Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:10:42 (7360): wrapper (7.7.26015): starting
12:10:42 (7360): wrapper: running run_atlas (--nthreads 8)
[2025-10-22 12:10:42] Arguments: --nthreads 8
[2025-10-22 12:10:42] Threads: 8
[2025-10-22 12:10:42] Checking for CVMFS
[2025-10-22 12:10:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 12:10:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 12:10:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 12:10:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 12:10:46] 2.11.2.0 9794 234658 140244 151991 2 15 18777265 25165825 4632 130560 0 118673317 99.899 63831814 3076 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-22 12:10:46] CVMFS is ok
[2025-10-22 12:10:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 12:10:46] Checking for apptainer binary...
[2025-10-22 12:10:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 12:10:46] Running /usr/bin/apptainer --version
[2025-10-22 12:10:46] apptainer version 1.3.2-1.el7
[2025-10-22 12:10:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 12:10:59] cg-vwn292.simple-grid.lan
[2025-10-22 12:10:59] apptainer works
[2025-10-22 12:10:59] Set ATHENA_PROC_NUMBER=8
[2025-10-22 12:10:59] Set ATHENA_CORE_NUMBER=8
[2025-10-22 12:11:00] Starting ATLAS job with PandaID=6853114438
[2025-10-22 12:11:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 17:00:09]  *** The last 200 lines of the pilot log: ***
[2025-10-22 17:00:09] 2025-10-22 14:59:00,879 | INFO     | sum of deviations: -63742628686.0
[2025-10-22 17:00:09] 2025-10-22 14:59:00,879 | INFO     | mean x: 1761136767.5
[2025-10-22 17:00:09] 2025-10-22 14:59:00,879 | INFO     | mean y: 2513168.3088235296
[2025-10-22 17:00:09] 2025-10-22 14:59:00,879 | INFO     | -- intersect: 17993036111.753662
[2025-10-22 17:00:09] 2025-10-22 14:59:00,879 | INFO     | intersect: 17993036111.753662
[2025-10-22 17:00:09] 2025-10-22 14:59:00,880 | INFO     | chi2: 3.3370528101408374
[2025-10-22 17:00:09] 2025-10-22 14:59:00,880 | INFO     | sum of square deviations: 5902093918.0
[2025-10-22 17:00:09] 2025-10-22 14:59:00,883 | INFO     | sum of deviations: -25817054826.999996
[2025-10-22 17:00:09] 2025-10-22 14:59:00,883 | INFO     | mean x: 1761136615.0
[2025-10-22 17:00:09] 2025-10-22 14:59:00,883 | INFO     | mean y: 2530105.127340824
[2025-10-22 17:00:09] 2025-10-22 14:59:00,883 | INFO     | -- intersect: 7706128383.8039
[2025-10-22 17:00:09] 2025-10-22 14:59:00,883 | INFO     | intersect: 7706128383.8039
[2025-10-22 17:00:09] 2025-10-22 14:59:00,884 | INFO     | chi2: 1.7291312288278642
[2025-10-22 17:00:09] 2025-10-22 14:59:00,884 | INFO     | current chi2=1.7291312288278642 (change=48.18388179014501 %)
[2025-10-22 17:00:09] 2025-10-22 14:59:00,884 | INFO     | sum of square deviations: 5576683165.5
[2025-10-22 17:00:09] 2025-10-22 14:59:00,886 | INFO     | sum of deviations: -25018610424.500004
[2025-10-22 17:00:09] 2025-10-22 14:59:00,887 | INFO     | mean x: 1761136462.5
[2025-10-22 17:00:09] 2025-10-22 14:59:00,887 | INFO     | mean y: 2530479.3473282442
[2025-10-22 17:00:09] 2025-10-22 14:59:00,887 | INFO     | -- intersect: 7903497013.048383
[2025-10-22 17:00:09] 2025-10-22 14:59:00,887 | INFO     | intersect: 7903497013.048383
[2025-10-22 17:00:09] 2025-10-22 14:59:00,887 | INFO     | chi2: 1.728174344308642
[2025-10-22 17:00:09] 2025-10-22 14:59:00,888 | INFO     | current chi2=1.728174344308642 (change=0.05533903403450275 %)
[2025-10-22 17:00:09] 2025-10-22 14:59:00,888 | INFO     | right removable region: 261
[2025-10-22 17:00:09] 2025-10-22 14:59:00,888 | INFO     | sum of square deviations: 5902093918.0
[2025-10-22 17:00:09] 2025-10-22 14:59:00,891 | INFO     | sum of deviations: -105821464344.00002
[2025-10-22 17:00:09] 2025-10-22 14:59:00,891 | INFO     | mean x: 1761136920.0
[2025-10-22 17:00:09] 2025-10-22 14:59:00,891 | INFO     | mean y: 2532006.3483146066
[2025-10-22 17:00:09] 2025-10-22 14:59:00,891 | INFO     | -- intersect: 31578798052.591534
[2025-10-22 17:00:09] 2025-10-22 14:59:00,891 | INFO     | intersect: 31578798052.591534
[2025-10-22 17:00:09] 2025-10-22 14:59:00,892 | INFO     | chi2: 1.8727159431046951
[2025-10-22 17:00:09] 2025-10-22 14:59:00,892 | INFO     | current chi2=1.8727159431046951 (change=43.881141544605676 %)
[2025-10-22 17:00:09] 2025-10-22 14:59:00,892 | INFO     | sum of square deviations: 5576683165.5
[2025-10-22 17:00:09] 2025-10-22 14:59:00,894 | INFO     | sum of deviations: -101325432473.5
[2025-10-22 17:00:09] 2025-10-22 14:59:00,895 | INFO     | mean x: 1761137072.5
[2025-10-22 17:00:09] 2025-10-22 14:59:00,895 | INFO     | mean y: 2529881.1259541987
[2025-10-22 17:00:09] 2025-10-22 14:59:00,895 | INFO     | -- intersect: 32001474454.5132
[2025-10-22 17:00:09] 2025-10-22 14:59:00,895 | INFO     | intersect: 32001474454.5132
[2025-10-22 17:00:09] 2025-10-22 14:59:00,895 | INFO     | chi2: 1.8641624885782453
[2025-10-22 17:00:09] 2025-10-22 14:59:00,896 | INFO     | current chi2=1.8641624885782453 (change=0.4567406262515948 %)
[2025-10-22 17:00:09] 2025-10-22 14:59:00,896 | INFO     | left removable region: 20
[2025-10-22 17:00:09] 2025-10-22 14:59:00,896 | INFO     | sum of square deviations: 4340323240.0
[2025-10-22 17:00:09] 2025-10-22 14:59:00,898 | INFO     | sum of deviations: -47546380155.0
[2025-10-22 17:00:09] 2025-10-22 14:59:00,898 | INFO     | mean x: 1761137042.0
[2025-10-22 17:00:09] 2025-10-22 14:59:00,898 | INFO     | mean y: 2540655.9751037345
[2025-10-22 17:00:09] 2025-10-22 14:59:00,898 | INFO     | -- intersect: 19295041853.186443
[2025-10-22 17:00:09] 2025-10-22 14:59:00,898 | INFO     | intersect: 19295041853.186443
[2025-10-22 17:00:09] 2025-10-22 14:59:00,899 | INFO     | chi2: 0.197071280248298
[2025-10-22 17:00:09] 2025-10-22 14:59:00,899 | INFO     | -- intersect: 19295041853.186443
[2025-10-22 17:00:09] 2025-10-22 14:59:00,899 | INFO     | current memory leak: -10.95 B/s (using 241 data points, chi2=0.20)
[2025-10-22 17:00:09] 2025-10-22 14:59:00,900 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-22 17:00:09] 2025-10-22 14:59:00,900 | INFO     | ..............................
[2025-10-22 17:00:09] 2025-10-22 14:59:00,900 | INFO     | . Timing measurements:
[2025-10-22 17:00:09] 2025-10-22 14:59:00,900 | INFO     | . get job = 0 s
[2025-10-22 17:00:09] 2025-10-22 14:59:00,900 | INFO     | . initial setup = 3 s
[2025-10-22 17:00:09] 2025-10-22 14:59:00,900 | INFO     | . payload setup = 127 s
[2025-10-22 17:00:09] 2025-10-22 14:59:00,901 | INFO     | . stage-in = 0 s
[2025-10-22 17:00:09] 2025-10-22 14:59:00,901 | INFO     | . payload execution = 16657 s
[2025-10-22 17:00:09] 2025-10-22 14:59:00,901 | INFO     | . stage-out = 4 s
[2025-10-22 17:00:09] 2025-10-22 14:59:00,901 | INFO     | . log creation = 1 s
[2025-10-22 17:00:09] 2025-10-22 14:59:00,901 | INFO     | ..............................
[2025-10-22 17:00:09] 2025-10-22 14:59:01,330 | INFO     | 
[2025-10-22 17:00:09] 2025-10-22 14:59:01,330 | INFO     | job summary report
[2025-10-22 17:00:09] 2025-10-22 14:59:01,330 | INFO     | --------------------------------------------------
[2025-10-22 17:00:09] 2025-10-22 14:59:01,330 | INFO     | PanDA job id: 6853114438
[2025-10-22 17:00:09] 2025-10-22 14:59:01,330 | INFO     | task id: 46771637
[2025-10-22 17:00:09] 2025-10-22 14:59:01,330 | INFO     | errors: (none)
[2025-10-22 17:00:09] 2025-10-22 14:59:01,330 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | pilot state: finished 
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | transexitcode: 0
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | exeerrorcode: 0
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | exeerrordiag: 
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | exitcode: 0
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | exitmsg: OK
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | cpuconsumptiontime: 62776 s
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | nevents: 400
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | neventsw: 0
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | pid: 17746
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | pgrp: 17746
[2025-10-22 17:00:09] 2025-10-22 14:59:01,331 | INFO     | corecount: 8
[2025-10-22 17:00:09] 2025-10-22 14:59:01,332 | INFO     | event service: False
[2025-10-22 17:00:09] 2025-10-22 14:59:01,332 | INFO     | sizes: {0: 2348103, 1: 2348789, 2: 2348988, 13: 2348988, 23: 2349044, 34: 2349072, 45: 2349228, 56: 2349256, 66: 2349284, 77: 2349312, 88: 2349938, 99: 2349938, 16
[2025-10-22 17:00:09] 2025-10-22 14:59:01,332 | INFO     | --------------------------------------------------
[2025-10-22 17:00:09] 2025-10-22 14:59:01,332 | INFO     | 
[2025-10-22 17:00:09] 2025-10-22 14:59:01,332 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-10-22 17:00:09] 2025-10-22 14:59:01,581 | INFO     | time since job start (17072s) is within the limit (172800.0s)
[2025-10-22 17:00:09] 2025-10-22 14:59:01,619 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 17:00:09] 2025-10-22 14:59:01,621 | INFO     | job 6853114438 has completed (purged errors)
[2025-10-22 17:00:09] 2025-10-22 14:59:01,622 | INFO     | overall cleanup function is called
[2025-10-22 17:00:09] 2025-10-22 14:59:02,633 | INFO     | --- collectZombieJob: --- 10, [17746]
[2025-10-22 17:00:09] 2025-10-22 14:59:02,633 | INFO     | zombie collector waiting for pid 17746
[2025-10-22 17:00:09] 2025-10-22 14:59:02,633 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 17:00:09] 2025-10-22 14:59:02,633 | INFO     | collected zombie processes
[2025-10-22 17:00:09] 2025-10-22 14:59:02,633 | INFO     | will attempt to kill all subprocesses of pid=17746
[2025-10-22 17:00:09] 2025-10-22 14:59:02,753 | INFO     | process IDs to be killed: [17746] (in reverse order)
[2025-10-22 17:00:09] 2025-10-22 14:59:03,580 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 17:00:09] 2025-10-22 14:59:03,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 17:00:09] 2025-10-22 14:59:03,584 | INFO     | did not find any defunct processes belonging to 17746
[2025-10-22 17:00:09] 2025-10-22 14:59:03,587 | INFO     | did not find any defunct processes belonging to 17746
[2025-10-22 17:00:09] 2025-10-22 14:59:03,587 | INFO     | ready for new job
[2025-10-22 17:00:09] 2025-10-22 14:59:03,587 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 17:00:09] 2025-10-22 14:59:03,589 | INFO     | ***************************************
[2025-10-22 17:00:09] 2025-10-22 14:59:03,590 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 17:00:09] 2025-10-22 14:59:03,590 | INFO     | ***************************************
[2025-10-22 17:00:09] 2025-10-22 14:59:03,590 | INFO     | 
[2025-10-22 17:00:09] 2025-10-22 14:59:03,590 | INFO     | pilot is running in a VM
[2025-10-22 17:00:09] 2025-10-22 14:59:03,590 | INFO     | architecture information:
[2025-10-22 17:00:09] 2025-10-22 14:59:03,601 | INFO     | executing command: cat /etc/os-release
[2025-10-22 17:00:09] 2025-10-22 14:59:03,843 | INFO     | cat /etc/os-release:
[2025-10-22 17:00:09] NAME="CentOS Linux"
[2025-10-22 17:00:09] VERSION="7 (Core)"
[2025-10-22 17:00:09] ID="centos"
[2025-10-22 17:00:09] ID_LIKE="rhel fedora"
[2025-10-22 17:00:09] VERSION_ID="7"
[2025-10-22 17:00:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 17:00:09] ANSI_COLOR="0;31"
[2025-10-22 17:00:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 17:00:09] HOME_URL="https://www.centos.org/"
[2025-10-22 17:00:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 17:00:09] 
[2025-10-22 17:00:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 17:00:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 17:00:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 17:00:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 17:00:09] 
[2025-10-22 17:00:09] 2025-10-22 14:59:03,844 | INFO     | ***************************************
[2025-10-22 17:00:09] 2025-10-22 14:59:04,347 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-10-22 17:00:09] 2025-10-22 14:59:04,578 | INFO     | sufficient remaining disk space (495606300672 B)
[2025-10-22 17:00:09] 2025-10-22 14:59:04,579 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 17:00:09] 2025-10-22 14:59:04,579 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 17:00:09] 2025-10-22 14:59:04,579 | INFO     | update_server=False
[2025-10-22 17:00:09] 2025-10-22 14:59:04,579 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 17:00:09] 2025-10-22 14:59:04,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 17:00:09] 2025-10-22 14:59:04,587 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 17:00:09] 2025-10-22 14:59:04,602 | INFO     | all payload control threads have been joined
[2025-10-22 17:00:09] 2025-10-22 14:59:04,605 | INFO     | all data control threads have been joined
[2025-10-22 17:00:09] 2025-10-22 14:59:04,950 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-22 17:00:09] 2025-10-22 14:59:04,950 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-22 17:00:09] 2025-10-22 14:59:04,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 17:00:09] 2025-10-22 14:59:04,950 | INFO     | will abort loop
[2025-10-22 17:00:09] 2025-10-22 14:59:05,585 | INFO     | [job] retrieve thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:05,608 | INFO     | [payload] control thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:05,611 | INFO     | [data] control thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:05,871 | INFO     | [payload] failed_post thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:05,956 | INFO     | [job] job monitor thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:05,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:06,032 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 17:00:09] 2025-10-22 14:59:06,103 | INFO     | [data] copytool_in thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:06,140 | INFO     | all job control threads have been joined
[2025-10-22 17:00:09] 2025-10-22 14:59:06,401 | INFO     | [payload] validate_post thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:06,587 | INFO     | [data] copytool_out thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:06,867 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:06,888 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:07,010 | INFO     | [job] validate thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:07,038 | INFO     | [job] queue monitor thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:07,057 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:07,146 | INFO     | [job] control thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:08,597 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 17:00:09] 2025-10-22 14:59:34,496 [wrapper] supervise_pilot (15 min periods counter: 20)
[2025-10-22 17:00:09] 2025-10-22 14:59:34,842 | INFO     | PID=11197 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-22 17:00:09] 2025-10-22 14:59:34,842 | INFO     | .. there are 9 such processes running
[2025-10-22 17:00:09] 2025-10-22 14:59:34,850 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 17:00:09] 2025-10-22 14:59:34,850 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 17:00:09] 2025-10-22 14:59:34,850 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 17:00:09] 2025-10-22 14:59:58,260 | INFO     | [monitor] cgroup control has ended
[2025-10-22 17:00:09] 2025-10-22 14:59:59,574 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139857317947200)>', '<ExcThread(monitor, started 139856885839616)>']
[2025-10-22 17:00:09] 2025-10-22 15:00:00,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 17:00:09] 2025-10-22 15:00:00,000 | INFO     | [monitor] control thread has ended
[2025-10-22 17:00:09] 2025-10-22 15:00:04,600 | INFO     | all workflow threads have been joined
[2025-10-22 17:00:09] 2025-10-22 15:00:04,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 17:00:09] 2025-10-22 15:00:04,600 | INFO     | traces error code: 0
[2025-10-22 17:00:09] 2025-10-22 15:00:04,600 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 17:00:09] 2025-10-22 15:00:05,042 [wrapper] ==== pilot stdout END ====
[2025-10-22 17:00:09] 2025-10-22 15:00:05,147 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 17:00:09] 2025-10-22 15:00:05,278 [wrapper] pilotpid: 11197
[2025-10-22 17:00:09] 2025-10-22 15:00:05,372 [wrapper] Pilot exit status: 0
[2025-10-22 17:00:09] 2025-10-22 15:00:05,712 [wrapper] pandaids: 6853114438
[2025-10-22 17:00:09] 2025-10-22 15:00:06,431 [wrapper] cleanup supervisor_pilot 23212 11198
[2025-10-22 17:00:09] 2025-10-22 15:00:06,483 [wrapper] Test setup, not cleaning
[2025-10-22 17:00:09] 2025-10-22 15:00:06,556 [wrapper] apfmon messages muted
[2025-10-22 17:00:09] 2025-10-22 15:00:06,669 [wrapper] ==== wrapper stdout END ====
[2025-10-22 17:00:09] 2025-10-22 15:00:06,783 [wrapper] ==== wrapper stderr END ====
[2025-10-22 17:00:09]  *** Error codes and diagnostics ***
[2025-10-22 17:00:09]     "exeErrorCode": 0,
[2025-10-22 17:00:09]     "exeErrorDiag": "",
[2025-10-22 17:00:09]     "pilotErrorCode": 0,
[2025-10-22 17:00:09]     "pilotErrorDiag": "",
[2025-10-22 17:00:09]  *** Listing of results directory ***
[2025-10-22 17:00:09] total 438408
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc    557409 Oct 21 18:27 pilot3.tar.gz
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc      5112 Oct 21 18:33 queuedata.json
[2025-10-22 17:00:09] -rwx------. 1 boinc boinc     36292 Oct 21 18:36 runpilot2-wrapper.sh
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc       100 Oct 22 12:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 17:00:09] -rwxr-xr-x. 1 boinc boinc      7986 Oct 22 12:10 run_atlas
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc       105 Oct 22 12:10 job.xml
[2025-10-22 17:00:09] -rw-r--r--. 2 boinc boinc 229722693 Oct 22 12:10 EVNT.46771634._002814.pool.root.1
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc      6391 Oct 22 12:10 init_data.xml
[2025-10-22 17:00:09] -rw-r--r--. 2 boinc boinc     15120 Oct 22 12:10 start_atlas.sh
[2025-10-22 17:00:09] drwxrwx--x. 2 boinc boinc        68 Oct 22 12:10 shared
[2025-10-22 17:00:09] -rw-r--r--. 2 boinc boinc    569677 Oct 22 12:10 input.tar.gz
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc         0 Oct 22 12:10 boinc_lockfile
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc      2560 Oct 22 12:10 pandaJob.out
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc    976986 Oct 22 12:14 agis_schedconf.cvmfs.json
[2025-10-22 17:00:09] drwx------. 5 boinc boinc      4096 Oct 22 12:14 pilot3
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc 209767709 Oct 22 16:55 HITS.46771637._070758.pool.root.1
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc       531 Oct 22 16:56 boinc_task_state.xml
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc      1019 Oct 22 16:57 memory_monitor_summary.json
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc   1560740 Oct 22 16:57 agis_ddmendpoints.agis.ALL.json
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc    493329 Oct 22 16:57 log.46771637._070758.job.log.tgz.1
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc      7782 Oct 22 16:59 heartbeat.json
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc        95 Oct 22 16:59 pilot_heartbeat.json
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc      8192 Oct 22 16:59 boinc_mmap_file
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc        28 Oct 22 16:59 wrapper_checkpoint.txt
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc      5071 Oct 22 17:00 pilotlog.txt
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc   2279851 Oct 22 17:00 log.46771637._070758.job.log.1
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc       357 Oct 22 17:00 output.list
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc       620 Oct 22 17:00 runtime_log
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc   2795520 Oct 22 17:00 result.tar.gz
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc      8717 Oct 22 17:00 runtime_log.err
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc       657 Oct 22 17:00 HGQKDmpWUV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmH32NDmeeGSnm.diag
[2025-10-22 17:00:09] -rw-r--r--. 1 boinc boinc     20676 Oct 22 17:00 stderr.txt
[2025-10-22 17:00:09] HITS file was successfully produced:
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc 209767709 Oct 22 16:55 shared/HITS.pool.root.1
[2025-10-22 17:00:09]  *** Contents of shared directory: ***
[2025-10-22 17:00:09] total 432500
[2025-10-22 17:00:09] -rw-r--r--. 2 boinc boinc 229722693 Oct 22 12:10 ATLAS.root_0
[2025-10-22 17:00:09] -rw-r--r--. 2 boinc boinc     15120 Oct 22 12:10 start_atlas.sh
[2025-10-22 17:00:09] -rw-r--r--. 2 boinc boinc    569677 Oct 22 12:10 input.tar.gz
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc 209767709 Oct 22 16:55 HITS.pool.root.1
[2025-10-22 17:00:09] -rw-------. 1 boinc boinc   2795520 Oct 22 17:00 result.tar.gz
17:00:11 (7360): run_atlas exited; CPU time 63002.116689
17:00:11 (7360): called boinc_finish(0)

</stderr_txt>
]]>

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