Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:48:59 (1454335): wrapper (7.7.26015): starting
14:48:59 (1454335): wrapper: running run_atlas (--nthreads 3)
[2025-10-22 14:48:59] Arguments: --nthreads 3
[2025-10-22 14:48:59] Threads: 3
[2025-10-22 14:48:59] Checking for CVMFS
[2025-10-22 14:48:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 14:48:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 14:48:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 14:49:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 14:49:00] 2.9.2.0 755344 2353 77896 151995 0 57 32858995 36864001 0 130560 0 1803522 99.990 82965 862 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-22 14:49:00] CVMFS is ok
[2025-10-22 14:49:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 14:49:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 14:49:00] Further information can be found at the LHC@home message board.
[2025-10-22 14:49:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 14:49:00] Checking for apptainer binary...
[2025-10-22 14:49:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 14:49:00] Running /usr/bin/apptainer --version
[2025-10-22 14:49:00] apptainer version 1.4.1-1.1
[2025-10-22 14:49:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 14:49:00] atlasA223
[2025-10-22 14:49:00] apptainer works
[2025-10-22 14:49:00] Set ATHENA_PROC_NUMBER=3
[2025-10-22 14:49:00] Set ATHENA_CORE_NUMBER=3
[2025-10-22 14:49:00] Starting ATLAS job with PandaID=6853166350
[2025-10-22 14:49:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 16:21:18]  *** The last 200 lines of the pilot log: ***
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,498 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 16:21:18] 2025-10-22 14:20:38,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 16:21:18] 2025-10-22 14:20:38,499 | INFO     | job 6853166350 has completed (purged errors)
[2025-10-22 16:21:18] 2025-10-22 14:20:38,499 | INFO     | overall cleanup function is called
[2025-10-22 16:21:18] 2025-10-22 14:20:39,505 | INFO     | --- collectZombieJob: --- 10, [1464489]
[2025-10-22 16:21:18] 2025-10-22 14:20:39,506 | INFO     | zombie collector waiting for pid 1464489
[2025-10-22 16:21:18] 2025-10-22 14:20:39,506 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 16:21:18] 2025-10-22 14:20:39,506 | INFO     | collected zombie processes
[2025-10-22 16:21:18] 2025-10-22 14:20:39,506 | INFO     | will attempt to kill all subprocesses of pid=1464489
[2025-10-22 16:21:18] 2025-10-22 14:20:39,548 | INFO     | process IDs to be killed: [1464489] (in reverse order)
[2025-10-22 16:21:18] 2025-10-22 14:20:39,576 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 16:21:18] 2025-10-22 14:20:39,576 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 16:21:18] 2025-10-22 14:20:39,577 | INFO     | did not find any defunct processes belonging to 1464489
[2025-10-22 16:21:18] 2025-10-22 14:20:39,578 | INFO     | did not find any defunct processes belonging to 1464489
[2025-10-22 16:21:18] 2025-10-22 14:20:39,578 | INFO     | ready for new job
[2025-10-22 16:21:18] 2025-10-22 14:20:39,578 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 16:21:18] 2025-10-22 14:20:39,579 | INFO     | ***************************************
[2025-10-22 16:21:18] 2025-10-22 14:20:39,579 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 16:21:18] 2025-10-22 14:20:39,579 | INFO     | ***************************************
[2025-10-22 16:21:18] 2025-10-22 14:20:39,579 | INFO     | 
[2025-10-22 16:21:18] 2025-10-22 14:20:39,580 | INFO     | architecture information:
[2025-10-22 16:21:18] 2025-10-22 14:20:39,580 | INFO     | executing command: cat /etc/os-release
[2025-10-22 16:21:18] 2025-10-22 14:20:39,589 | INFO     | cat /etc/os-release:
[2025-10-22 16:21:18] NAME="CentOS Linux"
[2025-10-22 16:21:18] VERSION="7 (Core)"
[2025-10-22 16:21:18] ID="centos"
[2025-10-22 16:21:18] ID_LIKE="rhel fedora"
[2025-10-22 16:21:18] VERSION_ID="7"
[2025-10-22 16:21:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 16:21:18] ANSI_COLOR="0;31"
[2025-10-22 16:21:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 16:21:18] HOME_URL="https://www.centos.org/"
[2025-10-22 16:21:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 16:21:18] 
[2025-10-22 16:21:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 16:21:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 16:21:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 16:21:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 16:21:18] 
[2025-10-22 16:21:18] 2025-10-22 14:20:39,590 | INFO     | ***************************************
[2025-10-22 16:21:18] 2025-10-22 14:20:40,093 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-22 16:21:18] 2025-10-22 14:20:40,106 | INFO     | sufficient remaining disk space (371877478400 B)
[2025-10-22 16:21:18] 2025-10-22 14:20:40,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 16:21:18] 2025-10-22 14:20:40,107 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 16:21:18] 2025-10-22 14:20:40,107 | INFO     | update_server=False
[2025-10-22 16:21:18] 2025-10-22 14:20:40,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 16:21:18] 2025-10-22 14:20:40,107 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 16:21:18] 2025-10-22 14:20:40,107 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 16:21:18] 2025-10-22 14:20:40,488 | INFO     | all job control threads have been joined
[2025-10-22 16:21:18] 2025-10-22 14:20:40,570 | INFO     | all payload control threads have been joined
[2025-10-22 16:21:18] 2025-10-22 14:20:40,577 | INFO     | all data control threads have been joined
[2025-10-22 16:21:18] 2025-10-22 14:20:40,892 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 16:21:18] 2025-10-22 14:20:40,892 | INFO     | aborting loop
[2025-10-22 16:21:18] 2025-10-22 14:20:41,112 | INFO     | [job] queue monitor thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:41,113 | INFO     | [job] retrieve thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:41,130 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:41,289 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:41,494 | INFO     | [job] control thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:41,576 | INFO     | [payload] control thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:41,582 | INFO     | [data] control thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:41,808 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:41,898 | INFO     | [job] job monitor thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:42,021 | INFO     | [payload] validate_post thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:42,113 | INFO     | [data] copytool_out thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:42,196 | INFO     | [data] copytool_in thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:42,372 | INFO     | [payload] failed_post thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:42,505 | INFO     | [job] validate thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:42,535 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:20:43,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 16:21:18] 2025-10-22 14:20:47,517 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 16:21:18] 2025-10-22 14:21:09,883 | INFO     | PID=1458050 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 16:21:18] 2025-10-22 14:21:09,883 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 16:21:18] 2025-10-22 14:21:09,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 16:21:18] 2025-10-22 14:21:09,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 16:21:18] 2025-10-22 14:21:13,041 | INFO     | [monitor] cgroup control has ended
[2025-10-22 16:21:18] 2025-10-22 14:21:13,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514178721600)>', '<ExcThread(monitor, started 140513537681152)>']
[2025-10-22 16:21:18] 2025-10-22 14:21:13,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 16:21:18] 2025-10-22 14:21:13,905 | INFO     | [monitor] control thread has ended
[2025-10-22 16:21:18] 2025-10-22 14:21:18,446 | INFO     | all workflow threads have been joined
[2025-10-22 16:21:18] 2025-10-22 14:21:18,446 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 16:21:18] 2025-10-22 14:21:18,446 | INFO     | traces error code: 0
[2025-10-22 16:21:18] 2025-10-22 14:21:18,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 16:21:18] 2025-10-22 14:21:18,498 [wrapper] ==== pilot stdout END ====
[2025-10-22 16:21:18] 2025-10-22 14:21:18,501 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 16:21:18] 2025-10-22 14:21:18,503 [wrapper] pilotpid: 1458050
[2025-10-22 16:21:18] 2025-10-22 14:21:18,506 [wrapper] Pilot exit status: 0
[2025-10-22 16:21:18] 2025-10-22 14:21:18,513 [wrapper] pandaids: 6853166350
[2025-10-22 16:21:18] 2025-10-22 14:21:18,531 [wrapper] cleanup supervisor_pilot 1476471 1458051
[2025-10-22 16:21:18] 2025-10-22 14:21:18,533 [wrapper] Test setup, not cleaning
[2025-10-22 16:21:18] 2025-10-22 14:21:18,536 [wrapper] apfmon messages muted
[2025-10-22 16:21:18] 2025-10-22 14:21:18,538 [wrapper] ==== wrapper stdout END ====
[2025-10-22 16:21:18] 2025-10-22 14:21:18,540 [wrapper] ==== wrapper stderr END ====
[2025-10-22 16:21:18]  *** Error codes and diagnostics ***
[2025-10-22 16:21:18]     "exeErrorCode": 0,
[2025-10-22 16:21:18]     "exeErrorDiag": "",
[2025-10-22 16:21:18]     "pilotErrorCode": 0,
[2025-10-22 16:21:18]     "pilotErrorDiag": "",
[2025-10-22 16:21:18]  *** Listing of results directory ***
[2025-10-22 16:21:18] total 430256
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc    557409 Oct 21 21:32 pilot3.tar.gz
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc      5112 Oct 21 21:53 queuedata.json
[2025-10-22 16:21:18] -rwx------ 1 boinc boinc     36292 Oct 21 21:57 runpilot2-wrapper.sh
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc       100 Oct 22 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 16:21:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 14:48 run_atlas
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc       105 Oct 22 14:48 job.xml
[2025-10-22 16:21:18] -rw-r--r-- 2 boinc boinc 226258855 Oct 22 14:48 EVNT.46771634._002929.pool.root.1
[2025-10-22 16:21:18] -rw-r--r-- 2 boinc boinc    569675 Oct 22 14:48 input.tar.gz
[2025-10-22 16:21:18] -rw-r--r-- 2 boinc boinc     15120 Oct 22 14:48 start_atlas.sh
[2025-10-22 16:21:18] drwxrwx--x 2 boinc boinc      4096 Oct 22 14:48 shared
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc         0 Oct 22 14:48 boinc_setup_complete
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc      6448 Oct 22 14:48 init_data.xml
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc         0 Oct 22 14:48 boinc_lockfile
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc      2560 Oct 22 14:49 pandaJob.out
[2025-10-22 16:21:18] -rw------- 1 boinc boinc    977591 Oct 22 14:49 agis_schedconf.cvmfs.json
[2025-10-22 16:21:18] -rw------- 1 boinc boinc   1560740 Oct 22 14:49 agis_ddmendpoints.agis.ALL.json
[2025-10-22 16:21:18] drwx------ 5 boinc boinc      4096 Oct 22 14:49 pilot3
[2025-10-22 16:21:18] -rw------- 1 boinc boinc 208311229 Oct 22 16:20 HITS.46771637._073668.pool.root.1
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc       529 Oct 22 16:20 boinc_task_state.xml
[2025-10-22 16:21:18] -rw------- 1 boinc boinc      1014 Oct 22 16:20 memory_monitor_summary.json
[2025-10-22 16:21:18] -rw------- 1 boinc boinc    258408 Oct 22 16:20 log.46771637._073668.job.log.tgz.1
[2025-10-22 16:21:18] -rw------- 1 boinc boinc        95 Oct 22 16:20 pilot_heartbeat.json
[2025-10-22 16:21:18] -rw------- 1 boinc boinc      7756 Oct 22 16:20 heartbeat.json
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc      8192 Oct 22 16:21 boinc_mmap_file
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc        27 Oct 22 16:21 wrapper_checkpoint.txt
[2025-10-22 16:21:18] -rw------- 1 boinc boinc      4752 Oct 22 16:21 pilotlog.txt
[2025-10-22 16:21:18] -rw------- 1 boinc boinc    801597 Oct 22 16:21 log.46771637._073668.job.log.1
[2025-10-22 16:21:18] -rw------- 1 boinc boinc       357 Oct 22 16:21 output.list
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc       620 Oct 22 16:21 runtime_log
[2025-10-22 16:21:18] -rw------- 1 boinc boinc   1075200 Oct 22 16:21 result.tar.gz
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc      8792 Oct 22 16:21 runtime_log.err
[2025-10-22 16:21:18] -rw------- 1 boinc boinc       661 Oct 22 16:21 9pMMDmdfXV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsW3NDmXznOUn.diag
[2025-10-22 16:21:18] -rw-r--r-- 1 boinc boinc     12247 Oct 22 16:21 stderr.txt
[2025-10-22 16:21:18] HITS file was successfully produced:
[2025-10-22 16:21:18] -rw------- 1 boinc boinc 208311229 Oct 22 16:20 shared/HITS.pool.root.1
[2025-10-22 16:21:18]  *** Contents of shared directory: ***
[2025-10-22 16:21:18] total 426024
[2025-10-22 16:21:18] -rw-r--r-- 2 boinc boinc 226258855 Oct 22 14:48 ATLAS.root_0
[2025-10-22 16:21:18] -rw-r--r-- 2 boinc boinc    569675 Oct 22 14:48 input.tar.gz
[2025-10-22 16:21:18] -rw-r--r-- 2 boinc boinc     15120 Oct 22 14:48 start_atlas.sh
[2025-10-22 16:21:18] -rw------- 1 boinc boinc 208311229 Oct 22 16:20 HITS.pool.root.1
[2025-10-22 16:21:18] -rw------- 1 boinc boinc   1075200 Oct 22 16:21 result.tar.gz
16:21:20 (1454335): run_atlas exited; CPU time 15817.982732
16:21:20 (1454335): called boinc_finish(0)

</stderr_txt>
]]>

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