Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:15:38 (28780): wrapper (7.7.26015): starting
14:15:38 (28780): wrapper: running run_atlas (--nthreads 8)
[2025-10-22 14:15:38] Arguments: --nthreads 8
[2025-10-22 14:15:38] Threads: 8
[2025-10-22 14:15:38] Checking for CVMFS
[2025-10-22 14:15:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 14:15:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 14:15:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 14:15:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 14:15:41] 2.11.2.0 20954 234937 144572 151995 3 14 16112647 25165825 4632 130560 0 111616087 99.885 65949712 3236 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-22 14:15:41] CVMFS is ok
[2025-10-22 14:15:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 14:15:41] Checking for apptainer binary...
[2025-10-22 14:15:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 14:15:41] Running /usr/bin/apptainer --version
[2025-10-22 14:15:41] apptainer version 1.3.2-1.el7
[2025-10-22 14:15:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 14:15:54] cg-vwn319.simple-grid.lan
[2025-10-22 14:15:54] apptainer works
[2025-10-22 14:15:54] Set ATHENA_PROC_NUMBER=8
[2025-10-22 14:15:54] Set ATHENA_CORE_NUMBER=8
[2025-10-22 14:15:54] Starting ATLAS job with PandaID=6853142926
[2025-10-22 14:15:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 19:13:13]  *** The last 200 lines of the pilot log: ***
[2025-10-22 19:13:13] 2025-10-22 17:12:21,971 | INFO     | mean x: 1761144559.5
[2025-10-22 19:13:13] 2025-10-22 17:12:21,971 | INFO     | mean y: 2490519.3285714285
[2025-10-22 19:13:13] 2025-10-22 17:12:21,971 | INFO     | -- intersect: -19852203309.460033
[2025-10-22 19:13:13] 2025-10-22 17:12:21,971 | INFO     | intersect: -19852203309.460033
[2025-10-22 19:13:13] 2025-10-22 17:12:21,972 | INFO     | chi2: 5.314025865289412
[2025-10-22 19:13:13] 2025-10-22 17:12:21,972 | INFO     | sum of square deviations: 6448679050.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,975 | INFO     | sum of deviations: 75298483753.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,975 | INFO     | mean x: 1761144407.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,976 | INFO     | mean y: 2489906.28
[2025-10-22 19:13:13] 2025-10-22 17:12:21,976 | INFO     | -- intersect: -20561644622.507927
[2025-10-22 19:13:13] 2025-10-22 17:12:21,976 | INFO     | intersect: -20561644622.507927
[2025-10-22 19:13:13] 2025-10-22 17:12:21,976 | INFO     | chi2: 5.319657271003424
[2025-10-22 19:13:13] 2025-10-22 17:12:21,976 | INFO     | current chi2=5.319657271003424 (change=-0.105972493487387 %)
[2025-10-22 19:13:13] 2025-10-22 17:12:21,977 | INFO     | right removable region: 274
[2025-10-22 19:13:13] 2025-10-22 17:12:21,977 | INFO     | sum of square deviations: 6448679050.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,979 | INFO     | sum of deviations: -17185494925.000004
[2025-10-22 19:13:13] 2025-10-22 17:12:21,980 | INFO     | mean x: 1761144712.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,980 | INFO     | mean y: 2530470.578181818
[2025-10-22 19:13:13] 2025-10-22 17:12:21,980 | INFO     | -- intersect: 4695917019.295721
[2025-10-22 19:13:13] 2025-10-22 17:12:21,980 | INFO     | intersect: 4695917019.295721
[2025-10-22 19:13:13] 2025-10-22 17:12:21,980 | INFO     | chi2: 1.0088773324749674
[2025-10-22 19:13:13] 2025-10-22 17:12:21,981 | INFO     | current chi2=1.0088773324749674 (change=81.01482081476429 %)
[2025-10-22 19:13:13] 2025-10-22 17:12:21,981 | INFO     | sum of square deviations: 6103286527.5
[2025-10-22 19:13:13] 2025-10-22 17:12:21,984 | INFO     | sum of deviations: -49848087085.5
[2025-10-22 19:13:13] 2025-10-22 17:12:21,984 | INFO     | mean x: 1761144864.5
[2025-10-22 19:13:13] 2025-10-22 17:12:21,984 | INFO     | mean y: 2544790.1074074074
[2025-10-22 19:13:13] 2025-10-22 17:12:21,984 | INFO     | -- intersect: 14386549568.552097
[2025-10-22 19:13:13] 2025-10-22 17:12:21,984 | INFO     | intersect: 14386549568.552097
[2025-10-22 19:13:13] 2025-10-22 17:12:21,984 | INFO     | chi2: 0.24097525668410416
[2025-10-22 19:13:13] 2025-10-22 17:12:21,985 | INFO     | current chi2=0.24097525668410416 (change=76.11451373449475 %)
[2025-10-22 19:13:13] 2025-10-22 17:12:21,985 | INFO     | sum of square deviations: 5770452380.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,988 | INFO     | sum of deviations: -50837426413.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,988 | INFO     | mean x: 1761145017.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,988 | INFO     | mean y: 2545221.1056603775
[2025-10-22 19:13:13] 2025-10-22 17:12:21,988 | INFO     | -- intersect: 15518153757.218237
[2025-10-22 19:13:13] 2025-10-22 17:12:21,988 | INFO     | intersect: 15518153757.218237
[2025-10-22 19:13:13] 2025-10-22 17:12:21,989 | INFO     | chi2: 0.22237795329783958
[2025-10-22 19:13:13] 2025-10-22 17:12:21,989 | INFO     | current chi2=0.22237795329783958 (change=7.7175157491973945 %)
[2025-10-22 19:13:13] 2025-10-22 17:12:21,989 | INFO     | left removable region: 30
[2025-10-22 19:13:13] 2025-10-22 17:12:21,989 | INFO     | sum of square deviations: 4504437945.0
[2025-10-22 19:13:13] 2025-10-22 17:12:21,991 | INFO     | sum of deviations: -24867353025.000015
[2025-10-22 19:13:13] 2025-10-22 17:12:21,992 | INFO     | mean x: 1761145291.5
[2025-10-22 19:13:13] 2025-10-22 17:12:21,992 | INFO     | mean y: 2532740.8032786883
[2025-10-22 19:13:13] 2025-10-22 17:12:21,992 | INFO     | -- intersect: 9725171220.18565
[2025-10-22 19:13:13] 2025-10-22 17:12:21,992 | INFO     | intersect: 9725171220.18565
[2025-10-22 19:13:13] 2025-10-22 17:12:21,992 | INFO     | chi2: 0.16506414524136215
[2025-10-22 19:13:13] 2025-10-22 17:12:21,992 | INFO     | -- intersect: 9725171220.18565
[2025-10-22 19:13:13] 2025-10-22 17:12:21,993 | INFO     | current memory leak: -5.52 B/s (using 244 data points, chi2=0.17)
[2025-10-22 19:13:13] 2025-10-22 17:12:21,993 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | ..............................
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | . Timing measurements:
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | . get job = 0 s
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | . initial setup = 10 s
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | . payload setup = 123 s
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | . stage-in = 0 s
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | . payload execution = 17237 s
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | . stage-out = 1 s
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | . log creation = 0 s
[2025-10-22 19:13:13] 2025-10-22 17:12:21,994 | INFO     | ..............................
[2025-10-22 19:13:13] 2025-10-22 17:12:22,586 | INFO     | 
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | job summary report
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | --------------------------------------------------
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | PanDA job id: 6853142926
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | task id: 46771637
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | errors: (none)
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | pilot state: finished 
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | transexitcode: 0
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | exeerrorcode: 0
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | exeerrordiag: 
[2025-10-22 19:13:13] 2025-10-22 17:12:22,587 | INFO     | exitcode: 0
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | exitmsg: OK
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | cpuconsumptiontime: 64218 s
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | nevents: 400
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | neventsw: 0
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | pid: 6750
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | pgrp: 6750
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | corecount: 8
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | event service: False
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | sizes: {0: 2348103, 1: 2348789, 2: 2348988, 13: 2348988, 23: 2349044, 34: 2349072, 45: 2349228, 56: 2349256, 66: 2349284, 77: 2349312, 88: 2349368, 94: 2349938, 98
[2025-10-22 19:13:13] 2025-10-22 17:12:22,588 | INFO     | --------------------------------------------------
[2025-10-22 19:13:13] 2025-10-22 17:12:22,589 | INFO     | 
[2025-10-22 19:13:13] 2025-10-22 17:12:22,589 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-10-22 19:13:13] 2025-10-22 17:12:22,636 | INFO     | PID=32574 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-22 19:13:13] 2025-10-22 17:12:22,636 | INFO     | .. there are 9 such processes running
[2025-10-22 19:13:13] 2025-10-22 17:12:22,658 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,658 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,658 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,658 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,658 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,658 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,658 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,658 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,659 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 19:13:13] 2025-10-22 17:12:22,660 | INFO     | job 6853142926 has completed (purged errors)
[2025-10-22 19:13:13] 2025-10-22 17:12:22,660 | INFO     | overall cleanup function is called
[2025-10-22 19:13:13] 2025-10-22 17:12:23,669 | INFO     | --- collectZombieJob: --- 10, [6750]
[2025-10-22 19:13:13] 2025-10-22 17:12:23,669 | INFO     | zombie collector waiting for pid 6750
[2025-10-22 19:13:13] 2025-10-22 17:12:23,669 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 19:13:13] 2025-10-22 17:12:23,669 | INFO     | collected zombie processes
[2025-10-22 19:13:13] 2025-10-22 17:12:23,669 | INFO     | will attempt to kill all subprocesses of pid=6750
[2025-10-22 19:13:13] 2025-10-22 17:12:23,773 | INFO     | process IDs to be killed: [6750] (in reverse order)
[2025-10-22 19:13:13] 2025-10-22 17:12:23,956 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 19:13:13] 2025-10-22 17:12:23,956 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 19:13:13] 2025-10-22 17:12:23,960 | INFO     | did not find any defunct processes belonging to 6750
[2025-10-22 19:13:13] 2025-10-22 17:12:23,963 | INFO     | did not find any defunct processes belonging to 6750
[2025-10-22 19:13:13] 2025-10-22 17:12:23,964 | INFO     | ready for new job
[2025-10-22 19:13:13] 2025-10-22 17:12:23,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 19:13:13] 2025-10-22 17:12:23,969 | INFO     | ***************************************
[2025-10-22 19:13:13] 2025-10-22 17:12:23,970 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 19:13:13] 2025-10-22 17:12:23,970 | INFO     | ***************************************
[2025-10-22 19:13:13] 2025-10-22 17:12:23,970 | INFO     | 
[2025-10-22 19:13:13] 2025-10-22 17:12:23,970 | INFO     | pilot is running in a VM
[2025-10-22 19:13:13] 2025-10-22 17:12:23,971 | INFO     | architecture information:
[2025-10-22 19:13:13] 2025-10-22 17:12:23,971 | INFO     | executing command: cat /etc/os-release
[2025-10-22 19:13:13] 2025-10-22 17:12:24,002 | INFO     | cat /etc/os-release:
[2025-10-22 19:13:13] NAME="CentOS Linux"
[2025-10-22 19:13:13] VERSION="7 (Core)"
[2025-10-22 19:13:13] ID="centos"
[2025-10-22 19:13:13] ID_LIKE="rhel fedora"
[2025-10-22 19:13:13] VERSION_ID="7"
[2025-10-22 19:13:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 19:13:13] ANSI_COLOR="0;31"
[2025-10-22 19:13:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 19:13:13] HOME_URL="https://www.centos.org/"
[2025-10-22 19:13:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 19:13:13] 
[2025-10-22 19:13:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 19:13:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 19:13:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 19:13:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 19:13:13] 
[2025-10-22 19:13:13] 2025-10-22 17:12:24,002 | INFO     | ***************************************
[2025-10-22 19:13:13] 2025-10-22 17:12:24,504 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-10-22 19:13:13] 2025-10-22 17:12:24,564 | INFO     | sufficient remaining disk space (496455647232 B)
[2025-10-22 19:13:13] 2025-10-22 17:12:24,564 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 19:13:13] 2025-10-22 17:12:24,564 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 19:13:13] 2025-10-22 17:12:24,564 | INFO     | update_server=False
[2025-10-22 19:13:13] 2025-10-22 17:12:24,565 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 19:13:13] 2025-10-22 17:12:24,599 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-22 19:13:13] 2025-10-22 17:12:24,599 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-22 19:13:13] 2025-10-22 17:12:24,599 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 19:13:13] 2025-10-22 17:12:24,599 | INFO     | will abort loop
[2025-10-22 19:13:13] 2025-10-22 17:12:24,835 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 19:13:13] 2025-10-22 17:12:24,899 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 19:13:13] 2025-10-22 17:12:24,978 | INFO     | all payload control threads have been joined
[2025-10-22 19:13:13] 2025-10-22 17:12:25,092 | INFO     | all data control threads have been joined
[2025-10-22 19:13:13] 2025-10-22 17:12:25,571 | INFO     | [job] retrieve thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:25,604 | INFO     | [job] job monitor thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:25,629 | INFO     | [payload] failed_post thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:25,984 | INFO     | [payload] control thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:26,098 | INFO     | [data] control thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:26,111 | INFO     | [data] copytool_in thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:26,247 | INFO     | [payload] validate_post thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:26,255 | INFO     | all job control threads have been joined
[2025-10-22 19:13:13] 2025-10-22 17:12:26,431 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:26,638 | INFO     | [job] validate thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:26,653 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:26,842 | INFO     | [data] copytool_out thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:26,952 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:27,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 19:13:13] 2025-10-22 17:12:27,262 | INFO     | [job] control thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:28,145 | INFO     | [job] queue monitor thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:28,908 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:35,602 | INFO     | job.realtimelogging is not enabled
[2025-10-22 19:13:13] 2025-10-22 17:12:36,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 19:13:13] 2025-10-22 17:12:54,823 | INFO     | PID=32574 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-22 19:13:13] 2025-10-22 17:12:54,823 | INFO     | .. there are 9 such processes running
[2025-10-22 19:13:13] 2025-10-22 17:12:54,824 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 19:13:13] 2025-10-22 17:12:54,824 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 19:13:13] 2025-10-22 17:12:54,824 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 19:13:13] 2025-10-22 17:13:04,256 | INFO     | [monitor] cgroup control has ended
[2025-10-22 19:13:13] 2025-10-22 17:13:04,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998968334144)>', '<ExcThread(monitor, started 139998519080704)>']
[2025-10-22 19:13:13] 2025-10-22 17:13:04,883 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 19:13:13] 2025-10-22 17:13:04,883 | INFO     | [monitor] control thread has ended
[2025-10-22 19:13:13] 2025-10-22 17:13:09,286 | INFO     | all workflow threads have been joined
[2025-10-22 19:13:13] 2025-10-22 17:13:09,286 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 19:13:13] 2025-10-22 17:13:09,287 | INFO     | traces error code: 0
[2025-10-22 19:13:13] 2025-10-22 17:13:09,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 19:13:13] 2025-10-22 17:13:09,598 [wrapper] ==== pilot stdout END ====
[2025-10-22 19:13:13] 2025-10-22 17:13:09,698 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 19:13:13] 2025-10-22 17:13:09,811 [wrapper] pilotpid: 32574
[2025-10-22 19:13:13] 2025-10-22 17:13:09,868 [wrapper] Pilot exit status: 0
[2025-10-22 19:13:13] 2025-10-22 17:13:10,245 [wrapper] pandaids: 6853142926
[2025-10-22 19:13:13] 2025-10-22 17:13:11,061 [wrapper] cleanup supervisor_pilot 19670 32575
[2025-10-22 19:13:13] 2025-10-22 17:13:11,146 [wrapper] Test setup, not cleaning
[2025-10-22 19:13:13] 2025-10-22 17:13:11,242 [wrapper] apfmon messages muted
[2025-10-22 19:13:13] 2025-10-22 17:13:11,335 [wrapper] ==== wrapper stdout END ====
[2025-10-22 19:13:13] 2025-10-22 17:13:11,425 [wrapper] ==== wrapper stderr END ====
[2025-10-22 19:13:13]  *** Error codes and diagnostics ***
[2025-10-22 19:13:13]     "exeErrorCode": 0,
[2025-10-22 19:13:13]     "exeErrorDiag": "",
[2025-10-22 19:13:13]     "pilotErrorCode": 0,
[2025-10-22 19:13:13]     "pilotErrorDiag": "",
[2025-10-22 19:13:13]  *** Listing of results directory ***
[2025-10-22 19:13:13] total 442796
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc    557409 Oct 21 21:32 pilot3.tar.gz
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc      5112 Oct 21 21:38 queuedata.json
[2025-10-22 19:13:13] -rwx------. 1 boinc boinc     36292 Oct 21 21:39 runpilot2-wrapper.sh
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc       100 Oct 22 14:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 19:13:13] -rwxr-xr-x. 1 boinc boinc      7986 Oct 22 14:15 run_atlas
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc       105 Oct 22 14:15 job.xml
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc      6390 Oct 22 14:15 init_data.xml
[2025-10-22 19:13:13] -rw-r--r--. 2 boinc boinc 227549101 Oct 22 14:15 EVNT.46771634._002904.pool.root.1
[2025-10-22 19:13:13] -rw-r--r--. 2 boinc boinc     15120 Oct 22 14:15 start_atlas.sh
[2025-10-22 19:13:13] drwxrwx--x. 2 boinc boinc        68 Oct 22 14:15 shared
[2025-10-22 19:13:13] -rw-r--r--. 2 boinc boinc    569676 Oct 22 14:15 input.tar.gz
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc         0 Oct 22 14:15 boinc_lockfile
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc      2560 Oct 22 14:15 pandaJob.out
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc    977591 Oct 22 14:19 agis_schedconf.cvmfs.json
[2025-10-22 19:13:13] drwx------. 5 boinc boinc      4096 Oct 22 14:19 pilot3
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc 216269057 Oct 22 19:11 HITS.46771637._073248.pool.root.1
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc       531 Oct 22 19:11 boinc_task_state.xml
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc      1019 Oct 22 19:12 memory_monitor_summary.json
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc   1560740 Oct 22 19:12 agis_ddmendpoints.agis.ALL.json
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc    510799 Oct 22 19:12 log.46771637._073248.job.log.tgz.1
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc        95 Oct 22 19:12 pilot_heartbeat.json
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc      7785 Oct 22 19:12 heartbeat.json
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc        28 Oct 22 19:13 wrapper_checkpoint.txt
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc      8192 Oct 22 19:13 boinc_mmap_file
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc      5143 Oct 22 19:13 pilotlog.txt
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc   2345146 Oct 22 19:13 log.46771637._073248.job.log.1
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc       357 Oct 22 19:13 output.list
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc       620 Oct 22 19:13 runtime_log
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc   2877440 Oct 22 19:13 result.tar.gz
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc      8717 Oct 22 19:13 runtime_log.err
[2025-10-22 19:13:13] -rw-------. 1 boinc boinc       657 Oct 22 19:13 I1oLDmgNXV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7R3NDmnHIvRn.diag
[2025-10-22 19:13:13] -rw-r--r--. 1 boinc boinc     20766 Oct 22 19:13 stderr.txt
[2025-10-22 19:13:14] HITS file was successfully produced:
[2025-10-22 19:13:14] -rw-------. 1 boinc boinc 216269057 Oct 22 19:11 shared/HITS.pool.root.1
[2025-10-22 19:13:14]  *** Contents of shared directory: ***
[2025-10-22 19:13:14] total 436808
[2025-10-22 19:13:14] -rw-r--r--. 2 boinc boinc 227549101 Oct 22 14:15 ATLAS.root_0
[2025-10-22 19:13:14] -rw-r--r--. 2 boinc boinc     15120 Oct 22 14:15 start_atlas.sh
[2025-10-22 19:13:14] -rw-r--r--. 2 boinc boinc    569676 Oct 22 14:15 input.tar.gz
[2025-10-22 19:13:14] -rw-------. 1 boinc boinc 216269057 Oct 22 19:11 HITS.pool.root.1
[2025-10-22 19:13:14] -rw-------. 1 boinc boinc   2877440 Oct 22 19:13 result.tar.gz
19:13:15 (28780): run_atlas exited; CPU time 64467.104332
19:13:15 (28780): called boinc_finish(0)

</stderr_txt>
]]>

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