Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 09:44:54 (14872): vboxwrapper version 26210
2025-10-22 09:44:54 (14872): BOINC client version: 8.2.4
2025-10-22 09:44:54 (14872): Detected: VirtualBox VboxManage Interface (Version: 7.2.0)
2025-10-22 09:44:55 (14872): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 09:44:55 (14872): Create VM. (boinc_788e2abe423e931b, slot#0)
2025-10-22 09:44:55 (14872): Setting Memory Size for VM. (4400MB)
2025-10-22 09:44:56 (14872): Setting CPU Count for VM. (4)
2025-10-22 09:44:56 (14872): Setting Chipset Options for VM.
2025-10-22 09:44:56 (14872): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 09:44:56 (14872): Setting Boot Options for VM.
2025-10-22 09:44:57 (14872): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 09:44:57 (14872): Enabling VM Network Access.
2025-10-22 09:44:57 (14872): Disabling USB Support for VM.
2025-10-22 09:44:58 (14872): Disabling COM Port Support for VM.
2025-10-22 09:44:58 (14872): Disabling LPT Port Support for VM.
2025-10-22 09:44:58 (14872): Disabling Audio Support for VM.
2025-10-22 09:44:58 (14872): Disabling Clipboard Support for VM.
2025-10-22 09:44:59 (14872): Disabling Drag and Drop Support for VM.
2025-10-22 09:44:59 (14872): Adding storage controller(s) to VM.
2025-10-22 09:44:59 (14872): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 09:45:00 (14872): Adding VirtualBox Guest Additions to VM.
2025-10-22 09:45:00 (14872): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 09:45:00 (14872): forwarding host port 58962 to guest port 80
2025-10-22 09:45:00 (14872): Enabling remote desktop for VM.
2025-10-22 09:45:01 (14872): Required extension pack not installed, remote desktop not enabled.
2025-10-22 09:45:01 (14872): Enabling shared directory for VM.
2025-10-22 09:45:01 (14872): Starting VM using VBoxManage interface. (boinc_788e2abe423e931b, slot#0)
2025-10-22 09:45:06 (14872): Successfully started VM. (PID = '12048')
2025-10-22 09:45:06 (14872): Reporting VM Process ID to BOINC.
2025-10-22 09:45:06 (14872): Guest Log: BIOS: VirtualBox 7.2.0
2025-10-22 09:45:06 (14872): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 09:45:06 (14872): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-22 09:45:06 (14872): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 09:45:06 (14872): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 09:45:06 (14872): Detected: Web Application Enabled (http://localhost:58962)
2025-10-22 09:45:06 (14872): Preference change detected
2025-10-22 09:45:06 (14872): Setting CPU throttle for VM. (80%)
2025-10-22 09:45:06 (14872): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 09:45:08 (14872): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 09:45:08 (14872): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 09:45:11 (14872): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 09:45:11 (14872): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 09:45:11 (14872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 09:45:21 (14872): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 09:45:21 (14872): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-22 09:45:31 (14872): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 09:45:31 (14872): Guest Log: 00:00:00.000170 main     Log opened 2025-10-22T09:45:29.251229000Z
2025-10-22 09:45:31 (14872): Guest Log: 00:00:00.000289 main     OS Product: Linux
2025-10-22 09:45:31 (14872): Guest Log: 00:00:00.000334 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 09:45:31 (14872): Guest Log: 00:00:00.000366 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 09:45:31 (14872): Guest Log: 00:00:00.000402 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 09:45:31 (14872): Guest Log: 00:00:00.000403 main     Process ID: 1303
2025-10-22 09:45:31 (14872): Guest Log: 00:00:00.000403 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 09:45:31 (14872): Guest Log: 00:00:00.001849 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 09:45:31 (14872): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 09:45:31 (14872): Guest Log: [INFO] Mounting shared directory
2025-10-22 09:45:31 (14872): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 09:45:34 (14872): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 09:45:34 (14872): Guest Log: [INFO] Detected branch: prod
2025-10-22 09:45:35 (14872): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 09:45:35 (14872): Guest Log: Copying input files
2025-10-22 09:45:37 (14872): Guest Log: Copied input files into RunAtlas.
2025-10-22 09:45:37 (14872): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 09:45:37 (14872): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 09:45:37 (14872): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 09:45:37 (14872): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 09:45:41 (14872): Guest Log: 00:00:10.020410 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 509 827 000ns (GuestNow=1 761 140 740 764 621 000 ns GuestLast=1 761 126 329 254 794 000 ns fSetTimeLastLoop=true )
2025-10-22 09:45:45 (14872): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 09:45:46 (14872): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 09:45:46 (14872): Guest Log: 2.6.3.0 1582 0 32188 151996 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 09:45:47 (14872): Guest Log: copied the webapp to /var/www
2025-10-22 09:45:47 (14872): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-22 09:45:47 (14872): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-22 09:45:47 (14872): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 09:45:47 (14872): Guest Log:  *** Starting ATLAS job. (PandaID=6853330344 taskID=46771637) ***
2025-10-22 11:25:08 (14872): Status Report: Elapsed Time: '6000.000000'
2025-10-22 11:25:08 (14872): Status Report: CPU Time: '11477.546875'
2025-10-22 13:05:10 (14872): Status Report: Elapsed Time: '12000.000000'
2025-10-22 13:05:10 (14872): Status Report: CPU Time: '24118.140625'
2025-10-22 14:45:12 (14872): Status Report: Elapsed Time: '18000.000000'
2025-10-22 14:45:12 (14872): Status Report: CPU Time: '36257.968750'
2025-10-22 15:49:52 (14872): Guest Log:  *** Job finished ***
2025-10-22 15:49:52 (14872): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:11,208 | INFO     | [job] queue monitor thread has finished
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:11,722 | INFO     | [data] queue_monitor thread has finished
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:42,540 | INFO     | [monitor] cgroup control has ended
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:44,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466589988672)>', '<ExcThread(monitor, started 140466158823168)>']
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:45,419 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:45,419 | INFO     | [monitor] control thread has ended
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,625 | INFO     | all workflow threads have been joined
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,625 | INFO     | end of generic workflow (traces error code: 0)
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,625 | INFO     | traces error code: 0
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,626 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,753 [wrapper] ==== pilot stdout END ====
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,783 [wrapper] ==== wrapper stdout RESUME ====
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,812 [wrapper] pilotpid: 5980
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,847 [wrapper] Pilot exit status: 0
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:49,997 [wrapper] pandaids: 6853330344
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:50,165 [wrapper] cleanup supervisor_pilot 26087 5981
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:50,196 [wrapper] Test setup, not cleaning
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:50,227 [wrapper] apfmon messages muted
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:50,251 [wrapper] ==== wrapper stdout END ====
2025-10-22 15:49:52 (14872): Guest Log: 2025-10-22 19:49:50,277 [wrapper] ==== wrapper stderr END ====
2025-10-22 15:49:52 (14872): Guest Log:  *** Error codes and diagnostics ***
2025-10-22 15:49:52 (14872): Guest Log:     "exeErrorCode": 0,
2025-10-22 15:49:52 (14872): Guest Log:     "exeErrorDiag": "",
2025-10-22 15:49:52 (14872): Guest Log:     "pilotErrorCode": 0,
2025-10-22 15:49:52 (14872): Guest Log:     "pilotErrorDiag": "",
2025-10-22 15:49:52 (14872): Guest Log:  *** Listing of results directory ***
2025-10-22 15:49:52 (14872): Guest Log: total 206996
2025-10-22 15:49:52 (14872): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 22 08:17 pilot3.tar.gz
2025-10-22 15:49:52 (14872): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 22 08:46 queuedata.json
2025-10-22 15:49:52 (14872): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 22 08:50 runpilot2-wrapper.sh
2025-10-22 15:49:52 (14872): Guest Log: -rwxr-xr-x. 1 atlas atlas      9005 Oct 22 13:45 init_data.xml
2025-10-22 15:49:52 (14872): Guest Log: -rwxr-xr-x. 1 atlas atlas    569678 Oct 22 13:45 input.tar.gz
2025-10-22 15:49:52 (14872): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 22 13:45 start_atlas.sh
2025-10-22 15:49:52 (14872): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 22 13:45 EVNT.46771634._003372.pool.root.1 -> /data/./ATLAS.root_0
2025-10-22 15:49:52 (14872): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 22 13:45 pandaJob.out
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas    977605 Oct 22 13:47 agis_schedconf.cvmfs.json
2025-10-22 15:49:52 (14872): Guest Log: drwx------. 5 atlas atlas      4096 Oct 22 13:47 pilot3
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas 201548754 Oct 22 19:47 HITS.46771637._084085.pool.root.1
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas      1025 Oct 22 19:48 memory_monitor_summary.json
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 22 19:48 agis_ddmendpoints.agis.ALL.json
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas    491815 Oct 22 19:48 log.46771637._084085.job.log.tgz.1
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas        95 Oct 22 19:48 pilot_heartbeat.json
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas      7825 Oct 22 19:49 heartbeat.json
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas      4612 Oct 22 19:49 pilotlog.txt
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas   2796001 Oct 22 19:49 log.46771637._084085.job.log.1
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas       357 Oct 22 19:49 output.list
2025-10-22 15:49:52 (14872): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 22 19:49 runtime_log
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas   3307520 Oct 22 19:49 result.tar.gz
2025-10-22 15:49:52 (14872): Guest Log: -rw-r--r--. 1 atlas atlas      8604 Oct 22 19:49 runtime_log.err
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas       647 Oct 22 19:49 F6RMDm9ijV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmYIhMDmvzalWm.diag
2025-10-22 15:49:52 (14872): Guest Log: Looking for outputfile HITS.46771637._084085.pool.root.1
2025-10-22 15:49:52 (14872): Guest Log: HITS file was successfully produced
2025-10-22 15:49:52 (14872): Guest Log: -rw-------. 1 atlas atlas 201548754 Oct 22 19:47 /home/atlas/RunAtlas/HITS.46771637._084085.pool.root.1
2025-10-22 15:49:53 (14872): Guest Log: Successfully finished the ATLAS job!
2025-10-22 15:49:53 (14872): Guest Log: Copying the results back to the shared directory!
2025-10-22 15:49:54 (14872): Guest Log:  *** Contents of shared directory: ***
2025-10-22 15:49:54 (14872): Guest Log: total 421720
2025-10-22 15:49:54 (14872): Guest Log: -rwxrwxrwx. 1 root root 226376798 Oct 22 13:44 ATLAS.root_0
2025-10-22 15:49:54 (14872): Guest Log: -rwxrwxrwx. 1 root root 201548754 Oct 22 19:49 HITS.pool.root.1
2025-10-22 15:49:54 (14872): Guest Log: -rwxrwxrwx. 1 root root      9005 Oct 22 13:44 init_data.xml
2025-10-22 15:49:54 (14872): Guest Log: -rwxrwxrwx. 1 root root    569678 Oct 22 13:44 input.tar.gz
2025-10-22 15:49:54 (14872): Guest Log: -rwxrwxrwx. 1 root root   3307520 Oct 22 19:49 result.tar.gz
2025-10-22 15:49:54 (14872): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 22 13:44 start_atlas.sh
2025-10-22 15:49:54 (14872): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-22 15:49:54 (14872): VM Completion File Detected.
2025-10-22 15:49:54 (14872): Powering off VM.
2025-10-22 15:49:54 (14872): Successfully stopped VM.
2025-10-22 15:49:54 (14872): Deregistering VM. (boinc_788e2abe423e931b, slot#0)
2025-10-22 15:49:54 (14872): Removing network bandwidth throttle group from VM.
2025-10-22 15:49:55 (14872): Removing VM from VirtualBox.
2025-10-22 15:50:00 (14872): called boinc_finish(0)

</stderr_txt>
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