Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:10:41 (6550): wrapper (7.7.26015): starting
15:10:41 (6550): wrapper: running run_atlas (--nthreads 12)
[2025-10-22 15:10:41] Arguments: --nthreads 12
[2025-10-22 15:10:41] Threads: 12
[2025-10-22 15:10:41] Checking for CVMFS
[2025-10-22 15:10:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 15:10:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 15:10:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 15:10:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 15:10:46] 2.13.2.0 13980 550 66368 151998 2 188 2948341 102400000 868 130560 0 1273186 99.996 21759 36 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-22 15:10:46] CVMFS is ok
[2025-10-22 15:10:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 15:10:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 15:10:46] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-22 15:10:46] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-22 15:10:46] Further information can be found at the LHC@home message board.
[2025-10-22 15:10:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 15:10:46] Checking for apptainer binary...
[2025-10-22 15:10:46] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin)
[2025-10-22 15:10:46] apptainer is not installed, using version from CVMFS
[2025-10-22 15:10:46] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 15:10:46] crocidura-russula
[2025-10-22 15:10:46] apptainer works
[2025-10-22 15:10:46] Set ATHENA_PROC_NUMBER=12
[2025-10-22 15:10:46] Set ATHENA_CORE_NUMBER=12
[2025-10-22 15:10:46] Starting ATLAS job with PandaID=6853307538
[2025-10-22 15:10:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/virtma/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 16:01:16]  *** The last 200 lines of the pilot log: ***
[2025-10-22 16:01:16] 2025-10-22 16:00:18,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:18,723 | INFO     | time since job start (2960s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:20,576 | INFO     | monitor loop #227: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:20,576 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:20,728 | INFO     | time since job start (2962s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:22,734 | INFO     | time since job start (2964s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:23,079 | INFO     | monitor loop #228: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:23,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:24,740 | INFO     | time since job start (2966s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:25,583 | INFO     | monitor loop #229: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:25,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:26,748 | INFO     | time since job start (2968s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:28,084 | INFO     | monitor loop #230: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:28,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:28,752 | INFO     | time since job start (2970s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:30,587 | INFO     | monitor loop #231: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:30,587 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:30,756 | INFO     | time since job start (2972s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:32,761 | INFO     | time since job start (2974s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:33,090 | INFO     | monitor loop #232: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:33,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:34,764 | INFO     | time since job start (2976s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:35,594 | INFO     | monitor loop #233: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:35,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:35,901 | INFO     | PID=10485 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-22 16:01:16] 2025-10-22 16:00:35,901 | INFO     | .. there are 2 such processes running
[2025-10-22 16:01:16] 2025-10-22 16:00:36,902 | INFO     | time since job start (2978s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:38,097 | INFO     | monitor loop #234: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:38,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:38,904 | INFO     | time since job start (2980s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:40,600 | INFO     | monitor loop #235: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:40,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:40,908 | INFO     | time since job start (2982s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:42,912 | INFO     | time since job start (2984s) is within the limit (172800.0s)
[2025-10-22 16:01:16] 2025-10-22 16:00:43,103 | INFO     | monitor loop #236: job 0:6853307538 is in state 'finished'
[2025-10-22 16:01:16] 2025-10-22 16:00:43,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 16:01:16] 2025-10-22 16:00:44,313 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-22 16:01:16] 2025-10-22 16:00:44,318 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3726.599270833334
[2025-10-22 16:01:16] 2025-10-22 16:00:44,322 | INFO     | using path: /virtma/boinc/slots/0/PanDA_Pilot-6853307538/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 16:01:16] 2025-10-22 16:00:44,323 | INFO     | extracted standard info from prmon json
[2025-10-22 16:01:16] 2025-10-22 16:00:44,323 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 16:01:16] 2025-10-22 16:00:44,323 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 16:01:16] 2025-10-22 16:00:44,323 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 16:01:16] 2025-10-22 16:00:44,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | fitting pss+swap vs Time
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | sum of square deviations: 22960430.5
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | sum of deviations: 20469841614.0
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | mean x: 1761147431.5
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | mean y: 2330605.8095238097
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | -- intersect: -1570107993837.276
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | intersect: -1570107993837.276
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | chi2: 2.83320764960886
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | -- intersect: -1570107993837.276
[2025-10-22 16:01:16] 2025-10-22 16:00:44,324 | INFO     | current memory leak: 891.53 B/s (using 42 data points, chi2=2.83)
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | could have reported an average CPU frequency of 3398 MHz (5 samples)
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | ..............................
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | . Timing measurements:
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | . get job = 0 s
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | . initial setup = 8 s
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | . payload setup = 2 s
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | . stage-in = 0 s
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | . payload execution = 2933 s
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | . stage-out = 0 s
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | . log creation = 0 s
[2025-10-22 16:01:16] 2025-10-22 16:00:44,325 | INFO     | ..............................
[2025-10-22 16:01:16] 2025-10-22 16:00:44,364 | INFO     | 
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | job summary report
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | --------------------------------------------------
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | PanDA job id: 6853307538
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | task id: 46771637
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | errors: (none)
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | pilot state: finished 
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | transexitcode: 0
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | exeerrorcode: 0
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | exeerrordiag: 
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | exitcode: 0
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | exitmsg: OK
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | cpuconsumptiontime: 22244 s
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | nevents: 400
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | neventsw: 0
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | pid: 17344
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | pgrp: 17344
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | corecount: 12
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | event service: False
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | sizes: {0: 2348758, 1: 2348957, 3: 2349219, 11: 2349247, 2940: 2374673, 2942: 2383669, 2944: 2383853, 2973: 2384079}
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | --------------------------------------------------
[2025-10-22 16:01:16] 2025-10-22 16:00:44,365 | INFO     | 
[2025-10-22 16:01:16] 2025-10-22 16:00:44,366 | INFO     | executing command: ls -lF /virtma/boinc/slots/0
[2025-10-22 16:01:16] 2025-10-22 16:00:44,378 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,378 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,378 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,378 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,378 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,378 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,378 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,378 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | job 6853307538 has completed (purged errors)
[2025-10-22 16:01:16] 2025-10-22 16:00:44,379 | INFO     | overall cleanup function is called
[2025-10-22 16:01:16] 2025-10-22 16:00:45,386 | INFO     | --- collectZombieJob: --- 10, [17344]
[2025-10-22 16:01:16] 2025-10-22 16:00:45,386 | INFO     | zombie collector waiting for pid 17344
[2025-10-22 16:01:16] 2025-10-22 16:00:45,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 16:01:16] 2025-10-22 16:00:45,386 | INFO     | collected zombie processes
[2025-10-22 16:01:16] 2025-10-22 16:00:45,386 | INFO     | will attempt to kill all subprocesses of pid=17344
[2025-10-22 16:01:16] 2025-10-22 16:00:45,469 | INFO     | process IDs to be killed: [17344] (in reverse order)
[2025-10-22 16:01:16] 2025-10-22 16:00:45,501 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 16:01:16] 2025-10-22 16:00:45,502 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 16:01:16] 2025-10-22 16:00:45,505 | INFO     | did not find any defunct processes belonging to 17344
[2025-10-22 16:01:16] 2025-10-22 16:00:45,507 | INFO     | did not find any defunct processes belonging to 17344
[2025-10-22 16:01:16] 2025-10-22 16:00:45,507 | INFO     | ready for new job
[2025-10-22 16:01:16] 2025-10-22 16:00:45,507 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 16:01:16] 2025-10-22 16:00:45,508 | INFO     | ***************************************
[2025-10-22 16:01:16] 2025-10-22 16:00:45,508 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 16:01:16] 2025-10-22 16:00:45,508 | INFO     | ***************************************
[2025-10-22 16:01:16] 2025-10-22 16:00:45,508 | INFO     | 
[2025-10-22 16:01:16] 2025-10-22 16:00:45,509 | INFO     | architecture information:
[2025-10-22 16:01:16] 2025-10-22 16:00:45,509 | INFO     | executing command: cat /etc/os-release
[2025-10-22 16:01:16] 2025-10-22 16:00:45,517 | INFO     | cat /etc/os-release:
[2025-10-22 16:01:16] NAME="CentOS Linux"
[2025-10-22 16:01:16] VERSION="7 (Core)"
[2025-10-22 16:01:16] ID="centos"
[2025-10-22 16:01:16] ID_LIKE="rhel fedora"
[2025-10-22 16:01:16] VERSION_ID="7"
[2025-10-22 16:01:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 16:01:16] ANSI_COLOR="0;31"
[2025-10-22 16:01:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 16:01:16] HOME_URL="https://www.centos.org/"
[2025-10-22 16:01:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 16:01:16] 
[2025-10-22 16:01:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 16:01:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 16:01:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 16:01:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 16:01:16] 
[2025-10-22 16:01:16] 2025-10-22 16:00:45,517 | INFO     | ***************************************
[2025-10-22 16:01:16] 2025-10-22 16:00:46,020 | INFO     | executing command: df -mP /virtma/boinc/slots/0
[2025-10-22 16:01:16] 2025-10-22 16:00:46,036 | INFO     | sufficient remaining disk space (956497395712 B)
[2025-10-22 16:01:16] 2025-10-22 16:00:46,037 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 16:01:16] 2025-10-22 16:00:46,037 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 16:01:16] 2025-10-22 16:00:46,037 | INFO     | update_server=False
[2025-10-22 16:01:16] 2025-10-22 16:00:46,037 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 16:01:16] 2025-10-22 16:00:46,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 16:01:16] 2025-10-22 16:00:46,038 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 16:01:16] 2025-10-22 16:00:46,167 | INFO     | all data control threads have been joined
[2025-10-22 16:01:16] 2025-10-22 16:00:46,612 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 16:01:16] 2025-10-22 16:00:46,612 | INFO     | aborting loop
[2025-10-22 16:01:16] 2025-10-22 16:00:46,853 | INFO     | all job control threads have been joined
[2025-10-22 16:01:16] 2025-10-22 16:00:46,990 | INFO     | all payload control threads have been joined
[2025-10-22 16:01:16] 2025-10-22 16:00:47,040 | INFO     | [job] queue monitor thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,040 | INFO     | [job] retrieve thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,064 | INFO     | [data] copytool_in thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,172 | INFO     | [data] control thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,507 | INFO     | [payload] validate_post thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,618 | INFO     | [job] job monitor thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,673 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 16:01:16] 2025-10-22 16:00:47,708 | INFO     | [job] validate thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,828 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,854 | INFO     | [job] control thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,956 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,980 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:47,996 | INFO     | [payload] control thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:48,044 | INFO     | [data] copytool_out thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:48,400 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:48,590 | INFO     | [payload] failed_post thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:00:51,679 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 16:01:16] 2025-10-22 16:01:02,540 | INFO     | [monitor] cgroup control has ended
[2025-10-22 16:01:16] 2025-10-22 16:01:03,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140690386483008)>', '<ExcThread(monitor, started 140689765558016)>']
[2025-10-22 16:01:16] 2025-10-22 16:01:08,339 | INFO     | all workflow threads have been joined
[2025-10-22 16:01:16] 2025-10-22 16:01:08,340 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 16:01:16] 2025-10-22 16:01:08,340 | INFO     | traces error code: 0
[2025-10-22 16:01:16] 2025-10-22 16:01:08,340 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 16:01:16] 2025-10-22 16:01:16,113 | INFO     | PID=10485 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-22 16:01:16] 2025-10-22 16:01:16,113 | INFO     | .. there are 2 such processes running
[2025-10-22 16:01:16] 2025-10-22 16:01:16,113 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 16:01:16] 2025-10-22 16:01:16,113 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 16:01:16] 2025-10-22 16:01:16,113 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 16:01:16] 2025-10-22 16:01:16,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 16:01:16] 2025-10-22 16:01:16,113 | INFO     | [monitor] control thread has ended
[2025-10-22 16:01:16] 2025-10-22 16:01:16,179 [wrapper] ==== pilot stdout END ====
[2025-10-22 16:01:16] 2025-10-22 16:01:16,181 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 16:01:16] 2025-10-22 16:01:16,182 [wrapper] pilotpid: 10485
[2025-10-22 16:01:16] 2025-10-22 16:01:16,184 [wrapper] Pilot exit status: 0
[2025-10-22 16:01:16] 2025-10-22 16:01:16,189 [wrapper] pandaids: 6853307538
[2025-10-22 16:01:16] 2025-10-22 16:01:16,209 [wrapper] cleanup supervisor_pilot  1853 10486
[2025-10-22 16:01:16] 2025-10-22 16:01:16,210 [wrapper] Test setup, not cleaning
[2025-10-22 16:01:16] 2025-10-22 16:01:16,211 [wrapper] apfmon messages muted
[2025-10-22 16:01:16] 2025-10-22 16:01:16,213 [wrapper] ==== wrapper stdout END ====
[2025-10-22 16:01:16] 2025-10-22 16:01:16,214 [wrapper] ==== wrapper stderr END ====
[2025-10-22 16:01:16]  *** Error codes and diagnostics ***
[2025-10-22 16:01:16]     "exeErrorCode": 0,
[2025-10-22 16:01:16]     "exeErrorDiag": "",
[2025-10-22 16:01:16]     "pilotErrorCode": 0,
[2025-10-22 16:01:16]     "pilotErrorDiag": "",
[2025-10-22 16:01:16]  *** Listing of results directory ***
[2025-10-22 16:01:16] total 427996
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc    557409 Oct 22 05:29 pilot3.tar.gz
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc      5112 Oct 22 06:33 queuedata.json
[2025-10-22 16:01:16] -rwx------ 1 boinc boinc     36292 Oct 22 06:35 runpilot2-wrapper.sh
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc       100 Oct 22 15:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 16:01:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 15:10 run_atlas
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc       105 Oct 22 15:10 job.xml
[2025-10-22 16:01:16] -rw-r--r-- 2 boinc boinc     15120 Oct 22 15:10 start_atlas.sh
[2025-10-22 16:01:16] drwxrwx--x 2 boinc boinc        68 Oct 22 15:10 shared
[2025-10-22 16:01:16] -rw-r--r-- 2 boinc boinc    569672 Oct 22 15:10 input.tar.gz
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc      8776 Oct 22 15:10 init_data.xml
[2025-10-22 16:01:16] -rw-r--r-- 2 boinc boinc 228399654 Oct 22 15:10 EVNT.46771634._003288.pool.root.1
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc         0 Oct 22 15:10 boinc_setup_complete
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc         0 Oct 22 15:10 boinc_lockfile
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc      2559 Oct 22 15:10 pandaJob.out
[2025-10-22 16:01:16] -rw------- 1 boinc boinc    977650 Oct 22 15:10 agis_schedconf.cvmfs.json
[2025-10-22 16:01:16] -rw------- 1 boinc boinc   1560740 Oct 22 15:10 agis_ddmendpoints.agis.ALL.json
[2025-10-22 16:01:16] drwx------ 5 boinc boinc      4096 Oct 22 15:10 pilot3
[2025-10-22 16:01:16] -rw------- 1 boinc boinc 204333473 Oct 22 15:59 HITS.46771637._082319.pool.root.1
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc       529 Oct 22 15:59 boinc_task_state.xml
[2025-10-22 16:01:16] -rw------- 1 boinc boinc      1029 Oct 22 16:00 memory_monitor_summary.json
[2025-10-22 16:01:16] -rw------- 1 boinc boinc    360400 Oct 22 16:00 log.46771637._082319.job.log.tgz.1
[2025-10-22 16:01:16] -rw------- 1 boinc boinc        95 Oct 22 16:00 pilot_heartbeat.json
[2025-10-22 16:01:16] -rw------- 1 boinc boinc      7810 Oct 22 16:00 heartbeat.json
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc        27 Oct 22 16:01 wrapper_checkpoint.txt
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc      8192 Oct 22 16:01 boinc_mmap_file
[2025-10-22 16:01:16] -rw------- 1 boinc boinc       820 Oct 22 16:01 pilotlog.txt
[2025-10-22 16:01:16] -rw------- 1 boinc boinc    464348 Oct 22 16:01 log.46771637._082319.job.log.1
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc       620 Oct 22 16:01 runtime_log
[2025-10-22 16:01:16] -rw------- 1 boinc boinc    839680 Oct 22 16:01 result.tar.gz
[2025-10-22 16:01:16] -rw------- 1 boinc boinc       357 Oct 22 16:01 output.list
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc      8701 Oct 22 16:01 runtime_log.err
[2025-10-22 16:01:16] -rw------- 1 boinc boinc       654 Oct 22 16:01 ieNKDmuchV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAx4NDmCrQpXo.diag
[2025-10-22 16:01:16] -rw-r--r-- 1 boinc boinc     22584 Oct 22 16:01 stderr.txt
[2025-10-22 16:01:16] HITS file was successfully produced:
[2025-10-22 16:01:16] -rw------- 1 boinc boinc 204333473 Oct 22 15:59 shared/HITS.pool.root.1
[2025-10-22 16:01:16]  *** Contents of shared directory: ***
[2025-10-22 16:01:16] total 423992
[2025-10-22 16:01:16] -rw-r--r-- 2 boinc boinc     15120 Oct 22 15:10 start_atlas.sh
[2025-10-22 16:01:16] -rw-r--r-- 2 boinc boinc    569672 Oct 22 15:10 input.tar.gz
[2025-10-22 16:01:16] -rw-r--r-- 2 boinc boinc 228399654 Oct 22 15:10 ATLAS.root_0
[2025-10-22 16:01:16] -rw------- 1 boinc boinc 204333473 Oct 22 15:59 HITS.pool.root.1
[2025-10-22 16:01:16] -rw------- 1 boinc boinc    839680 Oct 22 16:01 result.tar.gz
16:01:17 (6550): run_atlas exited; CPU time 22282.524485
16:01:17 (6550): called boinc_finish(0)

</stderr_txt>
]]>

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