Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 06:22:22 (3671887): vboxwrapper version 26210
2025-10-22 06:22:22 (3671887): BOINC client version: 8.2.4
2025-10-22 06:22:22 (3671887): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-10-22 06:22:22 (3671887): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 06:22:22 (3671887): Create VM. (boinc_a6e1c9c5ff315fd3, slot#3)
2025-10-22 06:22:23 (3671887): Setting Memory Size for VM. (4400MB)
2025-10-22 06:22:23 (3671887): Setting CPU Count for VM. (4)
2025-10-22 06:22:23 (3671887): Setting Chipset Options for VM.
2025-10-22 06:22:23 (3671887): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 06:22:23 (3671887): Setting Boot Options for VM.
2025-10-22 06:22:23 (3671887): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 06:22:23 (3671887): Enabling VM Network Access.
2025-10-22 06:22:23 (3671887): Disabling USB Support for VM.
2025-10-22 06:22:24 (3671887): Disabling COM Port Support for VM.
2025-10-22 06:22:24 (3671887): Disabling LPT Port Support for VM.
2025-10-22 06:22:24 (3671887): Disabling Audio Support for VM.
2025-10-22 06:22:24 (3671887): Disabling Clipboard Support for VM.
2025-10-22 06:22:24 (3671887): Disabling Drag and Drop Support for VM.
2025-10-22 06:22:24 (3671887): Adding storage controller(s) to VM.
2025-10-22 06:22:24 (3671887): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 06:22:25 (3671887): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 06:22:25 (3671887): forwarding host port 45901 to guest port 80
2025-10-22 06:22:25 (3671887): Enabling remote desktop for VM.
2025-10-22 06:22:25 (3671887): Enabling shared directory for VM.
2025-10-22 06:22:25 (3671887): Starting VM using VBoxManage interface. (boinc_a6e1c9c5ff315fd3, slot#3)
2025-10-22 06:22:27 (3671887): Successfully started VM. (PID = '3672286')
2025-10-22 06:22:27 (3671887): Reporting VM Process ID to BOINC.
2025-10-22 06:22:27 (3671887): Guest Log: BIOS: VirtualBox 7.0.16
2025-10-22 06:22:27 (3671887): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 06:22:27 (3671887): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-22 06:22:27 (3671887): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 06:22:27 (3671887): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 06:22:27 (3671887): Detected: Web Application Enabled (http://localhost:45901)
2025-10-22 06:22:27 (3671887): Detected: Remote Desktop Enabled (localhost:58305)
2025-10-22 06:22:27 (3671887): Preference change detected
2025-10-22 06:22:27 (3671887): Setting CPU throttle for VM. (100%)
2025-10-22 06:22:27 (3671887): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 06:22:29 (3671887): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 06:22:29 (3671887): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 06:22:32 (3671887): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 06:22:32 (3671887): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 06:22:32 (3671887): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 06:23:37 (3671887): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 06:23:37 (3671887): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-22 06:23:45 (3671887): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 06:23:45 (3671887): Guest Log: 00:00:00.000258 main     Log opened 2025-10-22T03:23:43.206148000Z
2025-10-22 06:23:45 (3671887): Guest Log: 00:00:00.000411 main     OS Product: Linux
2025-10-22 06:23:45 (3671887): Guest Log: 00:00:00.000446 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 06:23:45 (3671887): Guest Log: 00:00:00.000472 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 06:23:45 (3671887): Guest Log: 00:00:00.000496 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 06:23:45 (3671887): Guest Log: 00:00:00.000497 main     Process ID: 1299
2025-10-22 06:23:45 (3671887): Guest Log: 00:00:00.000498 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 06:23:45 (3671887): Guest Log: 00:00:00.003236 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 06:23:45 (3671887): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 06:23:45 (3671887): Guest Log: [INFO] Mounting shared directory
2025-10-22 06:23:45 (3671887): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 06:23:53 (3671887): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 06:23:53 (3671887): Guest Log: [INFO] Detected branch: prod
2025-10-22 06:23:54 (3671887): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 06:23:54 (3671887): Guest Log: Copying input files
2025-10-22 06:23:55 (3671887): Guest Log: Copied input files into RunAtlas.
2025-10-22 06:23:55 (3671887): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 06:23:55 (3671887): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 06:23:55 (3671887): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 06:23:55 (3671887): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 06:24:08 (3671887): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 06:24:08 (3671887): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 06:24:08 (3671887): Guest Log: 2.6.3.0 1579 0 30176 151981 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 06:24:09 (3671887): Guest Log: copied the webapp to /var/www
2025-10-22 06:24:09 (3671887): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-22 06:24:09 (3671887): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-22 06:24:11 (3671887): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 06:24:11 (3671887): Guest Log:  *** Starting ATLAS job. (PandaID=6853142394 taskID=46771637) ***
2025-10-22 07:24:46 (3671887): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 09:45:37 (3671887): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 09:45:46 (3671887): Guest Log: 01:01:07.676752 timesync vgsvcTimeSyncWorker: Radical host time change: 8 461 333 000 000ns (HostNow=1 761 115 536 879 000 000 ns HostLast=1 761 107 075 546 000 000 ns)
2025-10-22 09:45:56 (3671887): Guest Log: 01:01:17.677872 timesync vgsvcTimeSyncWorker: Radical guest time change: 8 456 021 292 000ns (GuestNow=1 761 115 546 891 998 000 ns GuestLast=1 761 107 090 870 706 000 ns fSetTimeLastLoop=true )
2025-10-22 10:22:20 (3671887): Status Report: Elapsed Time: '6000.000000'
2025-10-22 10:22:20 (3671887): Status Report: CPU Time: '17638.520000'
2025-10-22 12:01:21 (3671887): Status Report: Elapsed Time: '12000.000000'
2025-10-22 12:01:21 (3671887): Status Report: CPU Time: '41327.080000'
2025-10-22 12:56:08 (3671887): Guest Log:  *** Job finished ***
2025-10-22 12:56:08 (3671887): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:21,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:21,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:47,275 | INFO     | [monitor] cgroup control has ended
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:49,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140342247987008)>', '<ExcThread(monitor, started 140341143402240)>']
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:49,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:49,985 | INFO     | [monitor] control thread has ended
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:54,052 | INFO     | all workflow threads have been joined
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:54,052 | INFO     | end of generic workflow (traces error code: 0)
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:54,052 | INFO     | traces error code: 0
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:54,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:54,182 [wrapper] ==== pilot stdout END ====
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:54,191 [wrapper] ==== wrapper stdout RESUME ====
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:54,203 [wrapper] pilotpid: 6028
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:54,210 [wrapper] Pilot exit status: 0
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:55,787 [wrapper] pandaids: 6853142394
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:55,836 [wrapper] cleanup supervisor_pilot 16864 6029
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:55,867 [wrapper] Test setup, not cleaning
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:55,876 [wrapper] apfmon messages muted
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:55,891 [wrapper] ==== wrapper stdout END ====
2025-10-22 12:56:08 (3671887): Guest Log: 2025-10-22 09:55:55,916 [wrapper] ==== wrapper stderr END ====
2025-10-22 12:56:08 (3671887): Guest Log:  *** Error codes and diagnostics ***
2025-10-22 12:56:08 (3671887): Guest Log:     "exeErrorCode": 0,
2025-10-22 12:56:08 (3671887): Guest Log:     "exeErrorDiag": "",
2025-10-22 12:56:08 (3671887): Guest Log:     "pilotErrorCode": 0,
2025-10-22 12:56:08 (3671887): Guest Log:     "pilotErrorDiag": "",
2025-10-22 12:56:08 (3671887): Guest Log:  *** Listing of results directory ***
2025-10-22 12:56:08 (3671887): Guest Log: total 216760
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 21 18:27 pilot3.tar.gz
2025-10-22 12:56:08 (3671887): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 21 19:13 runpilot2-wrapper.sh
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 21 19:13 queuedata.json
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 atlas atlas    569673 Oct 22 03:23 input.tar.gz
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 22 03:23 start_atlas.sh
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 atlas atlas      6659 Oct 22 03:23 init_data.xml
2025-10-22 12:56:08 (3671887): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 22 03:23 EVNT.46771634._002890.pool.root.1 -> /data/./ATLAS.root_0
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 22 03:24 pandaJob.out
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas    978456 Oct 22 03:30 agis_schedconf.cvmfs.json
2025-10-22 12:56:08 (3671887): Guest Log: drwx------. 5 atlas atlas      4096 Oct 22 03:30 pilot3
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas 213418049 Oct 22 09:53 HITS.46771637._072882.pool.root.1
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas      1031 Oct 22 09:54 memory_monitor_summary.json
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas        97 Oct 22 09:54 pilot_heartbeat.json
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 22 09:54 agis_ddmendpoints.agis.ALL.json
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas    392556 Oct 22 09:54 log.46771637._072882.job.log.tgz.1
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas      7821 Oct 22 09:54 heartbeat.json
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 22 09:55 pilotlog.txt
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas   1962811 Oct 22 09:55 log.46771637._072882.job.log.1
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas       357 Oct 22 09:55 output.list
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 22 09:55 runtime_log
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas   2375680 Oct 22 09:55 result.tar.gz
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 atlas atlas      8682 Oct 22 09:55 runtime_log.err
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas       672 Oct 22 09:55 D4WMDmLyWV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlO3NDmRDoYPm.diag
2025-10-22 12:56:08 (3671887): Guest Log: Looking for outputfile HITS.46771637._072882.pool.root.1
2025-10-22 12:56:08 (3671887): Guest Log: HITS file was successfully produced
2025-10-22 12:56:08 (3671887): Guest Log: -rw-------. 1 atlas atlas 213418049 Oct 22 09:53 /home/atlas/RunAtlas/HITS.46771637._072882.pool.root.1
2025-10-22 12:56:08 (3671887): Guest Log: Successfully finished the ATLAS job!
2025-10-22 12:56:08 (3671887): Guest Log: Copying the results back to the shared directory!
2025-10-22 12:56:08 (3671887): Guest Log:  *** Contents of shared directory: ***
2025-10-22 12:56:08 (3671887): Guest Log: total 225320
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 root root 227745887 Oct 22 03:22 ATLAS.root_0
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 root root      6659 Oct 22 03:22 init_data.xml
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 root root    569673 Oct 22 03:22 input.tar.gz
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 root root   2375680 Oct 22  2025 result.tar.gz
2025-10-22 12:56:08 (3671887): Guest Log: -rw-r--r--. 1 root root     15120 Oct 22 03:22 start_atlas.sh
2025-10-22 12:56:08 (3671887): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-22 12:56:08 (3671887): VM Completion File Detected.
2025-10-22 12:56:08 (3671887): Powering off VM.
2025-10-22 12:56:08 (3671887): Successfully stopped VM.
2025-10-22 12:56:08 (3671887): Deregistering VM. (boinc_a6e1c9c5ff315fd3, slot#3)
2025-10-22 12:56:08 (3671887): Removing network bandwidth throttle group from VM.
2025-10-22 12:56:09 (3671887): Removing VM from VirtualBox.
2025-10-22 12:56:14 (3671887): called boinc_finish(0)

</stderr_txt>
]]>

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