Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
07:58:00 (743226): wrapper (7.7.26015): starting
07:58:00 (743226): wrapper: running run_atlas (--nthreads 7)
[2025-10-22 07:58:00] Arguments: --nthreads 7
[2025-10-22 07:58:00] Threads: 7
[2025-10-22 07:58:00] Checking for CVMFS
[2025-10-22 07:58:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 07:58:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 07:58:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 07:58:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 07:58:00] 2.13.2.0 13980 947 48776 151994 0 188 3414129 10240001 22 130560 0 5570299 99.998 35394 308 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-22 07:58:00] CVMFS is ok
[2025-10-22 07:58:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 07:58:00] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-22 07:58:00] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-22 07:58:00] Further information can be found at the LHC@home message board.
[2025-10-22 07:58:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 07:58:00] Checking for apptainer binary...
[2025-10-22 07:58:00] apptainer is not installed, using version from CVMFS
[2025-10-22 07:58:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 07:58:01] pots
[2025-10-22 07:58:01] apptainer works
[2025-10-22 07:58:01] Set ATHENA_PROC_NUMBER=7
[2025-10-22 07:58:01] Set ATHENA_CORE_NUMBER=7
[2025-10-22 07:58:01] Starting ATLAS job with PandaID=6854509745
[2025-10-22 07:58:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 08:17:40]  *** The last 200 lines of the pilot log: ***
[2025-10-22 08:17:40]  protocol_id=None
[2025-10-22 08:17:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-22 08:17:40]  replicas=None
[2025-10-22 08:17:40]  scope=mc23_13p6TeV
[2025-10-22 08:17:40]  status=None
[2025-10-22 08:17:40]  status_code=0
[2025-10-22 08:17:40]  storage_token=
[2025-10-22 08:17:40]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6854509745/log.46809188._006122.job.log.tgz.1
[2025-10-22 08:17:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/1e/log.46809188._006122.job.log.tgz.1
[2025-10-22 08:17:40]  workdir=None
[2025-10-22 08:17:40] ]
[2025-10-22 08:17:40] 2025-10-22 12:17:01,639 | INFO     | transferring file log.46809188._006122.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6854509745/log.46809188._006122.job.log.tgz.1 to /var/lib/boinc
[2025-10-22 08:17:40] 2025-10-22 12:17:01,639 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6854509745/log.46809188._006122.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.468091
[2025-10-22 08:17:40] 2025-10-22 12:17:01,659 | INFO     | adding to output.list: log.46809188._006122.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/72/1e/log.46809188._006122.job.log.tg
[2025-10-22 08:17:40] 2025-10-22 12:17:01,660 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-22 08:17:40] 2025-10-22 12:17:01,661 | INFO     | summary of transferred files:
[2025-10-22 08:17:40] 2025-10-22 12:17:01,661 | INFO     |  -- lfn=log.46809188._006122.job.log.tgz.1, status_code=0, status=transferred
[2025-10-22 08:17:40] 2025-10-22 12:17:01,661 | INFO     | stage-out finished correctly
[2025-10-22 08:17:40] 2025-10-22 12:17:01,682 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-22 08:17:40] 2025-10-22 12:17:01,701 | INFO     | job 6854509745 has state=finished
[2025-10-22 08:17:40] 2025-10-22 12:17:01,701 | INFO     | preparing for final server update for job 6854509745 in state='finished'
[2025-10-22 08:17:40] 2025-10-22 12:17:01,702 | INFO     | this job has now completed (state=finished)
[2025-10-22 08:17:40] 2025-10-22 12:17:01,702 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-22 08:17:40] 2025-10-22 12:17:01,702 | INFO     | log transfer has been attempted: DONE
[2025-10-22 08:17:40] 2025-10-22 12:17:01,702 | INFO     | job 6854509745 has finished - writing final server update
[2025-10-22 08:17:40] 2025-10-22 12:17:01,703 | INFO     | total number of processed events: 400 (read)
[2025-10-22 08:17:40] 2025-10-22 12:17:01,704 | INFO     | executing command: lscpu
[2025-10-22 08:17:40] 2025-10-22 12:17:01,718 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-22 08:17:40] 2025-10-22 12:17:03,242 | INFO     | monitor loop #91: job 0:6854509745 is in state 'finished'
[2025-10-22 08:17:40] 2025-10-22 12:17:03,242 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 08:17:40] 2025-10-22 12:17:03,447 | INFO     | time since job start (1134s) is within the limit (172800.0s)
[2025-10-22 08:17:40] 2025-10-22 12:17:05,452 | INFO     | time since job start (1136s) is within the limit (172800.0s)
[2025-10-22 08:17:40] 2025-10-22 12:17:05,745 | INFO     | monitor loop #92: job 0:6854509745 is in state 'finished'
[2025-10-22 08:17:40] 2025-10-22 12:17:05,745 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 08:17:40] 2025-10-22 12:17:07,458 | INFO     | time since job start (1138s) is within the limit (172800.0s)
[2025-10-22 08:17:40] 2025-10-22 12:17:08,247 | INFO     | monitor loop #93: job 0:6854509745 is in state 'finished'
[2025-10-22 08:17:40] 2025-10-22 12:17:08,247 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 08:17:40] 2025-10-22 12:17:08,297 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-22 08:17:40] 2025-10-22 12:17:08,298 | INFO     | found 14 cores (14 cores per socket, 1 socket) , CPU MHz: 1524.9388571428572
[2025-10-22 08:17:40] 2025-10-22 12:17:08,299 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6854509745/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 08:17:40] 2025-10-22 12:17:08,299 | INFO     | extracted standard info from prmon json
[2025-10-22 08:17:40] 2025-10-22 12:17:08,299 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 08:17:40] 2025-10-22 12:17:08,299 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 08:17:40] 2025-10-22 12:17:08,299 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 08:17:40] 2025-10-22 12:17:08,299 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 08:17:40] 2025-10-22 12:17:08,299 | INFO     | fitting pss+swap vs Time
[2025-10-22 08:17:40] 2025-10-22 12:17:08,299 | INFO     | sum of square deviations: 532103.0
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | sum of deviations: -133374212.5
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | mean x: 1761134948.5
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | mean y: 2858790.25
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | -- intersect: 441439924287.7487
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | intersect: 441439924287.7487
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | chi2: 0.017049474630956466
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | -- intersect: 441439924287.7487
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | current memory leak: -250.65 B/s (using 12 data points, chi2=0.02)
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | could have reported an average CPU frequency of 1365 MHz (4 samples)
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | ..............................
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | . Timing measurements:
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | . get job = 0 s
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | . initial setup = 2 s
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | . payload setup = 3 s
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | . stage-in = 0 s
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | . payload execution = 1114 s
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | . stage-out = 0 s
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | . log creation = 0 s
[2025-10-22 08:17:40] 2025-10-22 12:17:08,300 | INFO     | ..............................
[2025-10-22 08:17:40] 2025-10-22 12:17:08,320 | INFO     | 
[2025-10-22 08:17:40] 2025-10-22 12:17:08,320 | INFO     | job summary report
[2025-10-22 08:17:40] 2025-10-22 12:17:08,320 | INFO     | --------------------------------------------------
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | PanDA job id: 6854509745
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | task id: 46809188
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | errors: (none)
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | pilot state: finished 
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | transexitcode: 0
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | exeerrorcode: 0
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | exeerrordiag: 
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | exitcode: 0
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | exitmsg: OK
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | cpuconsumptiontime: 6922 s
[2025-10-22 08:17:40] 2025-10-22 12:17:08,321 | INFO     | nevents: 400
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | neventsw: 0
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | pid: 753436
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | pgrp: 753436
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | corecount: 7
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | event service: False
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | sizes: {0: 2348674, 1: 2348873, 3: 2349135, 11: 2349163, 1118: 2373705, 1119: 2382901, 1126: 2383039}
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | --------------------------------------------------
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | 
[2025-10-22 08:17:40] 2025-10-22 12:17:08,322 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-22 08:17:40] 2025-10-22 12:17:08,347 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,348 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,348 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,348 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,348 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,348 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,348 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,349 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 08:17:40] 2025-10-22 12:17:08,350 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,350 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 08:17:40] 2025-10-22 12:17:08,350 | INFO     | job 6854509745 has completed (purged errors)
[2025-10-22 08:17:40] 2025-10-22 12:17:08,350 | INFO     | overall cleanup function is called
[2025-10-22 08:17:40] 2025-10-22 12:17:09,357 | INFO     | --- collectZombieJob: --- 10, [753436]
[2025-10-22 08:17:40] 2025-10-22 12:17:09,357 | INFO     | zombie collector waiting for pid 753436
[2025-10-22 08:17:40] 2025-10-22 12:17:09,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 08:17:40] 2025-10-22 12:17:09,357 | INFO     | collected zombie processes
[2025-10-22 08:17:40] 2025-10-22 12:17:09,357 | INFO     | will attempt to kill all subprocesses of pid=753436
[2025-10-22 08:17:40] 2025-10-22 12:17:09,432 | INFO     | process IDs to be killed: [753436] (in reverse order)
[2025-10-22 08:17:40] 2025-10-22 12:17:09,464 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 08:17:40] 2025-10-22 12:17:09,464 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 08:17:40] 2025-10-22 12:17:09,465 | INFO     | did not find any defunct processes belonging to 753436
[2025-10-22 08:17:40] 2025-10-22 12:17:09,466 | INFO     | did not find any defunct processes belonging to 753436
[2025-10-22 08:17:40] 2025-10-22 12:17:09,466 | INFO     | ready for new job
[2025-10-22 08:17:40] 2025-10-22 12:17:09,466 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 08:17:40] 2025-10-22 12:17:09,467 | INFO     | ***************************************
[2025-10-22 08:17:40] 2025-10-22 12:17:09,467 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 08:17:40] 2025-10-22 12:17:09,467 | INFO     | ***************************************
[2025-10-22 08:17:40] 2025-10-22 12:17:09,467 | INFO     | 
[2025-10-22 08:17:40] 2025-10-22 12:17:09,467 | INFO     | architecture information:
[2025-10-22 08:17:40] 2025-10-22 12:17:09,467 | INFO     | executing command: cat /etc/os-release
[2025-10-22 08:17:40] 2025-10-22 12:17:09,479 | INFO     | cat /etc/os-release:
[2025-10-22 08:17:40] NAME="CentOS Linux"
[2025-10-22 08:17:40] VERSION="7 (Core)"
[2025-10-22 08:17:40] ID="centos"
[2025-10-22 08:17:40] ID_LIKE="rhel fedora"
[2025-10-22 08:17:40] VERSION_ID="7"
[2025-10-22 08:17:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 08:17:40] ANSI_COLOR="0;31"
[2025-10-22 08:17:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 08:17:40] HOME_URL="https://www.centos.org/"
[2025-10-22 08:17:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 08:17:40] 
[2025-10-22 08:17:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 08:17:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 08:17:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 08:17:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 08:17:40] 
[2025-10-22 08:17:40] 2025-10-22 12:17:09,479 | INFO     | ***************************************
[2025-10-22 08:17:40] 2025-10-22 12:17:09,982 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-22 08:17:40] 2025-10-22 12:17:10,002 | INFO     | sufficient remaining disk space (562376474624 B)
[2025-10-22 08:17:40] 2025-10-22 12:17:10,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 08:17:40] 2025-10-22 12:17:10,003 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 08:17:40] 2025-10-22 12:17:10,003 | INFO     | update_server=False
[2025-10-22 08:17:40] 2025-10-22 12:17:10,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 08:17:40] 2025-10-22 12:17:10,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 08:17:40] 2025-10-22 12:17:10,004 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 08:17:40] 2025-10-22 12:17:10,004 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 08:17:40] 2025-10-22 12:17:10,005 | INFO     | aborting loop
[2025-10-22 08:17:40] 2025-10-22 12:17:10,021 | INFO     | [monitor] cgroup control has ended
[2025-10-22 08:17:40] 2025-10-22 12:17:10,047 | INFO     | all data control threads have been joined
[2025-10-22 08:17:40] 2025-10-22 12:17:10,348 | INFO     | all payload control threads have been joined
[2025-10-22 08:17:40] 2025-10-22 12:17:10,993 | INFO     | all job control threads have been joined
[2025-10-22 08:17:40] 2025-10-22 12:17:11,005 | INFO     | [job] retrieve thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,009 | INFO     | [job] queue monitor thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,010 | INFO     | [job] job monitor thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,053 | INFO     | [data] control thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,157 | INFO     | [payload] failed_post thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,353 | INFO     | [payload] control thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,415 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,670 | INFO     | [payload] validate_post thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,917 | INFO     | [data] copytool_in thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:11,999 | INFO     | [job] control thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:12,010 | INFO     | [data] copytool_out thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:12,139 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:12,209 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 08:17:40] 2025-10-22 12:17:12,231 | INFO     | [job] validate thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:12,257 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:12,330 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:16,215 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 08:17:40] 2025-10-22 12:17:16,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 136486856599360)>', '<ExcThread(monitor, started 136486125033216)>']
[2025-10-22 08:17:40] 2025-10-22 12:17:21,524 | INFO     | all workflow threads have been joined
[2025-10-22 08:17:40] 2025-10-22 12:17:21,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 08:17:40] 2025-10-22 12:17:21,524 | INFO     | traces error code: 0
[2025-10-22 08:17:40] 2025-10-22 12:17:21,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 08:17:40] 2025-10-22 12:17:40,577 | INFO     | PID=746950 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-22 08:17:40] 2025-10-22 12:17:40,577 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 08:17:40] 2025-10-22 12:17:40,577 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 08:17:40] 2025-10-22 12:17:40,577 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 08:17:40] 2025-10-22 12:17:40,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 08:17:40] 2025-10-22 12:17:40,577 | INFO     | [monitor] control thread has ended
[2025-10-22 08:17:40] 2025-10-22 12:17:40,622 [wrapper] ==== pilot stdout END ====
[2025-10-22 08:17:40] 2025-10-22 12:17:40,626 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 08:17:40] 2025-10-22 12:17:40,630 [wrapper] pilotpid: 746950
[2025-10-22 08:17:40] 2025-10-22 12:17:40,633 [wrapper] Pilot exit status: 0
[2025-10-22 08:17:40] 2025-10-22 12:17:40,646 [wrapper] pandaids: 6854509745
[2025-10-22 08:17:40] 2025-10-22 12:17:40,669 [wrapper] cleanup supervisor_pilot  762533 746951
[2025-10-22 08:17:40] 2025-10-22 12:17:40,671 [wrapper] Test setup, not cleaning
[2025-10-22 08:17:40] 2025-10-22 12:17:40,675 [wrapper] apfmon messages muted
[2025-10-22 08:17:40] 2025-10-22 12:17:40,679 [wrapper] ==== wrapper stdout END ====
[2025-10-22 08:17:40] 2025-10-22 12:17:40,682 [wrapper] ==== wrapper stderr END ====
[2025-10-22 08:17:40]  *** Error codes and diagnostics ***
[2025-10-22 08:17:40]     "exeErrorCode": 0,
[2025-10-22 08:17:40]     "exeErrorDiag": "",
[2025-10-22 08:17:40]     "pilotErrorCode": 0,
[2025-10-22 08:17:40]     "pilotErrorDiag": "",
[2025-10-22 08:17:40]  *** Listing of results directory ***
[2025-10-22 08:17:40] total 332264
[2025-10-22 08:17:40] -rw-r--r-- 1 root root    557409 Oct 21 19:28 pilot3.tar.gz
[2025-10-22 08:17:40] -rw-r--r-- 1 root root      5112 Oct 21 19:48 queuedata.json
[2025-10-22 08:17:40] -rwx------ 1 4871 1028     36292 Oct 21 19:51 runpilot2-wrapper.sh
[2025-10-22 08:17:40] -rw-r--r-- 1 root root       100 Oct 22 07:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 08:17:40] -rwxr-xr-x 1 root root      7986 Oct 22 07:58 run_atlas
[2025-10-22 08:17:40] -rw-r--r-- 1 root root       105 Oct 22 07:58 job.xml
[2025-10-22 08:17:40] -rw-r--r-- 2 root root 187765444 Oct 22 07:58 EVNT.46809186._000235.pool.root.1
[2025-10-22 08:17:40] -rw-r--r-- 1 root root      6797 Oct 22 07:58 init_data.xml
[2025-10-22 08:17:40] drwxrwx--x 2 root root      4096 Oct 22 07:58 shared
[2025-10-22 08:17:40] -rw-r--r-- 2 root root    569670 Oct 22 07:58 input.tar.gz
[2025-10-22 08:17:40] -rw-r--r-- 2 root root     15120 Oct 22 07:58 start_atlas.sh
[2025-10-22 08:17:40] -rw-r--r-- 1 root root         0 Oct 22 07:58 boinc_lockfile
[2025-10-22 08:17:40] -rw-r--r-- 1 root root      2492 Oct 22 07:58 pandaJob.out
[2025-10-22 08:17:40] -rw------- 1 root root    977665 Oct 22 07:58 agis_schedconf.cvmfs.json
[2025-10-22 08:17:40] -rw------- 1 root root   1560740 Oct 22 07:58 agis_ddmendpoints.agis.ALL.json
[2025-10-22 08:17:40] drwxr-xr-x 5  320  320      4096 Oct 22 07:58 pilot3
[2025-10-22 08:17:40] -rw------- 1 root root 147638559 Oct 22 08:16 HITS.46809188._006122.pool.root.1
[2025-10-22 08:17:40] -rw-r--r-- 1 root root       528 Oct 22 08:16 boinc_task_state.xml
[2025-10-22 08:17:40] -rw------- 1 root root      1016 Oct 22 08:17 memory_monitor_summary.json
[2025-10-22 08:17:40] -rw------- 1 root root    256117 Oct 22 08:17 log.46809188._006122.job.log.tgz.1
[2025-10-22 08:17:40] -rw------- 1 root root      7721 Oct 22 08:17 heartbeat.json
[2025-10-22 08:17:40] -rw-r--r-- 1 root root      8192 Oct 22 08:17 boinc_mmap_file
[2025-10-22 08:17:40] -rw-r--r-- 1 root root        26 Oct 22 08:17 wrapper_checkpoint.txt
[2025-10-22 08:17:40] -rw------- 1 root root       746 Oct 22 08:17 pilotlog.txt
[2025-10-22 08:17:40] -rw------- 1 root root        95 Oct 22 08:17 pilot_heartbeat.json
[2025-10-22 08:17:40] -rw------- 1 root root    210310 Oct 22 08:17 log.46809188._006122.job.log.1
[2025-10-22 08:17:40] -rw------- 1 root root       357 Oct 22 08:17 output.list
[2025-10-22 08:17:40] -rw-r--r-- 1 root root       620 Oct 22 08:17 runtime_log
[2025-10-22 08:17:40] -rw------- 1 root root    481280 Oct 22 08:17 result.tar.gz
[2025-10-22 08:17:40] -rw------- 1 root root       633 Oct 22 08:17 w5oNDmzJbV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDms53NDmNHg5Sm.diag
[2025-10-22 08:17:40] -rw-r--r-- 1 root root      8731 Oct 22 08:17 runtime_log.err
[2025-10-22 08:17:40] -rw-r--r-- 1 root root     21889 Oct 22 08:17 stderr.txt
[2025-10-22 08:17:40] HITS file was successfully produced:
[2025-10-22 08:17:40] -rw------- 1 root root 147638559 Oct 22 08:16 shared/HITS.pool.root.1
[2025-10-22 08:17:40]  *** Contents of shared directory: ***
[2025-10-22 08:17:40] total 328604
[2025-10-22 08:17:40] -rw-r--r-- 2 root root 187765444 Oct 22 07:58 ATLAS.root_0
[2025-10-22 08:17:40] -rw-r--r-- 2 root root    569670 Oct 22 07:58 input.tar.gz
[2025-10-22 08:17:40] -rw-r--r-- 2 root root     15120 Oct 22 07:58 start_atlas.sh
[2025-10-22 08:17:40] -rw------- 1 root root 147638559 Oct 22 08:16 HITS.pool.root.1
[2025-10-22 08:17:40] -rw------- 1 root root    481280 Oct 22 08:17 result.tar.gz
08:17:41 (743226): run_atlas exited; CPU time 6929.173680
08:17:41 (743226): called boinc_finish(0)

</stderr_txt>
]]>

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