Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 12:24:44 (19444): vboxwrapper version 26210
2025-10-22 12:24:44 (19444): BOINC client version: 8.2.4
2025-10-22 12:24:46 (19444): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-22 12:24:46 (19444): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 12:24:47 (19444): Create VM. (boinc_22091eade2b5e79d, slot#4)
2025-10-22 12:24:47 (19444): Setting Memory Size for VM. (4200MB)
2025-10-22 12:24:48 (19444): Setting CPU Count for VM. (2)
2025-10-22 12:24:48 (19444): Setting Chipset Options for VM.
2025-10-22 12:24:49 (19444): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 12:24:49 (19444): Setting Boot Options for VM.
2025-10-22 12:24:50 (19444): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 12:24:50 (19444): Enabling VM Network Access.
2025-10-22 12:24:51 (19444): Disabling USB Support for VM.
2025-10-22 12:24:51 (19444): Disabling COM Port Support for VM.
2025-10-22 12:24:52 (19444): Disabling LPT Port Support for VM.
2025-10-22 12:24:52 (19444): Disabling Audio Support for VM.
2025-10-22 12:24:53 (19444): Disabling Clipboard Support for VM.
2025-10-22 12:24:53 (19444): Disabling Drag and Drop Support for VM.
2025-10-22 12:24:53 (19444): Adding storage controller(s) to VM.
2025-10-22 12:24:54 (19444): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 12:24:57 (19444): Adding VirtualBox Guest Additions to VM.
2025-10-22 12:24:57 (19444): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 12:24:58 (19444): forwarding host port 63235 to guest port 80
2025-10-22 12:24:58 (19444): Enabling remote desktop for VM.
2025-10-22 12:24:59 (19444): Required extension pack not installed, remote desktop not enabled.
2025-10-22 12:24:59 (19444): Enabling shared directory for VM.
2025-10-22 12:24:59 (19444): Starting VM using VBoxManage interface. (boinc_22091eade2b5e79d, slot#4)
2025-10-22 12:25:10 (19444): Successfully started VM. (PID = '20236')
2025-10-22 12:25:10 (19444): Reporting VM Process ID to BOINC.
2025-10-22 12:25:10 (19444): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-22 12:25:10 (19444): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 12:25:10 (19444): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-22 12:25:10 (19444): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 12:25:10 (19444): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 12:25:10 (19444): Detected: Web Application Enabled (http://localhost:63235)
2025-10-22 12:25:10 (19444): Preference change detected
2025-10-22 12:25:10 (19444): Setting CPU throttle for VM. (60%)
2025-10-22 12:25:10 (19444): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 12:25:12 (19444): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 12:25:12 (19444): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 12:25:15 (19444): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 12:25:15 (19444): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 12:25:15 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 12:25:16 (19444): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 12:25:25 (19444): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 12:25:25 (19444): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-22 12:25:43 (19444): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 12:25:43 (19444): Guest Log: 00:00:00.000253 main     Log opened 2025-10-22T12:25:41.967090000Z
2025-10-22 12:25:43 (19444): Guest Log: 00:00:00.000480 main     OS Product: Linux
2025-10-22 12:25:43 (19444): Guest Log: 00:00:00.000521 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 12:25:43 (19444): Guest Log: 00:00:00.000555 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 12:25:43 (19444): Guest Log: 00:00:00.000591 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 12:25:43 (19444): Guest Log: 00:00:00.000592 main     Process ID: 1235
2025-10-22 12:25:43 (19444): Guest Log: 00:00:00.000593 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 12:25:43 (19444): Guest Log: 00:00:00.003607 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 12:25:43 (19444): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 12:25:43 (19444): Guest Log: [INFO] Mounting shared directory
2025-10-22 12:25:43 (19444): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 12:25:52 (19444): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 12:25:52 (19444): Guest Log: [INFO] Detected branch: prod
2025-10-22 12:25:52 (19444): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 12:25:52 (19444): Guest Log: Copying input files
2025-10-22 12:25:53 (19444): Guest Log: 00:00:10.018480 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 967 391 000ns (GuestNow=1 761 128 753 009 925 000 ns GuestLast=1 761 135 941 977 316 000 ns fSetTimeLastLoop=true )
2025-10-22 12:25:56 (19444): Guest Log: Copied input files into RunAtlas.
2025-10-22 12:25:56 (19444): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 12:25:56 (19444): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 12:25:56 (19444): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 12:25:56 (19444): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 12:26:06 (19444): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 12:26:06 (19444): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 12:26:06 (19444): Guest Log: 2.6.3.0 1508 0 30068 151992 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 12:26:08 (19444): Guest Log: copied the webapp to /var/www
2025-10-22 12:26:08 (19444): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-22 12:26:08 (19444): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-22 12:26:08 (19444): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 12:26:08 (19444): Guest Log:  *** Starting ATLAS job. (PandaID=6853278548 taskID=46771637) ***
2025-10-22 12:38:28 (19444): Guest Log:  *** Job finished ***
2025-10-22 12:38:28 (19444): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:37:54,078 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:37:54,078 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:19,824 | INFO     | [monitor] cgroup control has ended
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:20,825 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528040019776)>', '<ExcThread(monitor, started 140527202711296)>']
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:21,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:21,326 | INFO     | [monitor] control thread has ended
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:25,889 | INFO     | all workflow threads have been joined
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:25,890 | INFO     | end of generic workflow (traces error code: 0)
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:25,890 | INFO     | traces error code: 0
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:25,891 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,347 [wrapper] ==== pilot stdout END ====
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,383 [wrapper] ==== wrapper stdout RESUME ====
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,427 [wrapper] pilotpid: 5898
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,445 [wrapper] Pilot exit status: 0
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,557 [wrapper] pandaids: 6853278548
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,812 [wrapper] cleanup supervisor_pilot  5904 5899
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,827 [wrapper] Test setup, not cleaning
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,840 [wrapper] apfmon messages muted
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,852 [wrapper] ==== wrapper stdout END ====
2025-10-22 12:38:28 (19444): Guest Log: 2025-10-22 10:38:26,863 [wrapper] ==== wrapper stderr END ====
2025-10-22 12:38:28 (19444): Guest Log:  *** Error codes and diagnostics ***
2025-10-22 12:38:28 (19444): Guest Log:     "exeErrorCode": 65,
2025-10-22 12:38:28 (19444): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-10-22 12:38:28 (19444): Guest Log:     "pilotErrorCode": 1305,
2025-10-22 12:38:28 (19444): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-10-22 12:38:28 (19444): Guest Log:  *** Listing of results directory ***
2025-10-22 12:38:28 (19444): Guest Log: total 4224
2025-10-22 12:38:28 (19444): Guest Log: -rw-r--r--. 1 atlas atlas  557409 Oct 22 04:26 pilot3.tar.gz
2025-10-22 12:38:28 (19444): Guest Log: -rwx------. 1 atlas atlas   36292 Oct 22 04:38 runpilot2-wrapper.sh
2025-10-22 12:38:28 (19444): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Oct 22 04:38 queuedata.json
2025-10-22 12:38:28 (19444): Guest Log: -rwxr-xr-x. 1 atlas atlas    8618 Oct 22 10:25 init_data.xml
2025-10-22 12:38:28 (19444): Guest Log: -rwxr-xr-x. 1 atlas atlas  569677 Oct 22 10:25 input.tar.gz
2025-10-22 12:38:28 (19444): Guest Log: -rwxr-xr-x. 1 atlas atlas   15120 Oct 22 10:25 start_atlas.sh
2025-10-22 12:38:28 (19444): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 22 10:25 EVNT.46771634._003231.pool.root.1 -> /data/./ATLAS.root_0
2025-10-22 12:38:28 (19444): Guest Log: -rw-r--r--. 1 atlas atlas    2560 Oct 22 10:26 pandaJob.out
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas  976986 Oct 22 10:27 agis_schedconf.cvmfs.json
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas 1560740 Oct 22 10:27 agis_ddmendpoints.agis.ALL.json
2025-10-22 12:38:28 (19444): Guest Log: drwx------. 5 atlas atlas    4096 Oct 22 10:27 pilot3
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas   52280 Oct 22 10:35 log.46771637._080827.job.log.tgz.1
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas    8169 Oct 22 10:37 heartbeat.json
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas      95 Oct 22 10:37 pilot_heartbeat.json
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas    4805 Oct 22 10:38 pilotlog.txt
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas  196968 Oct 22 10:38 log.46771637._080827.job.log.1
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas     188 Oct 22 10:38 output.list
2025-10-22 12:38:28 (19444): Guest Log: -rw-r--r--. 1 atlas atlas     620 Oct 22 10:38 runtime_log
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas  266240 Oct 22 10:38 result.tar.gz
2025-10-22 12:38:28 (19444): Guest Log: -rw-r--r--. 1 atlas atlas    8495 Oct 22 10:38 runtime_log.err
2025-10-22 12:38:28 (19444): Guest Log: -rw-------. 1 atlas atlas     648 Oct 22 10:38 dCOLDmSnfV8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0ygMDm0I2pKm.diag
2025-10-22 12:38:28 (19444): Guest Log: Looking for outputfile HITS.46771637._080827.pool.root.1
2025-10-22 12:38:28 (19444): Guest Log: No HITS file was produced
2025-10-22 12:38:28 (19444): Guest Log: Successfully finished the ATLAS job!
2025-10-22 12:38:28 (19444): Guest Log: Copying the results back to the shared directory!
2025-10-22 12:38:28 (19444): Guest Log:  *** Contents of shared directory: ***
2025-10-22 12:38:28 (19444): Guest Log: total 222756
2025-10-22 12:38:28 (19444): Guest Log: -rwxrwxrwx. 1 root root 227233728 Oct 22 10:24 ATLAS.root_0
2025-10-22 12:38:28 (19444): Guest Log: -rwxrwxrwx. 1 root root      8618 Oct 22 10:24 init_data.xml
2025-10-22 12:38:28 (19444): Guest Log: -rwxrwxrwx. 1 root root    569677 Oct 22 10:24 input.tar.gz
2025-10-22 12:38:28 (19444): Guest Log: -rwxrwxrwx. 1 root root    266240 Oct 22 10:38 result.tar.gz
2025-10-22 12:38:28 (19444): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 22 10:24 start_atlas.sh
2025-10-22 12:38:28 (19444): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-22 12:38:28 (19444): VM Completion File Detected.
2025-10-22 12:38:28 (19444): Powering off VM.
2025-10-22 12:38:30 (19444): Successfully stopped VM.
2025-10-22 12:38:30 (19444): Deregistering VM. (boinc_22091eade2b5e79d, slot#4)
2025-10-22 12:38:30 (19444): Removing network bandwidth throttle group from VM.
2025-10-22 12:38:30 (19444): Removing VM from VirtualBox.
2025-10-22 12:38:36 (19444): called boinc_finish(0)

</stderr_txt>
]]>

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