Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:06:26 (2825245): wrapper (7.7.26015): starting
23:06:26 (2825245): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 23:06:26] Arguments: --nthreads 8
[2025-10-21 23:06:26] Threads: 8
[2025-10-21 23:06:26] Checking for CVMFS
[2025-10-21 23:06:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 23:06:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 23:06:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 23:06:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 23:06:30] 2.13.2.0 1061588 36469 435748 151979 3 325 28949960 40960001 26016 16776704 0 140386105 99.807 70822433 14958 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-21 23:06:30] CVMFS is ok
[2025-10-21 23:06:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 23:06:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 23:06:30] Further information can be found at the LHC@home message board.
[2025-10-21 23:06:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 23:06:30] Checking for apptainer binary...
[2025-10-21 23:06:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 23:06:30] Running /usr/bin/apptainer --version
[2025-10-21 23:06:31] apptainer version 1.4.3-1.el9
[2025-10-21 23:06:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 23:06:32] c-1-1.aglt2.org
[2025-10-21 23:06:32] apptainer works
[2025-10-21 23:06:32] Set ATHENA_PROC_NUMBER=8
[2025-10-21 23:06:32] Set ATHENA_CORE_NUMBER=8
[2025-10-21 23:06:33] Starting ATLAS job with PandaID=6853166273
[2025-10-21 23:06:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:20:06 (2825245): BOINC client no longer exists - exiting
03:20:06 (2825245): timer handler: client dead, exiting
03:36:25 (3989594): wrapper (7.7.26015): starting
03:36:25 (3989594): wrapper: running run_atlas (--nthreads 11)
[2025-10-22 03:36:25] Arguments: --nthreads 11
[2025-10-22 03:36:25] Threads: 11
[2025-10-22 03:36:25] This job has been restarted, cleaning up previous attempt
[2025-10-22 03:36:25] Checking for CVMFS
[2025-10-22 03:36:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 03:36:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 03:36:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 03:36:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 03:36:26] 2.13.2.0 1061588 36739 441956 151985 2 546 30437327 40960001 31498 16776704 0 141740398 99.808 71351338 14956 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-22 03:36:26] CVMFS is ok
[2025-10-22 03:36:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 03:36:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 03:36:26] Further information can be found at the LHC@home message board.
[2025-10-22 03:36:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 03:36:26] Checking for apptainer binary...
[2025-10-22 03:36:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 03:36:26] Running /usr/bin/apptainer --version
[2025-10-22 03:36:27] apptainer version 1.4.3-1.el9
[2025-10-22 03:36:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 03:36:27] c-1-1.aglt2.org
[2025-10-22 03:36:27] apptainer works
[2025-10-22 03:36:27] Set ATHENA_PROC_NUMBER=11
[2025-10-22 03:36:27] Set ATHENA_CORE_NUMBER=11
[2025-10-22 03:36:27] Starting ATLAS job with PandaID=6853166273
[2025-10-22 03:36:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 08:39:45]  *** The last 200 lines of the pilot log: ***
[2025-10-22 08:39:45] 2025-10-22 12:39:03,729 | INFO     | monitor loop #873: job 0:6853166273 is in state 'finished'
[2025-10-22 08:39:45] 2025-10-22 12:39:03,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 08:39:45] 2025-10-22 12:39:03,778 | INFO     | time since job start (18117s) is within the limit (172800.0s)
[2025-10-22 08:39:45] 2025-10-22 12:39:03,862 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-22 08:39:45] 2025-10-22 12:39:03,906 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 1540.2031000000002
[2025-10-22 08:39:45] 2025-10-22 12:39:04,028 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6853166273/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,029 | INFO     | extracted standard info from prmon json
[2025-10-22 08:39:45] 2025-10-22 12:39:04,029 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 08:39:45] 2025-10-22 12:39:04,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 08:39:45] 2025-10-22 12:39:04,030 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 08:39:45] 2025-10-22 12:39:04,030 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 08:39:45] 2025-10-22 12:39:04,044 | INFO     | fitting pss+swap vs Time
[2025-10-22 08:39:45] 2025-10-22 12:39:04,045 | INFO     | sum of square deviations: 7960139861.545741
[2025-10-22 08:39:45] 2025-10-22 12:39:04,061 | INFO     | sum of deviations: 100477208565.81694
[2025-10-22 08:39:45] 2025-10-22 12:39:04,061 | INFO     | mean x: 1761127691.4135594
[2025-10-22 08:39:45] 2025-10-22 12:39:04,061 | INFO     | mean y: 2593144.345762712
[2025-10-22 08:39:45] 2025-10-22 12:39:04,061 | INFO     | -- intersect: -22227317063.140743
[2025-10-22 08:39:45] 2025-10-22 12:39:04,062 | INFO     | intersect: -22227317063.140743
[2025-10-22 08:39:45] 2025-10-22 12:39:04,062 | INFO     | chi2: 3.128671206386654
[2025-10-22 08:39:45] 2025-10-22 12:39:04,063 | INFO     | sum of square deviations: 7562225423.175851
[2025-10-22 08:39:45] 2025-10-22 12:39:04,068 | INFO     | sum of deviations: 117785779459.2034
[2025-10-22 08:39:45] 2025-10-22 12:39:04,068 | INFO     | mean x: 1761127538.9206896
[2025-10-22 08:39:45] 2025-10-22 12:39:04,068 | INFO     | mean y: 2599673.1827586205
[2025-10-22 08:39:45] 2025-10-22 12:39:04,069 | INFO     | -- intersect: -27427920880.08141
[2025-10-22 08:39:45] 2025-10-22 12:39:04,069 | INFO     | intersect: -27427920880.08141
[2025-10-22 08:39:45] 2025-10-22 12:39:04,070 | INFO     | chi2: 2.4269647978419484
[2025-10-22 08:39:45] 2025-10-22 12:39:04,070 | INFO     | current chi2=2.4269647978419484 (change=22.42825667050889 %)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,070 | INFO     | right removable region: 289
[2025-10-22 08:39:45] 2025-10-22 12:39:04,071 | INFO     | sum of square deviations: 7562151003.175851
[2025-10-22 08:39:45] 2025-10-22 12:39:04,075 | INFO     | sum of deviations: 31454308170.21032
[2025-10-22 08:39:45] 2025-10-22 12:39:04,076 | INFO     | mean x: 1761127843.9206896
[2025-10-22 08:39:45] 2025-10-22 12:39:04,076 | INFO     | mean y: 2619483.748275862
[2025-10-22 08:39:45] 2025-10-22 12:39:04,076 | INFO     | -- intersect: -7322684904.719418
[2025-10-22 08:39:45] 2025-10-22 12:39:04,076 | INFO     | intersect: -7322684904.719418
[2025-10-22 08:39:45] 2025-10-22 12:39:04,077 | INFO     | chi2: 1.0052741714230287
[2025-10-22 08:39:45] 2025-10-22 12:39:04,077 | INFO     | current chi2=1.0052741714230287 (change=67.86897359585338 %)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,078 | INFO     | sum of square deviations: 7177650769.775382
[2025-10-22 08:39:45] 2025-10-22 12:39:04,083 | INFO     | sum of deviations: 9852843724.14035
[2025-10-22 08:39:45] 2025-10-22 12:39:04,083 | INFO     | mean x: 1761127996.42807
[2025-10-22 08:39:45] 2025-10-22 12:39:04,083 | INFO     | mean y: 2628033.98245614
[2025-10-22 08:39:45] 2025-10-22 12:39:04,083 | INFO     | -- intersect: -2414892612.1992745
[2025-10-22 08:39:45] 2025-10-22 12:39:04,084 | INFO     | intersect: -2414892612.1992745
[2025-10-22 08:39:45] 2025-10-22 12:39:04,084 | INFO     | chi2: 0.8385465004697452
[2025-10-22 08:39:45] 2025-10-22 12:39:04,085 | INFO     | current chi2=0.8385465004697452 (change=16.585293414757686 %)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,085 | INFO     | left removable region: 20
[2025-10-22 08:39:45] 2025-10-22 12:39:04,086 | INFO     | sum of square deviations: 6035340732.237938
[2025-10-22 08:39:45] 2025-10-22 12:39:04,090 | INFO     | sum of deviations: 9530764470.464684
[2025-10-22 08:39:45] 2025-10-22 12:39:04,090 | INFO     | mean x: 1761128118.4386618
[2025-10-22 08:39:45] 2025-10-22 12:39:04,090 | INFO     | mean y: 2643214.5130111524
[2025-10-22 08:39:45] 2025-10-22 12:39:04,091 | INFO     | -- intersect: -2778458639.354912
[2025-10-22 08:39:45] 2025-10-22 12:39:04,091 | INFO     | intersect: -2778458639.354912
[2025-10-22 08:39:45] 2025-10-22 12:39:04,092 | INFO     | chi2: 0.007389164549273857
[2025-10-22 08:39:45] 2025-10-22 12:39:04,092 | INFO     | -- intersect: -2778458639.354912
[2025-10-22 08:39:45] 2025-10-22 12:39:04,092 | INFO     | current memory leak: 1.58 B/s (using 269 data points, chi2=0.01)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,093 | INFO     | could have reported an average CPU frequency of 1517 MHz (13 samples)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,093 | INFO     | ..............................
[2025-10-22 08:39:45] 2025-10-22 12:39:04,094 | INFO     | . Timing measurements:
[2025-10-22 08:39:45] 2025-10-22 12:39:04,094 | INFO     | . get job = 0 s
[2025-10-22 08:39:45] 2025-10-22 12:39:04,094 | INFO     | . initial setup = 5 s
[2025-10-22 08:39:45] 2025-10-22 12:39:04,094 | INFO     | . payload setup = 26 s
[2025-10-22 08:39:45] 2025-10-22 12:39:04,094 | INFO     | . stage-in = 0 s
[2025-10-22 08:39:45] 2025-10-22 12:39:04,094 | INFO     | . payload execution = 18017 s
[2025-10-22 08:39:45] 2025-10-22 12:39:04,094 | INFO     | . stage-out = 5 s
[2025-10-22 08:39:45] 2025-10-22 12:39:04,095 | INFO     | . log creation = 0 s
[2025-10-22 08:39:45] 2025-10-22 12:39:04,095 | INFO     | ..............................
[2025-10-22 08:39:45] 2025-10-22 12:39:04,513 | INFO     | 
[2025-10-22 08:39:45] 2025-10-22 12:39:04,513 | INFO     | job summary report
[2025-10-22 08:39:45] 2025-10-22 12:39:04,513 | INFO     | --------------------------------------------------
[2025-10-22 08:39:45] 2025-10-22 12:39:04,513 | INFO     | PanDA job id: 6853166273
[2025-10-22 08:39:45] 2025-10-22 12:39:04,514 | INFO     | task id: 46771637
[2025-10-22 08:39:45] 2025-10-22 12:39:04,514 | INFO     | errors: (none)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,514 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 08:39:45] 2025-10-22 12:39:04,514 | INFO     | pilot state: finished 
[2025-10-22 08:39:45] 2025-10-22 12:39:04,514 | INFO     | transexitcode: 0
[2025-10-22 08:39:45] 2025-10-22 12:39:04,514 | INFO     | exeerrorcode: 0
[2025-10-22 08:39:45] 2025-10-22 12:39:04,514 | INFO     | exeerrordiag: 
[2025-10-22 08:39:45] 2025-10-22 12:39:04,514 | INFO     | exitcode: 0
[2025-10-22 08:39:45] 2025-10-22 12:39:04,515 | INFO     | exitmsg: OK
[2025-10-22 08:39:45] 2025-10-22 12:39:04,515 | INFO     | cpuconsumptiontime: 76155 s
[2025-10-22 08:39:45] 2025-10-22 12:39:04,515 | INFO     | nevents: 400
[2025-10-22 08:39:45] 2025-10-22 12:39:04,515 | INFO     | neventsw: 0
[2025-10-22 08:39:45] 2025-10-22 12:39:04,515 | INFO     | pid: 4032422
[2025-10-22 08:39:45] 2025-10-22 12:39:04,515 | INFO     | pgrp: 4032422
[2025-10-22 08:39:45] 2025-10-22 12:39:04,515 | INFO     | corecount: 11
[2025-10-22 08:39:45] 2025-10-22 12:39:04,515 | INFO     | event service: False
[2025-10-22 08:39:45] 2025-10-22 12:39:04,516 | INFO     | sizes: {0: 2348104, 1: 2348789, 2: 2348988, 3: 2348988, 14: 2349016, 21: 2349306, 26: 2349462, 18049: 2381395, 18054: 2390393, 18056: 2390449, 18075: 2390643}
[2025-10-22 08:39:45] 2025-10-22 12:39:04,516 | INFO     | --------------------------------------------------
[2025-10-22 08:39:45] 2025-10-22 12:39:04,516 | INFO     | 
[2025-10-22 08:39:45] 2025-10-22 12:39:04,516 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-22 08:39:45] 2025-10-22 12:39:04,634 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,635 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,635 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,635 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,635 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,635 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,635 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,636 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,636 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,649 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,650 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,650 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 08:39:45] 2025-10-22 12:39:04,651 | INFO     | job 6853166273 has completed (purged errors)
[2025-10-22 08:39:45] 2025-10-22 12:39:04,651 | INFO     | overall cleanup function is called
[2025-10-22 08:39:45] 2025-10-22 12:39:05,661 | INFO     | --- collectZombieJob: --- 10, [4032422]
[2025-10-22 08:39:45] 2025-10-22 12:39:05,661 | INFO     | zombie collector waiting for pid 4032422
[2025-10-22 08:39:45] 2025-10-22 12:39:05,661 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 08:39:45] 2025-10-22 12:39:05,661 | INFO     | collected zombie processes
[2025-10-22 08:39:45] 2025-10-22 12:39:05,662 | INFO     | will attempt to kill all subprocesses of pid=4032422
[2025-10-22 08:39:45] 2025-10-22 12:39:06,581 | INFO     | process IDs to be killed: [4032422] (in reverse order)
[2025-10-22 08:39:45] 2025-10-22 12:39:07,007 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 08:39:45] 2025-10-22 12:39:07,008 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 08:39:45] 2025-10-22 12:39:07,109 | INFO     | did not find any defunct processes belonging to 4032422
[2025-10-22 08:39:45] 2025-10-22 12:39:07,137 | INFO     | did not find any defunct processes belonging to 4032422
[2025-10-22 08:39:45] 2025-10-22 12:39:07,137 | INFO     | ready for new job
[2025-10-22 08:39:45] 2025-10-22 12:39:07,138 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 08:39:45] 2025-10-22 12:39:07,141 | INFO     | ***************************************
[2025-10-22 08:39:45] 2025-10-22 12:39:07,143 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 08:39:45] 2025-10-22 12:39:07,143 | INFO     | ***************************************
[2025-10-22 08:39:45] 2025-10-22 12:39:07,143 | INFO     | 
[2025-10-22 08:39:45] 2025-10-22 12:39:07,149 | INFO     | architecture information:
[2025-10-22 08:39:45] 2025-10-22 12:39:07,150 | INFO     | executing command: cat /etc/os-release
[2025-10-22 08:39:45] 2025-10-22 12:39:07,185 | INFO     | cat /etc/os-release:
[2025-10-22 08:39:45] NAME="CentOS Linux"
[2025-10-22 08:39:45] VERSION="7 (Core)"
[2025-10-22 08:39:45] ID="centos"
[2025-10-22 08:39:45] ID_LIKE="rhel fedora"
[2025-10-22 08:39:45] VERSION_ID="7"
[2025-10-22 08:39:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 08:39:45] ANSI_COLOR="0;31"
[2025-10-22 08:39:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 08:39:45] HOME_URL="https://www.centos.org/"
[2025-10-22 08:39:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 08:39:45] 
[2025-10-22 08:39:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 08:39:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 08:39:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 08:39:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 08:39:45] 
[2025-10-22 08:39:45] 2025-10-22 12:39:07,186 | INFO     | ***************************************
[2025-10-22 08:39:45] 2025-10-22 12:39:07,689 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-22 08:39:45] 2025-10-22 12:39:07,778 | INFO     | sufficient remaining disk space (104339603456 B)
[2025-10-22 08:39:45] 2025-10-22 12:39:07,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 08:39:45] 2025-10-22 12:39:07,779 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 08:39:45] 2025-10-22 12:39:07,779 | INFO     | update_server=False
[2025-10-22 08:39:45] 2025-10-22 12:39:07,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 08:39:45] 2025-10-22 12:39:07,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 08:39:45] 2025-10-22 12:39:07,780 | INFO     | aborting loop
[2025-10-22 08:39:45] 2025-10-22 12:39:08,494 | INFO     | all data control threads have been joined
[2025-10-22 08:39:45] 2025-10-22 12:39:08,787 | INFO     | [job] retrieve thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:08,788 | INFO     | [job] job monitor thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:08,828 | INFO     | [job] validate thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:08,934 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 08:39:45] 2025-10-22 12:39:09,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 08:39:45] 2025-10-22 12:39:09,112 | INFO     | all payload control threads have been joined
[2025-10-22 08:39:45] 2025-10-22 12:39:09,188 | INFO     | all job control threads have been joined
[2025-10-22 08:39:45] 2025-10-22 12:39:09,265 | INFO     | [payload] failed_post thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:09,460 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 08:39:45] 2025-10-22 12:39:09,477 | INFO     | [payload] validate_post thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:09,500 | INFO     | [data] control thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:09,795 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:10,118 | INFO     | [payload] control thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:10,126 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:10,190 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:10,191 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:10,194 | INFO     | [job] control thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:10,281 | INFO     | [data] copytool_in thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:10,467 | INFO     | [job] queue monitor thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:11,058 | INFO     | [data] copytool_out thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:12,951 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 08:39:45] 2025-10-22 12:39:38,524 | INFO     | PID=4003638 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 08:39:45] 2025-10-22 12:39:38,528 | INFO     | .. there are 42 such processes running
[2025-10-22 08:39:45] 2025-10-22 12:39:38,528 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 08:39:45] 2025-10-22 12:39:38,529 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 08:39:45] 2025-10-22 12:39:38,529 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 08:39:45] 2025-10-22 12:39:39,091 | INFO     | [monitor] cgroup control has ended
[2025-10-22 08:39:45] 2025-10-22 12:39:39,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140093758089024)>', '<ExcThread(monitor, started 140093411014400)>']
[2025-10-22 08:39:45] 2025-10-22 12:39:39,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 08:39:45] 2025-10-22 12:39:39,535 | INFO     | [monitor] control thread has ended
[2025-10-22 08:39:45] 2025-10-22 12:39:44,311 | INFO     | all workflow threads have been joined
[2025-10-22 08:39:45] 2025-10-22 12:39:44,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 08:39:45] 2025-10-22 12:39:44,312 | INFO     | traces error code: 0
[2025-10-22 08:39:45] 2025-10-22 12:39:44,312 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 08:39:45] 2025-10-22 12:39:44,628 [wrapper] ==== pilot stdout END ====
[2025-10-22 08:39:45] 2025-10-22 12:39:44,711 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 08:39:45] 2025-10-22 12:39:44,769 [wrapper] pilotpid: 4003638
[2025-10-22 08:39:45] 2025-10-22 12:39:44,773 [wrapper] Pilot exit status: 0
[2025-10-22 08:39:45] 2025-10-22 12:39:44,950 [wrapper] pandaids: 6853166273 6853166273
[2025-10-22 08:39:45] 2025-10-22 12:39:45,109 [wrapper] cleanup supervisor_pilot  749160 4003642
[2025-10-22 08:39:45] 2025-10-22 12:39:45,114 [wrapper] Test setup, not cleaning
[2025-10-22 08:39:45] 2025-10-22 12:39:45,118 [wrapper] apfmon messages muted
[2025-10-22 08:39:45] 2025-10-22 12:39:45,122 [wrapper] ==== wrapper stdout END ====
[2025-10-22 08:39:45] 2025-10-22 12:39:45,127 [wrapper] ==== wrapper stderr END ====
[2025-10-22 08:39:45]  *** Error codes and diagnostics ***
[2025-10-22 08:39:45]     "exeErrorCode": 0,
[2025-10-22 08:39:45]     "exeErrorDiag": "",
[2025-10-22 08:39:45]     "pilotErrorCode": 0,
[2025-10-22 08:39:45]     "pilotErrorDiag": "",
[2025-10-22 08:39:45]  *** Listing of results directory ***
[2025-10-22 08:39:45] total 649132
[2025-10-22 08:39:45] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas    557409 Oct 21 15:32 pilot3.tar.gz
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas      5112 Oct 21 15:48 queuedata.json
[2025-10-22 08:39:45] -rwx------. 1 boincer umatlas     36292 Oct 21 15:48 runpilot2-wrapper.sh
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas       100 Oct 21 23:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 08:39:45] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 21 23:06 run_atlas
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas       105 Oct 21 23:06 job.xml
[2025-10-22 08:39:45] -rw-r--r--. 3 boincer umatlas 226366051 Oct 21 23:06 EVNT.46771634._002926.pool.root.1
[2025-10-22 08:39:45] -rw-r--r--. 3 boincer umatlas 226366051 Oct 21 23:06 ATLAS.root_0
[2025-10-22 08:39:45] -rw-r--r--. 2 boincer umatlas     15120 Oct 21 23:06 start_atlas.sh
[2025-10-22 08:39:45] drwxrwx--x. 2 boincer umatlas      4096 Oct 21 23:06 shared
[2025-10-22 08:39:45] -rw-r--r--. 2 boincer umatlas    569688 Oct 21 23:06 input.tar.gz
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas         0 Oct 21 23:06 boinc_lockfile
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas      2561 Oct 22 03:36 pandaJob.out
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas    978464 Oct 22 03:37 agis_schedconf.cvmfs.json
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas 203055579 Oct 22 08:37 HITS.46771637._073591.pool.root.1
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas       532 Oct 22 08:37 boinc_task_state.xml
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas      1043 Oct 22 08:38 memory_monitor_summary.json
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas   1560740 Oct 22 08:38 agis_ddmendpoints.agis.ALL.json
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas    527579 Oct 22 08:38 log.46771637._073591.job.log.tgz.1
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas      6841 Oct 22 08:38 init_data.xml
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas      7820 Oct 22 08:39 heartbeat.json
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas        97 Oct 22 08:39 pilot_heartbeat.json
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas      4825 Oct 22 08:39 pilotlog.txt
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas   1978099 Oct 22 08:39 log.46771637._073591.job.log.1
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas        29 Oct 22 08:39 wrapper_checkpoint.txt
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas       357 Oct 22 08:39 output.list
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas      8192 Oct 22 08:39 boinc_mmap_file
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas       620 Oct 22 08:39 runtime_log
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas   2529280 Oct 22 08:39 result.tar.gz
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas      8776 Oct 22 08:39 runtime_log.err
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas       780 Oct 22 08:39 0BRLDmpWXV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKDgMDmncyp3n.diag
[2025-10-22 08:39:45] -rw-r--r--. 1 boincer umatlas     23532 Oct 22 08:39 stderr.txt
[2025-10-22 08:39:45] HITS file was successfully produced:
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas 203055579 Oct 22 08:37 shared/HITS.pool.root.1
[2025-10-22 08:39:45]  *** Contents of shared directory: ***
[2025-10-22 08:39:45] total 422416
[2025-10-22 08:39:45] -rw-r--r--. 3 boincer umatlas 226366051 Oct 21 23:06 ATLAS.root_0
[2025-10-22 08:39:45] -rw-r--r--. 2 boincer umatlas     15120 Oct 21 23:06 start_atlas.sh
[2025-10-22 08:39:45] -rw-r--r--. 2 boincer umatlas    569688 Oct 21 23:06 input.tar.gz
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas 203055579 Oct 22 08:37 HITS.pool.root.1
[2025-10-22 08:39:45] -rw-------. 1 boincer umatlas   2529280 Oct 22 08:39 result.tar.gz
08:39:47 (3989594): run_atlas exited; CPU time 77379.360740
08:39:47 (3989594): called boinc_finish(0)

</stderr_txt>
]]>

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