Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 07:17:00 (10316): vboxwrapper version 26210
2025-10-22 07:17:00 (10316): BOINC client version: 8.0.2
2025-10-22 07:17:01 (10316): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-10-22 07:17:01 (10316): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 07:17:02 (10316): Create VM. (boinc_b806adaac68161ef, slot#5)
2025-10-22 07:17:02 (10316): Setting Memory Size for VM. (4600MB)
2025-10-22 07:17:03 (10316): Setting CPU Count for VM. (6)
2025-10-22 07:17:03 (10316): Setting Chipset Options for VM.
2025-10-22 07:17:03 (10316): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 07:17:03 (10316): Setting Boot Options for VM.
2025-10-22 07:17:04 (10316): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 07:17:04 (10316): Enabling VM Network Access.
2025-10-22 07:17:05 (10316): Disabling USB Support for VM.
2025-10-22 07:17:05 (10316): Disabling COM Port Support for VM.
2025-10-22 07:17:05 (10316): Disabling LPT Port Support for VM.
2025-10-22 07:17:05 (10316): Disabling Audio Support for VM.
2025-10-22 07:17:06 (10316): Disabling Clipboard Support for VM.
2025-10-22 07:17:06 (10316): Disabling Drag and Drop Support for VM.
2025-10-22 07:17:06 (10316): Adding storage controller(s) to VM.
2025-10-22 07:17:07 (10316): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 07:17:07 (10316): Adding VirtualBox Guest Additions to VM.
2025-10-22 07:17:07 (10316): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 07:17:08 (10316): forwarding host port 3319 to guest port 80
2025-10-22 07:17:08 (10316): Enabling remote desktop for VM.
2025-10-22 07:17:08 (10316): Required extension pack not installed, remote desktop not enabled.
2025-10-22 07:17:08 (10316): Enabling shared directory for VM.
2025-10-22 07:17:09 (10316): Starting VM using VBoxManage interface. (boinc_b806adaac68161ef, slot#5)
2025-10-22 07:17:18 (10316): Successfully started VM. (PID = '3284')
2025-10-22 07:17:18 (10316): Reporting VM Process ID to BOINC.
2025-10-22 07:17:18 (10316): Guest Log: BIOS: VirtualBox 6.0.14
2025-10-22 07:17:18 (10316): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 07:17:18 (10316): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 07:17:18 (10316): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 07:17:18 (10316): Detected: Web Application Enabled (http://localhost:3319)
2025-10-22 07:17:18 (10316): Preference change detected
2025-10-22 07:17:18 (10316): Setting CPU throttle for VM. (100%)
2025-10-22 07:17:19 (10316): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 07:17:20 (10316): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 07:17:20 (10316): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 07:17:24 (10316): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 07:17:24 (10316): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 07:17:24 (10316): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 07:17:37 (10316): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 07:17:37 (10316): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-22 07:17:56 (10316): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 07:17:56 (10316): Guest Log: 00:00:00.000376 main     Log opened 2025-10-22T07:17:54.092875000Z
2025-10-22 07:17:56 (10316): Guest Log: 00:00:00.000724 main     OS Product: Linux
2025-10-22 07:17:56 (10316): Guest Log: 00:00:00.000821 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 07:17:56 (10316): Guest Log: 00:00:00.000902 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 07:17:56 (10316): Guest Log: 00:00:00.001029 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 07:17:56 (10316): Guest Log: 00:00:00.001032 main     Process ID: 1342
2025-10-22 07:17:56 (10316): Guest Log: 00:00:00.001034 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 07:17:56 (10316): Guest Log: 00:00:00.003335 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 07:17:56 (10316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 07:17:56 (10316): Guest Log: [INFO] Mounting shared directory
2025-10-22 07:17:56 (10316): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 07:18:02 (10316): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 07:18:02 (10316): Guest Log: [INFO] Detected branch: prod
2025-10-22 07:18:02 (10316): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 07:18:02 (10316): Guest Log: Copying input files
2025-10-22 07:18:06 (10316): Guest Log: 00:00:10.007043 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 212 022 661 000ns (GuestNow=1 761 142 686 121 565 000 ns GuestLast=1 761 117 474 098 904 000 ns fSetTimeLastLoop=true )
2025-10-22 07:18:09 (10316): Guest Log: Copied input files into RunAtlas.
2025-10-22 07:18:09 (10316): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 07:18:09 (10316): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 07:18:09 (10316): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 07:18:09 (10316): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 07:18:19 (10316): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 07:18:19 (10316): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 07:18:19 (10316): Guest Log: 2.6.3.0 1621 0 30152 151998 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 07:18:22 (10316): Guest Log: copied the webapp to /var/www
2025-10-22 07:18:22 (10316): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-22 07:18:22 (10316): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-22 07:18:22 (10316): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 07:18:22 (10316): Guest Log:  *** Starting ATLAS job. (PandaID=6853387852 taskID=46771637) ***
2025-10-22 08:57:26 (10316): Status Report: Elapsed Time: '6000.000000'
2025-10-22 08:57:26 (10316): Status Report: CPU Time: '28516.984375'
2025-10-22 10:37:32 (10316): Status Report: Elapsed Time: '12000.000000'
2025-10-22 10:37:32 (10316): Status Report: CPU Time: '63955.671875'
2025-10-22 12:17:49 (10316): Status Report: Elapsed Time: '18000.000000'
2025-10-22 12:17:49 (10316): Status Report: CPU Time: '99796.781250'
2025-10-22 13:58:20 (10316): Status Report: Elapsed Time: '24000.000000'
2025-10-22 13:58:20 (10316): Status Report: CPU Time: '135727.000000'
2025-10-22 15:39:17 (10316): Status Report: Elapsed Time: '30000.000000'
2025-10-22 15:39:17 (10316): Status Report: CPU Time: '171821.765625'
2025-10-22 16:08:21 (10316): Guest Log:  *** Job finished ***
2025-10-22 16:08:21 (10316): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:08,044 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:08,044 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:12,483 | INFO     | [monitor] cgroup control has ended
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:13,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908158564160)>', '<ExcThread(monitor, started 139907729180416)>']
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:14,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:14,117 | INFO     | [monitor] control thread has ended
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,617 | INFO     | all workflow threads have been joined
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,617 | INFO     | end of generic workflow (traces error code: 0)
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,617 | INFO     | traces error code: 0
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,845 [wrapper] ==== pilot stdout END ====
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,858 [wrapper] ==== wrapper stdout RESUME ====
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,871 [wrapper] pilotpid: 6047
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,885 [wrapper] Pilot exit status: 0
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:18,972 [wrapper] pandaids: 6853387852
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:19,077 [wrapper] cleanup supervisor_pilot  8910 6048
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:19,099 [wrapper] Test setup, not cleaning
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:19,112 [wrapper] apfmon messages muted
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:19,127 [wrapper] ==== wrapper stdout END ====
2025-10-22 16:08:21 (10316): Guest Log: 2025-10-22 23:08:19,140 [wrapper] ==== wrapper stderr END ====
2025-10-22 16:08:21 (10316): Guest Log:  *** Error codes and diagnostics ***
2025-10-22 16:08:21 (10316): Guest Log:     "exeErrorCode": 0,
2025-10-22 16:08:21 (10316): Guest Log:     "exeErrorDiag": "",
2025-10-22 16:08:21 (10316): Guest Log:     "pilotErrorCode": 0,
2025-10-22 16:08:21 (10316): Guest Log:     "pilotErrorDiag": "",
2025-10-22 16:08:21 (10316): Guest Log:  *** Listing of results directory ***
2025-10-22 16:08:21 (10316): Guest Log: total 217448
2025-10-22 16:08:21 (10316): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 22 09:15 pilot3.tar.gz
2025-10-22 16:08:21 (10316): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 22 09:21 queuedata.json
2025-10-22 16:08:21 (10316): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 22 09:23 runpilot2-wrapper.sh
2025-10-22 16:08:21 (10316): Guest Log: -rwxr-xr-x. 1 atlas atlas      9204 Oct 22 14:18 init_data.xml
2025-10-22 16:08:21 (10316): Guest Log: -rwxr-xr-x. 1 atlas atlas    569678 Oct 22 14:18 input.tar.gz
2025-10-22 16:08:21 (10316): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 22 14:18 start_atlas.sh
2025-10-22 16:08:21 (10316): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 22 14:18 EVNT.46771634._003389.pool.root.1 -> /data/./ATLAS.root_0
2025-10-22 16:08:21 (10316): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 22 14:18 pandaJob.out
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas    977650 Oct 22 14:19 agis_schedconf.cvmfs.json
2025-10-22 16:08:21 (10316): Guest Log: drwx------. 5 atlas atlas      4096 Oct 22 14:19 pilot3
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas 209435081 Oct 22 23:05 HITS.46771637._084424.pool.root.1
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 22 23:06 memory_monitor_summary.json
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 22 23:07 agis_ddmendpoints.agis.ALL.json
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas    646248 Oct 22 23:07 log.46771637._084424.job.log.tgz.1
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas      7834 Oct 22 23:07 heartbeat.json
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas        95 Oct 22 23:08 pilot_heartbeat.json
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 22 23:08 pilotlog.txt
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas   4050209 Oct 22 23:08 log.46771637._084424.job.log.1
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas       357 Oct 22 23:08 output.list
2025-10-22 16:08:21 (10316): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 22 23:08 runtime_log
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas   4720640 Oct 22 23:08 result.tar.gz
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas       669 Oct 22 23:08 WheNDmvEkV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkH5NDmwYMmFm.diag
2025-10-22 16:08:21 (10316): Guest Log: -rw-r--r--. 1 atlas atlas      8667 Oct 22 23:08 runtime_log.err
2025-10-22 16:08:21 (10316): Guest Log: Looking for outputfile HITS.46771637._084424.pool.root.1
2025-10-22 16:08:21 (10316): Guest Log: HITS file was successfully produced
2025-10-22 16:08:21 (10316): Guest Log: -rw-------. 1 atlas atlas 209435081 Oct 22 23:05 /home/atlas/RunAtlas/HITS.46771637._084424.pool.root.1
2025-10-22 16:08:23 (10316): Guest Log: Successfully finished the ATLAS job!
2025-10-22 16:08:23 (10316): Guest Log: Copying the results back to the shared directory!
2025-10-22 16:08:23 (10316): Guest Log:  *** Contents of shared directory: ***
2025-10-22 16:08:24 (10316): Guest Log: total 432948
2025-10-22 16:08:24 (10316): Guest Log: -rwxrwxrwx. 1 root root 228574075 Oct 22 14:17 ATLAS.root_0
2025-10-22 16:08:24 (10316): Guest Log: -rwxrwxrwx. 1 root root 209435081 Oct 22 23:08 HITS.pool.root.1
2025-10-22 16:08:24 (10316): Guest Log: -rwxrwxrwx. 1 root root      9204 Oct 22 14:17 init_data.xml
2025-10-22 16:08:24 (10316): Guest Log: -rwxrwxrwx. 1 root root    569678 Oct 22 14:16 input.tar.gz
2025-10-22 16:08:24 (10316): Guest Log: -rwxrwxrwx. 1 root root   4720640 Oct 22 23:08 result.tar.gz
2025-10-22 16:08:24 (10316): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 22 14:16 start_atlas.sh
2025-10-22 16:08:24 (10316): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-22 16:08:24 (10316): VM Completion File Detected.
2025-10-22 16:08:24 (10316): Powering off VM.
2025-10-22 16:08:26 (10316): Successfully stopped VM.
2025-10-22 16:08:26 (10316): Deregistering VM. (boinc_b806adaac68161ef, slot#5)
2025-10-22 16:08:26 (10316): Removing network bandwidth throttle group from VM.
2025-10-22 16:08:27 (10316): Removing VM from VirtualBox.
2025-10-22 16:08:32 (10316): called boinc_finish(0)

</stderr_txt>
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