Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 15:45:54 (7088): vboxwrapper version 26210
2025-10-22 15:45:54 (7088): BOINC client version: 8.2.4
2025-10-22 15:45:55 (7088): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-22 15:45:55 (7088): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 15:45:55 (7088): Create VM. (boinc_d4cb1cf41c97a8b4, slot#1)
2025-10-22 15:45:56 (7088): Setting Memory Size for VM. (4400MB)
2025-10-22 15:45:56 (7088): Setting CPU Count for VM. (4)
2025-10-22 15:45:56 (7088): Setting Chipset Options for VM.
2025-10-22 15:45:57 (7088): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 15:45:57 (7088): Setting Boot Options for VM.
2025-10-22 15:45:57 (7088): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 15:45:58 (7088): Enabling VM Network Access.
2025-10-22 15:45:58 (7088): Disabling USB Support for VM.
2025-10-22 15:45:58 (7088): Disabling COM Port Support for VM.
2025-10-22 15:45:58 (7088): Disabling LPT Port Support for VM.
2025-10-22 15:45:59 (7088): Disabling Audio Support for VM.
2025-10-22 15:45:59 (7088): Disabling Clipboard Support for VM.
2025-10-22 15:45:59 (7088): Disabling Drag and Drop Support for VM.
2025-10-22 15:45:59 (7088): Adding storage controller(s) to VM.
2025-10-22 15:46:00 (7088): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 15:46:00 (7088): Adding VirtualBox Guest Additions to VM.
2025-10-22 15:46:00 (7088): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 15:46:01 (7088): forwarding host port 51113 to guest port 80
2025-10-22 15:46:01 (7088): Enabling remote desktop for VM.
2025-10-22 15:46:01 (7088): Enabling shared directory for VM.
2025-10-22 15:46:02 (7088): Starting VM using VBoxManage interface. (boinc_d4cb1cf41c97a8b4, slot#1)
2025-10-22 15:46:06 (7088): Successfully started VM. (PID = '17824')
2025-10-22 15:46:06 (7088): Reporting VM Process ID to BOINC.
2025-10-22 15:46:06 (7088): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-22 15:46:06 (7088): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 15:46:06 (7088): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-22 15:46:06 (7088): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 15:46:06 (7088): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 15:46:06 (7088): Detected: Web Application Enabled (http://localhost:51113)
2025-10-22 15:46:06 (7088): Detected: Remote Desktop Enabled (localhost:51114)
2025-10-22 15:46:06 (7088): Preference change detected
2025-10-22 15:46:06 (7088): Setting CPU throttle for VM. (90%)
2025-10-22 15:46:07 (7088): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 15:46:08 (7088): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 15:46:08 (7088): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 15:46:10 (7088): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 15:46:10 (7088): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 15:46:10 (7088): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 15:46:16 (7088): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 15:46:16 (7088): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-22 15:46:19 (7088): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 15:46:19 (7088): Guest Log: 00:00:00.000101 main     Log opened 2025-10-22T15:46:17.709658000Z
2025-10-22 15:46:19 (7088): Guest Log: 00:00:00.000173 main     OS Product: Linux
2025-10-22 15:46:19 (7088): Guest Log: 00:00:00.000187 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 15:46:19 (7088): Guest Log: 00:00:00.000199 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 15:46:19 (7088): Guest Log: 00:00:00.000212 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 15:46:19 (7088): Guest Log: 00:00:00.000212 main     Process ID: 1304
2025-10-22 15:46:19 (7088): Guest Log: 00:00:00.000212 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 15:46:19 (7088): Guest Log: 00:00:00.000616 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 15:46:19 (7088): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 15:46:19 (7088): Guest Log: [INFO] Mounting shared directory
2025-10-22 15:46:19 (7088): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 15:46:22 (7088): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 15:46:22 (7088): Guest Log: [INFO] Detected branch: prod
2025-10-22 15:46:22 (7088): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 15:46:22 (7088): Guest Log: Copying input files
2025-10-22 15:46:23 (7088): Guest Log: Copied input files into RunAtlas.
2025-10-22 15:46:23 (7088): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 15:46:23 (7088): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 15:46:23 (7088): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 15:46:23 (7088): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 15:46:29 (7088): Guest Log: 00:00:10.001747 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 187 482 000ns (GuestNow=1 761 140 789 523 389 000 ns GuestLast=1 761 147 977 710 871 000 ns fSetTimeLastLoop=true )
2025-10-22 15:46:51 (7088): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 15:46:52 (7088): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 15:46:52 (7088): Guest Log: 2.6.3.0 1579 0 30184 151996 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 15:46:52 (7088): Guest Log: copied the webapp to /var/www
2025-10-22 15:46:52 (7088): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-22 15:46:52 (7088): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-22 15:46:52 (7088): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 15:46:52 (7088): Guest Log:  *** Starting ATLAS job. (PandaID=6853228872 taskID=46771637) ***
2025-10-22 16:07:53 (7088): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 16:08:13 (7088): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 16:20:45 (7088): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 16:21:05 (7088): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 16:23:15 (7088): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 16:23:35 (7088): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 16:25:26 (7088): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 16:25:46 (7088): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 16:26:26 (7088): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 16:26:46 (7088): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 16:26:56 (7088): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 16:27:16 (7088): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 17:01:03 (7088): Preference change detected
2025-10-22 17:01:03 (7088): Setting CPU throttle for VM. (100%)
2025-10-22 17:01:03 (7088): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 17:09:53 (7088): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 17:10:13 (7088): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 17:28:36 (7088): Status Report: Elapsed Time: '6000.000000'
2025-10-22 17:28:36 (7088): Status Report: CPU Time: '21039.140625'
2025-10-22 18:04:58 (7088): Guest Log:  *** Job finished ***
2025-10-22 18:04:58 (7088): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:19,177 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:28,991 [wrapper] supervise_pilot (15 min periods counter: 10)
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:42,276 | INFO     | [monitor] cgroup control has ended
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:44,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140344781412160)>', '<ExcThread(monitor, started 140343685146368)>']
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:44,644 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:44,644 | INFO     | [monitor] control thread has ended
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,499 | INFO     | all workflow threads have been joined
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,500 | INFO     | end of generic workflow (traces error code: 0)
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,500 | INFO     | traces error code: 0
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,500 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,598 [wrapper] ==== pilot stdout END ====
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,601 [wrapper] ==== wrapper stdout RESUME ====
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,604 [wrapper] pilotpid: 5978
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,607 [wrapper] Pilot exit status: 0
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,691 [wrapper] pandaids: 6853228872
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,709 [wrapper] cleanup supervisor_pilot  8265 5979
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,712 [wrapper] Test setup, not cleaning
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,715 [wrapper] apfmon messages muted
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,718 [wrapper] ==== wrapper stdout END ====
2025-10-22 18:04:58 (7088): Guest Log: 2025-10-22 16:02:49,721 [wrapper] ==== wrapper stderr END ====
2025-10-22 18:04:58 (7088): Guest Log:  *** Error codes and diagnostics ***
2025-10-22 18:04:58 (7088): Guest Log:     "exeErrorCode": 0,
2025-10-22 18:04:58 (7088): Guest Log:     "exeErrorDiag": "",
2025-10-22 18:04:58 (7088): Guest Log:     "pilotErrorCode": 0,
2025-10-22 18:04:58 (7088): Guest Log:     "pilotErrorDiag": "",
2025-10-22 18:04:58 (7088): Guest Log:  *** Listing of results directory ***
2025-10-22 18:04:58 (7088): Guest Log: total 203724
2025-10-22 18:04:58 (7088): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 21 23:28 pilot3.tar.gz
2025-10-22 18:04:58 (7088): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 22 00:18 runpilot2-wrapper.sh
2025-10-22 18:04:58 (7088): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 22 00:18 queuedata.json
2025-10-22 18:04:58 (7088): Guest Log: -rwxr-xr-x. 1 atlas atlas      8613 Oct 22 13:46 init_data.xml
2025-10-22 18:04:58 (7088): Guest Log: -rwxr-xr-x. 1 atlas atlas    569675 Oct 22 13:46 input.tar.gz
2025-10-22 18:04:58 (7088): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 22 13:46 start_atlas.sh
2025-10-22 18:04:58 (7088): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 22 13:46 EVNT.46771634._003090.pool.root.1 -> /data/./ATLAS.root_0
2025-10-22 18:04:58 (7088): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 22 13:46 pandaJob.out
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas    977605 Oct 22 13:47 agis_schedconf.cvmfs.json
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 22 13:47 agis_ddmendpoints.agis.ALL.json
2025-10-22 18:04:58 (7088): Guest Log: drwx------. 5 atlas atlas      4096 Oct 22 13:47 pilot3
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas 201946234 Oct 22 16:01 HITS.46771637._077612.pool.root.1
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas      1027 Oct 22 16:01 memory_monitor_summary.json
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas    318790 Oct 22 16:01 log.46771637._077612.job.log.tgz.1
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas      7791 Oct 22 16:01 heartbeat.json
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas        95 Oct 22 16:02 pilot_heartbeat.json
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 22 16:02 pilotlog.txt
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas   1098103 Oct 22 16:02 log.46771637._077612.job.log.1
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas       357 Oct 22 16:02 output.list
2025-10-22 18:04:58 (7088): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 22 16:02 runtime_log
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas   1433600 Oct 22 16:02 result.tar.gz
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas       650 Oct 22 16:02 s37LDmOjbV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTB4NDmNHMPEo.diag
2025-10-22 18:04:58 (7088): Guest Log: -rw-r--r--. 1 atlas atlas      8627 Oct 22 16:02 runtime_log.err
2025-10-22 18:04:58 (7088): Guest Log: Looking for outputfile HITS.46771637._077612.pool.root.1
2025-10-22 18:04:58 (7088): Guest Log: HITS file was successfully produced
2025-10-22 18:04:58 (7088): Guest Log: -rw-------. 1 atlas atlas 201946234 Oct 22 16:01 /home/atlas/RunAtlas/HITS.46771637._077612.pool.root.1
2025-10-22 18:04:58 (7088): Guest Log: Successfully finished the ATLAS job!
2025-10-22 18:04:58 (7088): Guest Log: Copying the results back to the shared directory!
2025-10-22 18:04:58 (7088): Guest Log:  *** Contents of shared directory: ***
2025-10-22 18:04:58 (7088): Guest Log: total 419544
2025-10-22 18:04:58 (7088): Guest Log: -rwxrwxrwx. 1 root root 225627423 Oct 22 13:45 ATLAS.root_0
2025-10-22 18:04:58 (7088): Guest Log: -rwxrwxrwx. 1 root root 201946234 Oct 22  2025 HITS.pool.root.1
2025-10-22 18:04:58 (7088): Guest Log: -rwxrwxrwx. 1 root root      8613 Oct 22 13:45 init_data.xml
2025-10-22 18:04:58 (7088): Guest Log: -rwxrwxrwx. 1 root root    569675 Oct 22 04:57 input.tar.gz
2025-10-22 18:04:58 (7088): Guest Log: -rwxrwxrwx. 1 root root   1433600 Oct 22  2025 result.tar.gz
2025-10-22 18:04:58 (7088): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 22 04:57 start_atlas.sh
2025-10-22 18:04:58 (7088): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-22 18:04:58 (7088): VM Completion File Detected.
2025-10-22 18:04:58 (7088): Powering off VM.
2025-10-22 18:04:58 (7088): Successfully stopped VM.
2025-10-22 18:04:58 (7088): Deregistering VM. (boinc_d4cb1cf41c97a8b4, slot#1)
2025-10-22 18:04:58 (7088): Removing network bandwidth throttle group from VM.
2025-10-22 18:04:59 (7088): Removing VM from VirtualBox.
2025-10-22 18:05:04 (7088): called boinc_finish(0)

</stderr_txt>
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