03:28 log.46771637._082092.job.log.1
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas     188 Oct 23 03:28 output.list
2025-10-22 23:28:32 (47500): Guest Log: -rw-r--r--. 1 atlas atlas     620 Oct 23 03:28 runtime_log
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas  419840 Oct 23 03:28 result.tar.gz
2025-10-22 23:28:32 (47500): Guest Log: -rw-r--r--. 1 atlas atlas    8477 Oct 23 03:28 runtime_log.err
2025-10-22 23:28:32 (47500): Guest Log: -rw-------. 1 atlas atlas     645 Oct 23 03:28 jFYLDmZ4gV8n9Rq4apOajLDm4fhM0noT9bVof3QYDm54gMDmESiy5m.diag
2025-10-22 23:28:32 (47500): Guest Log: Looking for outputfile HITS.46771637._082092.pool.root.1
2025-10-22 23:28:32 (47500): Guest Log: No HITS file was produced
2025-10-22 23:28:32 (47500): Guest Log: Successfully finished the ATLAS job!
2025-10-22 23:28:32 (47500): Guest Log: Copying the results back to the shared directory!
2025-10-22 23:28:32 (47500): Guest Log:  *** Contents of shared directory: ***
2025-10-22 23:28:32 (47500): Guest Log: total 223760
2025-10-22 23:28:32 (47500): Guest Log: -rwxrwxrwx. 1 root root 228104656 Oct 23 03:14 ATLAS.root_0
2025-10-22 23:28:32 (47500): Guest Log: -rwxrwxrwx. 1 root root      9004 Oct 23 03:14 init_data.xml
2025-10-22 23:28:32 (47500): Guest Log: -rwxrwxrwx. 1 root root    569675 Oct 22 15:17 input.tar.gz
2025-10-22 23:28:32 (47500): Guest Log: -rwxrwxrwx. 1 root root    419840 Oct 23 03:28 result.tar.gz
2025-10-22 23:28:32 (47500): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 22 15:17 start_atlas.sh
2025-10-22 23:28:32 (47500): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-22 23:28:32 (47500): VM Completion File Detected.
2025-10-22 23:28:32 (47500): Powering off VM.
2025-10-22 23:28:33 (47500): Successfully stopped VM.
2025-10-22 23:28:33 (47500): Deregistering VM. (boinc_3d0735c931694631, slot#5)
2025-10-22 23:28:33 (47500): Removing network bandwidth throttle group from VM.
2025-10-22 23:28:33 (47500): Removing VM from VirtualBox.
2025-10-22 23:28:38 (47500): called boinc_finish(0)

</stderr_txt>
]]>

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