Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
08:21:10 (2105493): wrapper (7.7.26015): starting
08:21:10 (2105493): wrapper: running run_atlas (--nthreads 12)
[2025-10-22 08:21:10] Arguments: --nthreads 12
[2025-10-22 08:21:10] Threads: 12
[2025-10-22 08:21:10] Checking for CVMFS
[2025-10-22 08:21:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 08:21:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 08:21:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 08:21:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 08:21:10] 2.13.2.0 1493494 298 53740 151996 2 57 8949741 16777217 916 130560 0 1057960 99.997 10875 1243 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-22 08:21:10] CVMFS is ok
[2025-10-22 08:21:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 08:21:10] Checking for apptainer binary...
[2025-10-22 08:21:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 08:21:10] Running /usr/bin/apptainer --version
[2025-10-22 08:21:10] apptainer version 1.3.0-bp160.1.36
[2025-10-22 08:21:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 08:21:10] boinc-runner
[2025-10-22 08:21:10] apptainer works
[2025-10-22 08:21:10] Set ATHENA_PROC_NUMBER=12
[2025-10-22 08:21:10] Set ATHENA_CORE_NUMBER=12
[2025-10-22 08:21:10] Starting ATLAS job with PandaID=6853307346
[2025-10-22 08:21:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 08:54:32]  *** The last 200 lines of the pilot log: ***
[2025-10-22 08:54:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-22 08:54:32]  replicas=None
[2025-10-22 08:54:32]  scope=mc23_13p6TeV
[2025-10-22 08:54:32]  status=None
[2025-10-22 08:54:32]  status_code=0
[2025-10-22 08:54:32]  storage_token=
[2025-10-22 08:54:32]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6853307346/log.46771637._082127.job.log.tgz.1
[2025-10-22 08:54:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/87/log.46771637._082127.job.log.tgz.1
[2025-10-22 08:54:32]  workdir=None
[2025-10-22 08:54:32] ]
[2025-10-22 08:54:32] 2025-10-22 13:53:55,223 | INFO     | transferring file log.46771637._082127.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6853307346/log.46771637._082127.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-22 08:54:32] 2025-10-22 13:53:55,223 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6853307346/log.46771637._082127.job.log.tgz.1 /var/lib/boinc/slots/3/log.46771637._082127.job
[2025-10-22 08:54:32] 2025-10-22 13:53:55,231 | INFO     | adding to output.list: log.46771637._082127.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/13/87/log.46771637._082127.job.log.tg
[2025-10-22 08:54:32] 2025-10-22 13:53:55,232 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-22 08:54:32] 2025-10-22 13:53:55,232 | INFO     | summary of transferred files:
[2025-10-22 08:54:32] 2025-10-22 13:53:55,232 | INFO     |  -- lfn=log.46771637._082127.job.log.tgz.1, status_code=0, status=transferred
[2025-10-22 08:54:32] 2025-10-22 13:53:55,232 | INFO     | stage-out finished correctly
[2025-10-22 08:54:32] 2025-10-22 13:53:56,249 | WARNING  | process 2116245 can no longer be monitored (due to stat problems) - aborting
[2025-10-22 08:54:32] 2025-10-22 13:53:56,249 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6853307346/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 08:54:32] 2025-10-22 13:53:56,298 | INFO     | number of running child processes to parent process 2116245: 1
[2025-10-22 08:54:32] 2025-10-22 13:53:56,298 | INFO     | maximum number of monitored processes: 6
[2025-10-22 08:54:32] 2025-10-22 13:53:57,201 | INFO     | time since job start (1960s) is within the limit (172800.0s)
[2025-10-22 08:54:32] 2025-10-22 13:53:57,878 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-22 08:54:32] 2025-10-22 13:53:57,922 | INFO     | job 6853307346 has state=finished
[2025-10-22 08:54:32] 2025-10-22 13:53:57,923 | INFO     | preparing for final server update for job 6853307346 in state='finished'
[2025-10-22 08:54:32] 2025-10-22 13:53:58,185 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-22 08:54:32] 2025-10-22 13:53:58,185 | INFO     | this job has now completed (state=finished)
[2025-10-22 08:54:32] 2025-10-22 13:53:58,185 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-22 08:54:32] 2025-10-22 13:53:58,185 | INFO     | log transfer has been attempted: DONE
[2025-10-22 08:54:32] 2025-10-22 13:53:58,186 | INFO     | job 6853307346 has finished - writing final server update
[2025-10-22 08:54:32] 2025-10-22 13:53:58,186 | INFO     | total number of processed events: 400 (read)
[2025-10-22 08:54:32] 2025-10-22 13:53:58,186 | INFO     | executing command: lscpu
[2025-10-22 08:54:32] 2025-10-22 13:53:58,209 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-22 08:54:32] 2025-10-22 13:53:58,801 | INFO     | monitor loop #152: job 0:6853307346 is in state 'finished'
[2025-10-22 08:54:32] 2025-10-22 13:53:58,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 08:54:32] 2025-10-22 13:53:59,206 | INFO     | time since job start (1962s) is within the limit (172800.0s)
[2025-10-22 08:54:32] 2025-10-22 13:54:00,023 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-22 08:54:32] 2025-10-22 13:54:00,026 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4026.7813437499995
[2025-10-22 08:54:32] 2025-10-22 13:54:00,029 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6853307346/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 08:54:32] 2025-10-22 13:54:00,029 | INFO     | extracted standard info from prmon json
[2025-10-22 08:54:32] 2025-10-22 13:54:00,030 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 08:54:32] 2025-10-22 13:54:00,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 08:54:32] 2025-10-22 13:54:00,030 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 08:54:32] 2025-10-22 13:54:00,030 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 08:54:32] 2025-10-22 13:54:00,030 | INFO     | fitting pss+swap vs Time
[2025-10-22 08:54:32] 2025-10-22 13:54:00,030 | INFO     | sum of square deviations: 4837300.0
[2025-10-22 08:54:32] 2025-10-22 13:54:00,030 | INFO     | sum of deviations: -539070603.0000001
[2025-10-22 08:54:32] 2025-10-22 13:54:00,030 | INFO     | mean x: 1761140332.0
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | mean y: 2916952.28
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | -- intersect: 196265084016.3158
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | intersect: 196265084016.3158
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | chi2: 0.007167766517649075
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | -- intersect: 196265084016.3158
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | current memory leak: -111.44 B/s (using 25 data points, chi2=0.01)
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | could have reported an average CPU frequency of 3998 MHz (5 samples)
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | ..............................
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | . Timing measurements:
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | . get job = 0 s
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | . initial setup = 2 s
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | . payload setup = 2 s
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | . stage-in = 0 s
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | . payload execution = 1938 s
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | . stage-out = 0 s
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | . log creation = 0 s
[2025-10-22 08:54:32] 2025-10-22 13:54:00,031 | INFO     | ..............................
[2025-10-22 08:54:32] 2025-10-22 13:54:00,483 | INFO     | 
[2025-10-22 08:54:32] 2025-10-22 13:54:00,483 | INFO     | job summary report
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | --------------------------------------------------
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | PanDA job id: 6853307346
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | task id: 46771637
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | errors: (none)
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | pilot state: finished 
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | transexitcode: 0
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | exeerrorcode: 0
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | exeerrordiag: 
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | exitcode: 0
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | exitmsg: OK
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | cpuconsumptiontime: 20443 s
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | nevents: 400
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | neventsw: 0
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | pid: 2116245
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | pgrp: 2116245
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | corecount: 12
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | event service: False
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | sizes: {0: 2348931, 2: 2349193, 11: 2349221, 1944: 2374204, 1945: 2383202, 1948: 2383258, 1950: 2383612}
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | --------------------------------------------------
[2025-10-22 08:54:32] 2025-10-22 13:54:00,484 | INFO     | 
[2025-10-22 08:54:32] 2025-10-22 13:54:00,485 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,499 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | job 6853307346 has completed (purged errors)
[2025-10-22 08:54:32] 2025-10-22 13:54:00,500 | INFO     | overall cleanup function is called
[2025-10-22 08:54:32] 2025-10-22 13:54:01,506 | INFO     | --- collectZombieJob: --- 10, [2116245]
[2025-10-22 08:54:32] 2025-10-22 13:54:01,506 | INFO     | zombie collector waiting for pid 2116245
[2025-10-22 08:54:32] 2025-10-22 13:54:01,507 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 08:54:32] 2025-10-22 13:54:01,507 | INFO     | collected zombie processes
[2025-10-22 08:54:32] 2025-10-22 13:54:01,507 | INFO     | will attempt to kill all subprocesses of pid=2116245
[2025-10-22 08:54:32] 2025-10-22 13:54:01,568 | INFO     | process IDs to be killed: [2116245] (in reverse order)
[2025-10-22 08:54:32] 2025-10-22 13:54:01,603 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 08:54:32] 2025-10-22 13:54:01,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 08:54:32] 2025-10-22 13:54:01,606 | INFO     | did not find any defunct processes belonging to 2116245
[2025-10-22 08:54:32] 2025-10-22 13:54:01,608 | INFO     | did not find any defunct processes belonging to 2116245
[2025-10-22 08:54:32] 2025-10-22 13:54:01,608 | INFO     | ready for new job
[2025-10-22 08:54:32] 2025-10-22 13:54:01,608 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 08:54:32] 2025-10-22 13:54:01,609 | INFO     | ***************************************
[2025-10-22 08:54:32] 2025-10-22 13:54:01,610 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 08:54:32] 2025-10-22 13:54:01,610 | INFO     | ***************************************
[2025-10-22 08:54:32] 2025-10-22 13:54:01,610 | INFO     | 
[2025-10-22 08:54:32] 2025-10-22 13:54:01,611 | INFO     | architecture information:
[2025-10-22 08:54:32] 2025-10-22 13:54:01,611 | INFO     | executing command: cat /etc/os-release
[2025-10-22 08:54:32] 2025-10-22 13:54:01,618 | INFO     | cat /etc/os-release:
[2025-10-22 08:54:32] NAME="CentOS Linux"
[2025-10-22 08:54:32] VERSION="7 (Core)"
[2025-10-22 08:54:32] ID="centos"
[2025-10-22 08:54:32] ID_LIKE="rhel fedora"
[2025-10-22 08:54:32] VERSION_ID="7"
[2025-10-22 08:54:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 08:54:32] ANSI_COLOR="0;31"
[2025-10-22 08:54:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 08:54:32] HOME_URL="https://www.centos.org/"
[2025-10-22 08:54:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 08:54:32] 
[2025-10-22 08:54:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 08:54:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 08:54:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 08:54:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 08:54:32] 
[2025-10-22 08:54:32] 2025-10-22 13:54:01,618 | INFO     | ***************************************
[2025-10-22 08:54:32] 2025-10-22 13:54:02,120 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-22 08:54:32] 2025-10-22 13:54:02,131 | INFO     | sufficient remaining disk space (3863798087680 B)
[2025-10-22 08:54:32] 2025-10-22 13:54:02,131 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 08:54:32] 2025-10-22 13:54:02,131 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 08:54:32] 2025-10-22 13:54:02,131 | INFO     | update_server=False
[2025-10-22 08:54:32] 2025-10-22 13:54:02,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 08:54:32] 2025-10-22 13:54:02,161 | INFO     | all job control threads have been joined
[2025-10-22 08:54:32] 2025-10-22 13:54:02,309 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 08:54:32] 2025-10-22 13:54:02,310 | INFO     | aborting loop
[2025-10-22 08:54:32] 2025-10-22 13:54:02,381 | INFO     | all payload control threads have been joined
[2025-10-22 08:54:32] 2025-10-22 13:54:02,958 | INFO     | all data control threads have been joined
[2025-10-22 08:54:32] 2025-10-22 13:54:03,136 | INFO     | [job] retrieve thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,166 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,167 | INFO     | [job] control thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 08:54:32] 2025-10-22 13:54:03,291 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,314 | INFO     | [job] job monitor thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,339 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,386 | INFO     | [payload] control thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,476 | INFO     | [payload] validate_post thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,571 | INFO     | [data] copytool_in thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:03,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 08:54:32] 2025-10-22 13:54:03,963 | INFO     | [data] control thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:04,217 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:04,529 | INFO     | [payload] failed_post thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:04,581 | INFO     | [job] validate thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:05,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 08:54:32] 2025-10-22 13:54:05,275 | INFO     | [data] copytool_out thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:06,090 | INFO     | [job] queue monitor thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:07,932 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 08:54:32] 2025-10-22 13:54:19,848 | INFO     | [monitor] cgroup control has ended
[2025-10-22 08:54:32] 2025-10-22 13:54:21,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741789595456)>', '<ExcThread(monitor, started 139741274019584)>']
[2025-10-22 08:54:32] 2025-10-22 13:54:26,294 | INFO     | all workflow threads have been joined
[2025-10-22 08:54:32] 2025-10-22 13:54:26,294 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 08:54:32] 2025-10-22 13:54:26,295 | INFO     | traces error code: 0
[2025-10-22 08:54:32] 2025-10-22 13:54:26,295 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 08:54:32] 2025-10-22 13:54:32,344 | INFO     | PID=2109374 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 08:54:32] 2025-10-22 13:54:32,344 | INFO     | .. there are 2 such processes running
[2025-10-22 08:54:32] 2025-10-22 13:54:32,345 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 08:54:32] 2025-10-22 13:54:32,345 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 08:54:32] 2025-10-22 13:54:32,345 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 08:54:32] 2025-10-22 13:54:32,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 08:54:32] 2025-10-22 13:54:32,345 | INFO     | [monitor] control thread has ended
[2025-10-22 08:54:32] 2025-10-22 13:54:32,416 [wrapper] ==== pilot stdout END ====
[2025-10-22 08:54:32] 2025-10-22 13:54:32,418 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 08:54:32] 2025-10-22 13:54:32,419 [wrapper] pilotpid: 2109374
[2025-10-22 08:54:32] 2025-10-22 13:54:32,420 [wrapper] Pilot exit status: 0
[2025-10-22 08:54:32] 2025-10-22 13:54:32,425 [wrapper] pandaids: 6853307346
[2025-10-22 08:54:32] 2025-10-22 13:54:32,448 [wrapper] cleanup supervisor_pilot 2167086 2109375
[2025-10-22 08:54:32] 2025-10-22 13:54:32,449 [wrapper] Test setup, not cleaning
[2025-10-22 08:54:32] 2025-10-22 13:54:32,450 [wrapper] apfmon messages muted
[2025-10-22 08:54:32] 2025-10-22 13:54:32,452 [wrapper] ==== wrapper stdout END ====
[2025-10-22 08:54:32] 2025-10-22 13:54:32,453 [wrapper] ==== wrapper stderr END ====
[2025-10-22 08:54:32]  *** Error codes and diagnostics ***
[2025-10-22 08:54:32]     "exeErrorCode": 0,
[2025-10-22 08:54:32]     "exeErrorDiag": "",
[2025-10-22 08:54:32]     "pilotErrorCode": 0,
[2025-10-22 08:54:32]     "pilotErrorDiag": "",
[2025-10-22 08:54:32]  *** Listing of results directory ***
[2025-10-22 08:54:32] total 427700
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc    557409 Oct 22 00:29 pilot3.tar.gz
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc      5112 Oct 22 01:08 queuedata.json
[2025-10-22 08:54:32] -rwx------. 1 boinc boinc     36292 Oct 22 01:10 runpilot2-wrapper.sh
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc       100 Oct 22 08:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 08:54:32] -rwxr-xr-x. 1 boinc boinc      7986 Oct 22 08:21 run_atlas
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc       105 Oct 22 08:21 job.xml
[2025-10-22 08:54:32] -rw-r--r--. 2 boinc boinc     15120 Oct 22 08:21 start_atlas.sh
[2025-10-22 08:54:32] drwxrwx--x. 1 boinc boinc        76 Oct 22 08:21 shared
[2025-10-22 08:54:32] -rw-r--r--. 2 boinc boinc    569679 Oct 22 08:21 input.tar.gz
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc     10054 Oct 22 08:21 init_data.xml
[2025-10-22 08:54:32] -rw-r--r--. 2 boinc boinc 226081846 Oct 22 08:21 EVNT.46771634._003277.pool.root.1
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc         0 Oct 22 08:21 boinc_setup_complete
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc         0 Oct 22 08:21 boinc_lockfile
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc      2560 Oct 22 08:21 pandaJob.out
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc    977605 Oct 22 08:21 agis_schedconf.cvmfs.json
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc   1560740 Oct 22 08:21 agis_ddmendpoints.agis.ALL.json
[2025-10-22 08:54:32] drwx------. 1 boinc boinc       414 Oct 22 08:21 pilot3
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc 206627899 Oct 22 08:53 HITS.46771637._082127.pool.root.1
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc       529 Oct 22 08:53 boinc_task_state.xml
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc      1034 Oct 22 08:53 memory_monitor_summary.json
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc    355972 Oct 22 08:53 log.46771637._082127.job.log.tgz.1
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc      7798 Oct 22 08:54 heartbeat.json
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc      8192 Oct 22 08:54 boinc_mmap_file
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc        27 Oct 22 08:54 wrapper_checkpoint.txt
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc       822 Oct 22 08:54 pilotlog.txt
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc        95 Oct 22 08:54 pilot_heartbeat.json
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc    326825 Oct 22 08:54 log.46771637._082127.job.log.1
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc       357 Oct 22 08:54 output.list
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc       620 Oct 22 08:54 runtime_log
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc    706560 Oct 22 08:54 result.tar.gz
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc      8727 Oct 22 08:54 runtime_log.err
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc       652 Oct 22 08:54 BBJMDmWEhV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmH6gMDmdecX5m.diag
[2025-10-22 08:54:32] -rw-r--r--. 1 boinc boinc     21575 Oct 22 08:54 stderr.txt
[2025-10-22 08:54:32] HITS file was successfully produced:
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc 206627899 Oct 22 08:53 shared/HITS.pool.root.1
[2025-10-22 08:54:32]  *** Contents of shared directory: ***
[2025-10-22 08:54:32] total 423840
[2025-10-22 08:54:32] -rw-r--r--. 2 boinc boinc     15120 Oct 22 08:21 start_atlas.sh
[2025-10-22 08:54:32] -rw-r--r--. 2 boinc boinc    569679 Oct 22 08:21 input.tar.gz
[2025-10-22 08:54:32] -rw-r--r--. 2 boinc boinc 226081846 Oct 22 08:21 ATLAS.root_0
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc 206627899 Oct 22 08:53 HITS.pool.root.1
[2025-10-22 08:54:32] -rw-------. 1 boinc boinc    706560 Oct 22 08:54 result.tar.gz
08:54:33 (2105493): run_atlas exited; CPU time 20441.652715
08:54:33 (2105493): called boinc_finish(0)

</stderr_txt>
]]>

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