Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
06:52:34 (3467715): wrapper (7.7.26015): starting
06:52:34 (3467715): wrapper: running run_atlas (--nthreads 12)
[2025-10-22 06:52:34] Arguments: --nthreads 12
[2025-10-22 06:52:34] Threads: 12
[2025-10-22 06:52:34] Checking for CVMFS
[2025-10-22 06:52:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 06:52:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 06:52:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 06:52:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 06:52:34] 2.13.2.0 2884831 2280 58520 151994 1 188 4802197 6144000 2751 130560 0 12571028 99.998 82477 259 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-22 06:52:34] CVMFS is ok
[2025-10-22 06:52:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 06:52:34] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-22 06:52:34] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-22 06:52:34] Further information can be found at the LHC@home message board.
[2025-10-22 06:52:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 06:52:34] Checking for apptainer binary...
[2025-10-22 06:52:34] apptainer is not installed, using version from CVMFS
[2025-10-22 06:52:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 06:52:36] XeonFire
[2025-10-22 06:52:36] apptainer works
[2025-10-22 06:52:36] Set ATHENA_PROC_NUMBER=12
[2025-10-22 06:52:36] Set ATHENA_CORE_NUMBER=12
[2025-10-22 06:52:36] Starting ATLAS job with PandaID=6854509747
[2025-10-22 06:52:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 07:31:56]  *** The last 200 lines of the pilot log: ***
[2025-10-22 07:31:56]  status_code=0
[2025-10-22 07:31:56]  storage_token=
[2025-10-22 07:31:56]  surl=/var/lib/boinc-client/slots/4/PanDA_Pilot-6854509747/log.46809188._006124.job.log.tgz.1
[2025-10-22 07:31:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/81/log.46809188._006124.job.log.tgz.1
[2025-10-22 07:31:56]  workdir=None
[2025-10-22 07:31:56] ]
[2025-10-22 07:31:56] 2025-10-22 12:30:56,400 | INFO     | transferring file log.46809188._006124.job.log.tgz.1 from /var/lib/boinc-client/slots/4/PanDA_Pilot-6854509747/log.46809188._006124.job.log.tgz.1 to /var/lib/boinc
[2025-10-22 07:31:56] 2025-10-22 12:30:56,400 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6854509747/log.46809188._006124.job.log.tgz.1 /var/lib/boinc-client/slots/4/log.468091
[2025-10-22 07:31:56] 2025-10-22 12:30:56,418 | INFO     | adding to output.list: log.46809188._006124.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/81/log.46809188._006124.job.log.tg
[2025-10-22 07:31:56] 2025-10-22 12:30:56,419 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-22 07:31:56] 2025-10-22 12:30:56,419 | INFO     | summary of transferred files:
[2025-10-22 07:31:56] 2025-10-22 12:30:56,419 | INFO     |  -- lfn=log.46809188._006124.job.log.tgz.1, status_code=0, status=transferred
[2025-10-22 07:31:56] 2025-10-22 12:30:56,419 | INFO     | stage-out finished correctly
[2025-10-22 07:31:56] 2025-10-22 12:30:56,471 | INFO     | time since job start (2289s) is within the limit (172800.0s)
[2025-10-22 07:31:56] 2025-10-22 12:30:56,899 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-22 07:31:56] 2025-10-22 12:30:56,970 | INFO     | job 6854509747 has state=finished
[2025-10-22 07:31:56] 2025-10-22 12:30:56,971 | INFO     | preparing for final server update for job 6854509747 in state='finished'
[2025-10-22 07:31:56] 2025-10-22 12:30:56,971 | INFO     | this job has now completed (state=finished)
[2025-10-22 07:31:56] 2025-10-22 12:30:56,971 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-22 07:31:56] 2025-10-22 12:30:56,972 | INFO     | log transfer has been attempted: DONE
[2025-10-22 07:31:56] 2025-10-22 12:30:56,972 | INFO     | job 6854509747 has finished - writing final server update
[2025-10-22 07:31:56] 2025-10-22 12:30:56,972 | INFO     | total number of processed events: 400 (read)
[2025-10-22 07:31:56] 2025-10-22 12:30:56,974 | INFO     | executing command: lscpu
[2025-10-22 07:31:56] 2025-10-22 12:30:57,027 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-22 07:31:56] 2025-10-22 12:30:58,104 | WARNING  | process 3478825 can no longer be monitored (due to stat problems) - aborting
[2025-10-22 07:31:56] 2025-10-22 12:30:58,104 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6854509747/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 07:31:56] 2025-10-22 12:30:58,340 | INFO     | number of running child processes to parent process 3478825: 1
[2025-10-22 07:31:56] 2025-10-22 12:30:58,340 | INFO     | maximum number of monitored processes: 6
[2025-10-22 07:31:56] 2025-10-22 12:30:58,476 | INFO     | time since job start (2291s) is within the limit (172800.0s)
[2025-10-22 07:31:56] 2025-10-22 12:31:00,481 | INFO     | time since job start (2293s) is within the limit (172800.0s)
[2025-10-22 07:31:56] 2025-10-22 12:31:00,844 | INFO     | monitor loop #170: job 0:6854509747 is in state 'finished'
[2025-10-22 07:31:56] 2025-10-22 12:31:00,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 07:31:56] 2025-10-22 12:31:02,487 | INFO     | time since job start (2295s) is within the limit (172800.0s)
[2025-10-22 07:31:56] 2025-10-22 12:31:03,058 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-22 07:31:56] 2025-10-22 12:31:03,074 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2076.5162045454545
[2025-10-22 07:31:56] 2025-10-22 12:31:03,090 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6854509747/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 07:31:56] 2025-10-22 12:31:03,091 | INFO     | extracted standard info from prmon json
[2025-10-22 07:31:56] 2025-10-22 12:31:03,091 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 07:31:56] 2025-10-22 12:31:03,091 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 07:31:56] 2025-10-22 12:31:03,091 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 07:31:56] 2025-10-22 12:31:03,092 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 07:31:56] 2025-10-22 12:31:03,093 | INFO     | fitting pss+swap vs Time
[2025-10-22 07:31:56] 2025-10-22 12:31:03,093 | INFO     | sum of square deviations: 9228080.0
[2025-10-22 07:31:56] 2025-10-22 12:31:03,093 | INFO     | sum of deviations: -526471968.0
[2025-10-22 07:31:56] 2025-10-22 12:31:03,094 | INFO     | mean x: 1761135212.0
[2025-10-22 07:31:56] 2025-10-22 12:31:03,094 | INFO     | mean y: 2709466.0967741935
[2025-10-22 07:31:56] 2025-10-22 12:31:03,094 | INFO     | -- intersect: 100477382526.55325
[2025-10-22 07:31:56] 2025-10-22 12:31:03,094 | INFO     | intersect: 100477382526.55325
[2025-10-22 07:31:56] 2025-10-22 12:31:03,094 | INFO     | chi2: 0.005752832087100383
[2025-10-22 07:31:56] 2025-10-22 12:31:03,094 | INFO     | -- intersect: 100477382526.55325
[2025-10-22 07:31:56] 2025-10-22 12:31:03,094 | INFO     | current memory leak: -57.05 B/s (using 31 data points, chi2=0.01)
[2025-10-22 07:31:56] 2025-10-22 12:31:03,095 | INFO     | could have reported an average CPU frequency of 2166 MHz (5 samples)
[2025-10-22 07:31:56] 2025-10-22 12:31:03,095 | INFO     | ..............................
[2025-10-22 07:31:56] 2025-10-22 12:31:03,095 | INFO     | . Timing measurements:
[2025-10-22 07:31:56] 2025-10-22 12:31:03,095 | INFO     | . get job = 0 s
[2025-10-22 07:31:56] 2025-10-22 12:31:03,095 | INFO     | . initial setup = 2 s
[2025-10-22 07:31:56] 2025-10-22 12:31:03,095 | INFO     | . payload setup = 5 s
[2025-10-22 07:31:56] 2025-10-22 12:31:03,096 | INFO     | . stage-in = 0 s
[2025-10-22 07:31:56] 2025-10-22 12:31:03,096 | INFO     | . payload execution = 2263 s
[2025-10-22 07:31:56] 2025-10-22 12:31:03,096 | INFO     | . stage-out = 0 s
[2025-10-22 07:31:56] 2025-10-22 12:31:03,096 | INFO     | . log creation = 0 s
[2025-10-22 07:31:56] 2025-10-22 12:31:03,096 | INFO     | ..............................
[2025-10-22 07:31:56] 2025-10-22 12:31:03,361 | INFO     | 
[2025-10-22 07:31:56] 2025-10-22 12:31:03,361 | INFO     | job summary report
[2025-10-22 07:31:56] 2025-10-22 12:31:03,361 | INFO     | --------------------------------------------------
[2025-10-22 07:31:56] 2025-10-22 12:31:03,361 | INFO     | PanDA job id: 6854509747
[2025-10-22 07:31:56] 2025-10-22 12:31:03,361 | INFO     | task id: 46809188
[2025-10-22 07:31:56] 2025-10-22 12:31:03,361 | INFO     | errors: (none)
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | pilot state: finished 
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | transexitcode: 0
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | exeerrorcode: 0
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | exeerrordiag: 
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | exitcode: 0
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | exitmsg: OK
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | cpuconsumptiontime: 24026 s
[2025-10-22 07:31:56] 2025-10-22 12:31:03,362 | INFO     | nevents: 400
[2025-10-22 07:31:56] 2025-10-22 12:31:03,363 | INFO     | neventsw: 0
[2025-10-22 07:31:56] 2025-10-22 12:31:03,363 | INFO     | pid: 3478825
[2025-10-22 07:31:56] 2025-10-22 12:31:03,363 | INFO     | pgrp: 3478825
[2025-10-22 07:31:56] 2025-10-22 12:31:03,363 | INFO     | corecount: 12
[2025-10-22 07:31:56] 2025-10-22 12:31:03,363 | INFO     | event service: False
[2025-10-22 07:31:56] 2025-10-22 12:31:03,363 | INFO     | sizes: {0: 2348010, 1: 2348873, 5: 2349135, 12: 2349191, 2272: 2374253, 2273: 2383265, 2274: 2383449, 2280: 2383675}
[2025-10-22 07:31:56] 2025-10-22 12:31:03,363 | INFO     | --------------------------------------------------
[2025-10-22 07:31:56] 2025-10-22 12:31:03,363 | INFO     | 
[2025-10-22 07:31:56] 2025-10-22 12:31:03,364 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-10-22 07:31:56] 2025-10-22 12:31:03,388 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,389 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,389 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,389 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,389 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,389 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,390 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,391 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,391 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,391 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 07:31:56] 2025-10-22 12:31:03,391 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,391 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 07:31:56] 2025-10-22 12:31:03,391 | INFO     | job 6854509747 has completed (purged errors)
[2025-10-22 07:31:56] 2025-10-22 12:31:03,391 | INFO     | overall cleanup function is called
[2025-10-22 07:31:56] 2025-10-22 12:31:04,400 | INFO     | --- collectZombieJob: --- 10, [3478825]
[2025-10-22 07:31:56] 2025-10-22 12:31:04,400 | INFO     | zombie collector waiting for pid 3478825
[2025-10-22 07:31:56] 2025-10-22 12:31:04,400 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 07:31:56] 2025-10-22 12:31:04,401 | INFO     | collected zombie processes
[2025-10-22 07:31:56] 2025-10-22 12:31:04,401 | INFO     | will attempt to kill all subprocesses of pid=3478825
[2025-10-22 07:31:56] 2025-10-22 12:31:04,693 | INFO     | process IDs to be killed: [3478825] (in reverse order)
[2025-10-22 07:31:56] 2025-10-22 12:31:04,788 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 07:31:56] 2025-10-22 12:31:04,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 07:31:56] 2025-10-22 12:31:04,799 | INFO     | did not find any defunct processes belonging to 3478825
[2025-10-22 07:31:56] 2025-10-22 12:31:04,809 | INFO     | did not find any defunct processes belonging to 3478825
[2025-10-22 07:31:56] 2025-10-22 12:31:04,809 | INFO     | ready for new job
[2025-10-22 07:31:56] 2025-10-22 12:31:04,809 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 07:31:56] 2025-10-22 12:31:04,811 | INFO     | ***************************************
[2025-10-22 07:31:56] 2025-10-22 12:31:04,812 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 07:31:56] 2025-10-22 12:31:04,812 | INFO     | ***************************************
[2025-10-22 07:31:56] 2025-10-22 12:31:04,812 | INFO     | 
[2025-10-22 07:31:56] 2025-10-22 12:31:04,817 | INFO     | architecture information:
[2025-10-22 07:31:56] 2025-10-22 12:31:04,818 | INFO     | executing command: cat /etc/os-release
[2025-10-22 07:31:56] 2025-10-22 12:31:04,833 | INFO     | cat /etc/os-release:
[2025-10-22 07:31:56] NAME="CentOS Linux"
[2025-10-22 07:31:56] VERSION="7 (Core)"
[2025-10-22 07:31:56] ID="centos"
[2025-10-22 07:31:56] ID_LIKE="rhel fedora"
[2025-10-22 07:31:56] VERSION_ID="7"
[2025-10-22 07:31:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 07:31:56] ANSI_COLOR="0;31"
[2025-10-22 07:31:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 07:31:56] HOME_URL="https://www.centos.org/"
[2025-10-22 07:31:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 07:31:56] 
[2025-10-22 07:31:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 07:31:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 07:31:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 07:31:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 07:31:56] 
[2025-10-22 07:31:56] 2025-10-22 12:31:04,834 | INFO     | ***************************************
[2025-10-22 07:31:56] 2025-10-22 12:31:05,337 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-10-22 07:31:56] 2025-10-22 12:31:05,355 | INFO     | sufficient remaining disk space (1808245194752 B)
[2025-10-22 07:31:56] 2025-10-22 12:31:05,355 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 07:31:56] 2025-10-22 12:31:05,355 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 07:31:56] 2025-10-22 12:31:05,356 | INFO     | update_server=False
[2025-10-22 07:31:56] 2025-10-22 12:31:05,356 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 07:31:56] 2025-10-22 12:31:05,356 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 07:31:56] 2025-10-22 12:31:05,850 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-22 07:31:56] 2025-10-22 12:31:05,850 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-22 07:31:56] 2025-10-22 12:31:05,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 07:31:56] 2025-10-22 12:31:05,851 | INFO     | will abort loop
[2025-10-22 07:31:56] 2025-10-22 12:31:06,066 | INFO     | all job control threads have been joined
[2025-10-22 07:31:56] 2025-10-22 12:31:06,147 | INFO     | all payload control threads have been joined
[2025-10-22 07:31:56] 2025-10-22 12:31:06,157 | INFO     | all data control threads have been joined
[2025-10-22 07:31:56] 2025-10-22 12:31:06,361 | INFO     | [job] retrieve thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:06,388 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:06,661 | INFO     | [payload] failed_post thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:06,856 | INFO     | [job] job monitor thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,071 | INFO     | [job] control thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,152 | INFO     | [payload] control thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,155 | INFO     | [data] copytool_in thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,162 | INFO     | [data] control thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,193 | INFO     | [payload] validate_post thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,362 | INFO     | [data] copytool_out thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,466 | INFO     | [job] validate thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,479 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 07:31:56] 2025-10-22 12:31:07,622 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:07,734 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:08,209 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 07:31:56] 2025-10-22 12:31:09,214 | INFO     | [job] queue monitor thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:11,485 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:16,221 | INFO     | job.realtimelogging is not enabled
[2025-10-22 07:31:56] 2025-10-22 12:31:17,227 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 07:31:56] 2025-10-22 12:31:35,933 | INFO     | PID=3471798 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 07:31:56] 2025-10-22 12:31:35,933 | INFO     | .. there are 4 such processes running
[2025-10-22 07:31:56] 2025-10-22 12:31:35,933 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 07:31:56] 2025-10-22 12:31:35,933 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 07:31:56] 2025-10-22 12:31:35,933 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 07:31:56] 2025-10-22 12:31:50,558 | INFO     | [monitor] cgroup control has ended
[2025-10-22 07:31:56] 2025-10-22 12:31:51,664 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124013433755456)>', '<ExcThread(monitor, started 124013097481984)>']
[2025-10-22 07:31:56] 2025-10-22 12:31:52,013 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 07:31:56] 2025-10-22 12:31:52,013 | INFO     | [monitor] control thread has ended
[2025-10-22 07:31:56] 2025-10-22 12:31:56,669 | INFO     | all workflow threads have been joined
[2025-10-22 07:31:56] 2025-10-22 12:31:56,670 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 07:31:56] 2025-10-22 12:31:56,670 | INFO     | traces error code: 0
[2025-10-22 07:31:56] 2025-10-22 12:31:56,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 07:31:56] 2025-10-22 12:31:56,780 [wrapper] ==== pilot stdout END ====
[2025-10-22 07:31:56] 2025-10-22 12:31:56,784 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 07:31:56] 2025-10-22 12:31:56,787 [wrapper] pilotpid: 3471798
[2025-10-22 07:31:56] 2025-10-22 12:31:56,790 [wrapper] Pilot exit status: 0
[2025-10-22 07:31:56] 2025-10-22 12:31:56,800 [wrapper] pandaids: 6854509747
[2025-10-22 07:31:56] 2025-10-22 12:31:56,857 [wrapper] cleanup supervisor_pilot 3519502 3471799
[2025-10-22 07:31:56] 2025-10-22 12:31:56,860 [wrapper] Test setup, not cleaning
[2025-10-22 07:31:56] 2025-10-22 12:31:56,863 [wrapper] apfmon messages muted
[2025-10-22 07:31:56] 2025-10-22 12:31:56,866 [wrapper] ==== wrapper stdout END ====
[2025-10-22 07:31:56] 2025-10-22 12:31:56,869 [wrapper] ==== wrapper stderr END ====
[2025-10-22 07:31:56]  *** Error codes and diagnostics ***
[2025-10-22 07:31:56]     "exeErrorCode": 0,
[2025-10-22 07:31:56]     "exeErrorDiag": "",
[2025-10-22 07:31:56]     "pilotErrorCode": 0,
[2025-10-22 07:31:56]     "pilotErrorDiag": "",
[2025-10-22 07:31:56]  *** Listing of results directory ***
[2025-10-22 07:31:56] total 326816
[2025-10-22 07:31:56] -rw-r--r-- 1 mark mark    557409 Oct 21 18:28 pilot3.tar.gz
[2025-10-22 07:31:56] -rw-r--r-- 1 mark mark      5112 Oct 21 18:48 queuedata.json
[2025-10-22 07:31:56] -rwx------ 1 mark mark     36292 Oct 21 18:51 runpilot2-wrapper.sh
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark       100 Oct 22 06:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 07:31:56] -rwxr-xr-x 1 mark mark      7986 Oct 22 06:52 run_atlas
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark       105 Oct 22 06:52 job.xml
[2025-10-22 07:31:56] -rw-r--r-- 2 mark mark 187765444 Oct 22 06:52 EVNT.46809186._000235.pool.root.1
[2025-10-22 07:31:56] -rw-r--r-- 2 mark mark     15120 Oct 22 06:52 start_atlas.sh
[2025-10-22 07:31:56] drwxrwx--x 2 mark mark      4096 Oct 22 06:52 shared
[2025-10-22 07:31:56] -rw-r--r-- 2 mark mark    569670 Oct 22 06:52 input.tar.gz
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark      9229 Oct 22 06:52 init_data.xml
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark         0 Oct 22 06:52 boinc_setup_complete
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark         0 Oct 22 06:52 boinc_lockfile
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark      2492 Oct 22 06:52 pandaJob.out
[2025-10-22 07:31:56] -rw------- 1 mark mark    977665 Oct 22 06:52 agis_schedconf.cvmfs.json
[2025-10-22 07:31:56] -rw------- 1 mark mark   1560740 Oct 22 06:52 agis_ddmendpoints.agis.ALL.json
[2025-10-22 07:31:56] drwx------ 5 mark mark      4096 Oct 22 06:52 pilot3
[2025-10-22 07:31:56] -rw------- 1 mark mark 141549547 Oct 22 07:30 HITS.46809188._006124.pool.root.1
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark       529 Oct 22 07:30 boinc_task_state.xml
[2025-10-22 07:31:56] -rw------- 1 mark mark        95 Oct 22 07:30 pilot_heartbeat.json
[2025-10-22 07:31:56] -rw------- 1 mark mark      1033 Oct 22 07:30 memory_monitor_summary.json
[2025-10-22 07:31:56] -rw------- 1 mark mark    351565 Oct 22 07:30 log.46809188._006124.job.log.tgz.1
[2025-10-22 07:31:56] -rw------- 1 mark mark      7782 Oct 22 07:31 heartbeat.json
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark      8192 Oct 22 07:31 boinc_mmap_file
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark        27 Oct 22 07:31 wrapper_checkpoint.txt
[2025-10-22 07:31:56] -rw------- 1 mark mark      5090 Oct 22 07:31 pilotlog.txt
[2025-10-22 07:31:56] -rw------- 1 mark mark    364978 Oct 22 07:31 log.46809188._006124.job.log.1
[2025-10-22 07:31:56] -rw------- 1 mark mark       357 Oct 22 07:31 output.list
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark       620 Oct 22 07:31 runtime_log
[2025-10-22 07:31:56] -rw------- 1 mark mark    737280 Oct 22 07:31 result.tar.gz
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark      8759 Oct 22 07:31 runtime_log.err
[2025-10-22 07:31:56] -rw------- 1 mark mark       645 Oct 22 07:31 RHrNDmzJbV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmu53NDmFwAk6n.diag
[2025-10-22 07:31:56] -rw-rw-r-- 1 mark mark     22199 Oct 22 07:31 stderr.txt
[2025-10-22 07:31:56] HITS file was successfully produced:
[2025-10-22 07:31:56] -rw------- 1 mark mark 141549547 Oct 22 07:30 shared/HITS.pool.root.1
[2025-10-22 07:31:56]  *** Contents of shared directory: ***
[2025-10-22 07:31:56] total 322904
[2025-10-22 07:31:56] -rw-r--r-- 2 mark mark 187765444 Oct 22 06:52 ATLAS.root_0
[2025-10-22 07:31:56] -rw-r--r-- 2 mark mark     15120 Oct 22 06:52 start_atlas.sh
[2025-10-22 07:31:56] -rw-r--r-- 2 mark mark    569670 Oct 22 06:52 input.tar.gz
[2025-10-22 07:31:56] -rw------- 1 mark mark 141549547 Oct 22 07:30 HITS.pool.root.1
[2025-10-22 07:31:56] -rw------- 1 mark mark    737280 Oct 22 07:31 result.tar.gz
07:31:58 (3467715): run_atlas exited; CPU time 24104.275905
07:31:58 (3467715): called boinc_finish(0)

</stderr_txt>
]]>

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