Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-21 20:45:24 (5464): vboxwrapper version 26210
2025-10-21 20:45:24 (5464): BOINC client version: 8.0.2
2025-10-21 20:45:26 (5464): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-10-21 20:45:26 (5464): Successfully copied 'init_data.xml' to the shared directory.
2025-10-21 20:45:27 (5464): Create VM. (boinc_14f44f5dbe625f5e, slot#0)
2025-10-21 20:45:28 (5464): Setting Memory Size for VM. (4100MB)
2025-10-21 20:45:29 (5464): Setting CPU Count for VM. (1)
2025-10-21 20:45:29 (5464): Setting Chipset Options for VM.
2025-10-21 20:45:29 (5464): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-21 20:45:30 (5464): Setting Boot Options for VM.
2025-10-21 20:45:31 (5464): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-21 20:45:31 (5464): Enabling VM Network Access.
2025-10-21 20:45:32 (5464): Disabling USB Support for VM.
2025-10-21 20:45:32 (5464): Disabling COM Port Support for VM.
2025-10-21 20:45:33 (5464): Disabling LPT Port Support for VM.
2025-10-21 20:45:34 (5464): Disabling Audio Support for VM.
2025-10-21 20:45:35 (5464): Disabling Clipboard Support for VM.
2025-10-21 20:45:35 (5464): Disabling Drag and Drop Support for VM.
2025-10-21 20:45:36 (5464): Adding storage controller(s) to VM.
2025-10-21 20:45:36 (5464): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-21 20:45:38 (5464): Adding VirtualBox Guest Additions to VM.
2025-10-21 20:45:39 (5464): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-21 20:45:39 (5464): forwarding host port 59450 to guest port 80
2025-10-21 20:45:40 (5464): Enabling remote desktop for VM.
2025-10-21 20:45:40 (5464): Required extension pack not installed, remote desktop not enabled.
2025-10-21 20:45:40 (5464): Enabling shared directory for VM.
2025-10-21 20:45:40 (5464): Starting VM using VBoxManage interface. (boinc_14f44f5dbe625f5e, slot#0)
2025-10-21 20:45:46 (5464): Successfully started VM. (PID = '15452')
2025-10-21 20:45:46 (5464): Reporting VM Process ID to BOINC.
2025-10-21 20:45:46 (5464): Guest Log: BIOS: VirtualBox 6.1.12
2025-10-21 20:45:46 (5464): Guest Log: CPUID EDX: 0x178bfbff
2025-10-21 20:45:46 (5464): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-21 20:45:46 (5464): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-21 20:45:46 (5464): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-21 20:45:46 (5464): Detected: Web Application Enabled (http://localhost:59450)
2025-10-21 20:45:46 (5464): Preference change detected
2025-10-21 20:45:46 (5464): Setting CPU throttle for VM. (100%)
2025-10-21 20:45:47 (5464): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-21 20:45:48 (5464): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-21 20:45:48 (5464): Guest Log: BIOS: Booting from Hard Disk...
2025-10-21 20:46:16 (5464): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-21 20:46:16 (5464): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-21 20:46:16 (5464): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-21 20:46:32 (5464): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-21 20:46:32 (5464): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-21 20:47:13 (5464): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-21 20:47:13 (5464): Guest Log: 00:00:00.001634 main     Log opened 2025-10-21T20:47:11.905025000Z
2025-10-21 20:47:13 (5464): Guest Log: 00:00:00.002249 main     OS Product: Linux
2025-10-21 20:47:13 (5464): Guest Log: 00:00:00.002353 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-21 20:47:13 (5464): Guest Log: 00:00:00.002427 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-21 20:47:13 (5464): Guest Log: 00:00:00.002519 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-21 20:47:13 (5464): Guest Log: 00:00:00.002521 main     Process ID: 1255
2025-10-21 20:47:13 (5464): Guest Log: 00:00:00.002521 main     Package type: LINUX_64BITS_GENERIC
2025-10-21 20:47:13 (5464): Guest Log: 00:00:00.005500 main     5.2.32 r132073 started. Verbose level = 0
2025-10-21 20:47:14 (5464): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-21 20:47:14 (5464): Guest Log: [INFO] Mounting shared directory
2025-10-21 20:47:15 (5464): Guest Log: [INFO] Checking for init_data.xml
2025-10-21 20:47:23 (5464): Guest Log: 00:00:10.084335 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 410 832 870 000ns (GuestNow=1 761 094 042 807 488 000 ns GuestLast=1 761 079 631 974 618 000 ns fSetTimeLastLoop=true )
2025-10-21 20:47:34 (5464): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-21 20:47:34 (5464): Guest Log: [INFO] Detected branch: prod
2025-10-21 20:47:35 (5464): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-21 20:47:35 (5464): Guest Log: Copying input files
2025-10-21 20:47:39 (5464): Guest Log: Copied input files into RunAtlas.
2025-10-21 20:47:39 (5464): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-21 20:47:39 (5464): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-21 20:47:39 (5464): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-21 20:47:39 (5464): Guest Log: Further information can be found at the LHC@home message board.
2025-10-21 20:48:04 (5464): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-21 20:48:06 (5464): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-21 20:48:06 (5464): Guest Log: 2.6.3.0 1534 0 30108 151976 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-21 20:48:14 (5464): Guest Log: copied the webapp to /var/www
2025-10-21 20:48:14 (5464): Guest Log: core_number=1
2025-10-21 20:48:15 (5464): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-21 20:48:16 (5464): Guest Log:  *** Starting ATLAS job. (PandaID=6853142574 taskID=46771637) ***
2025-10-21 21:03:58 (5464): Guest Log:  *** Job finished ***
2025-10-21 21:03:58 (5464): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:33,945 | INFO     | all workflow threads have been joined
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:33,946 | INFO     | end of generic workflow (traces error code: 0)
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:33,950 | INFO     | traces error code: 0
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:33,953 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,262 | INFO     | PID=5911 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,265 | INFO     | found 0 job(s) in 20 queues
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,265 | INFO     | [monitor] control thread has ended
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,668 [wrapper] ==== pilot stdout END ====
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,695 [wrapper] ==== wrapper stdout RESUME ====
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,722 [wrapper] pilotpid: 5911
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,749 [wrapper] Pilot exit status: 0
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:55,924 [wrapper] pandaids: 6853142574
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:56,036 [wrapper] cleanup supervisor_pilot  5917 5912
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:56,064 [wrapper] Test setup, not cleaning
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:56,093 [wrapper] apfmon messages muted
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:56,122 [wrapper] ==== wrapper stdout END ====
2025-10-21 21:03:58 (5464): Guest Log: 2025-10-22 01:03:56,149 [wrapper] ==== wrapper stderr END ====
2025-10-21 21:03:58 (5464): Guest Log:  *** Error codes and diagnostics ***
2025-10-21 21:03:58 (5464): Guest Log:     "exeErrorCode": 65,
2025-10-21 21:03:58 (5464): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-10-21 21:03:58 (5464): Guest Log:     "pilotErrorCode": 1305,
2025-10-21 21:03:58 (5464): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-10-21 21:03:58 (5464): Guest Log:  *** Listing of results directory ***
2025-10-21 21:03:58 (5464): Guest Log: total 4172
2025-10-21 21:03:58 (5464): Guest Log: -rw-r--r--. 1 atlas atlas  557409 Oct 21 18:27 pilot3.tar.gz
2025-10-21 21:03:58 (5464): Guest Log: -rwx------. 1 atlas atlas   36292 Oct 21 19:13 runpilot2-wrapper.sh
2025-10-21 21:03:58 (5464): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Oct 21 19:13 queuedata.json
2025-10-21 21:03:58 (5464): Guest Log: -rwxr-xr-x. 1 atlas atlas    6063 Oct 22 00:47 init_data.xml
2025-10-21 21:03:58 (5464): Guest Log: -rwxr-xr-x. 1 atlas atlas  569669 Oct 22 00:47 input.tar.gz
2025-10-21 21:03:58 (5464): Guest Log: -rwxr-xr-x. 1 atlas atlas   15120 Oct 22 00:47 start_atlas.sh
2025-10-21 21:03:58 (5464): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Oct 22 00:47 EVNT.46771634._002894.pool.root.1 -> /data/./ATLAS.root_0
2025-10-21 21:03:58 (5464): Guest Log: -rw-r--r--. 1 atlas atlas    2559 Oct 22 00:48 pandaJob.out
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas  978456 Oct 22 00:50 agis_schedconf.cvmfs.json
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas 1560740 Oct 22 00:50 agis_ddmendpoints.agis.ALL.json
2025-10-21 21:03:58 (5464): Guest Log: drwx------. 5 atlas atlas    4096 Oct 22 00:50 pilot3
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas   50834 Oct 22 01:00 log.46771637._072996.job.log.tgz.1
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas    8213 Oct 22 01:03 heartbeat.json
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas      95 Oct 22 01:03 pilot_heartbeat.json
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas     744 Oct 22 01:03 pilotlog.txt
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas  170222 Oct 22 01:03 log.46771637._072996.job.log.1
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas     188 Oct 22 01:03 output.list
2025-10-21 21:03:58 (5464): Guest Log: -rw-r--r--. 1 atlas atlas     620 Oct 22 01:03 runtime_log
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas  245760 Oct 22 01:03 result.tar.gz
2025-10-21 21:03:58 (5464): Guest Log: -rw-r--r--. 1 atlas atlas    8380 Oct 22 01:03 runtime_log.err
2025-10-21 21:03:58 (5464): Guest Log: -rw-------. 1 atlas atlas     650 Oct 22 01:03 8mhMDmLyWV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtO3NDmMv4hOn.diag
2025-10-21 21:03:58 (5464): Guest Log: Looking for outputfile HITS.46771637._072996.pool.root.1
2025-10-21 21:03:58 (5464): Guest Log: No HITS file was produced
2025-10-21 21:03:58 (5464): Guest Log: Successfully finished the ATLAS job!
2025-10-21 21:03:58 (5464): Guest Log: Copying the results back to the shared directory!
2025-10-21 21:03:58 (5464): Guest Log:  *** Contents of shared directory: ***
2025-10-21 21:03:59 (5464): Guest Log: total 222068
2025-10-21 21:03:59 (5464): Guest Log: -rwxrwxrwx. 1 root root 226552750 Oct 22 00:45 ATLAS.root_0
2025-10-21 21:03:59 (5464): Guest Log: -rwxrwxrwx. 1 root root      6063 Oct 22 00:45 init_data.xml
2025-10-21 21:03:59 (5464): Guest Log: -rwxrwxrwx. 1 root root    569669 Oct 21 23:47 input.tar.gz
2025-10-21 21:03:59 (5464): Guest Log: -rwxrwxrwx. 1 root root    245760 Oct 22 01:03 result.tar.gz
2025-10-21 21:03:59 (5464): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 21 23:47 start_atlas.sh
2025-10-21 21:03:59 (5464): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-21 21:03:59 (5464): VM Completion File Detected.
2025-10-21 21:03:59 (5464): Powering off VM.
2025-10-21 21:04:01 (5464): Successfully stopped VM.
2025-10-21 21:04:01 (5464): Deregistering VM. (boinc_14f44f5dbe625f5e, slot#0)
2025-10-21 21:04:01 (5464): Removing network bandwidth throttle group from VM.
2025-10-21 21:04:01 (5464): Removing VM from VirtualBox.
2025-10-21 21:04:07 (5464): called boinc_finish(0)

</stderr_txt>
]]>

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