Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
03:33:52 (8027): wrapper (7.7.26015): starting
03:33:52 (8027): wrapper: running run_atlas (--nthreads 8)
[2025-10-22 03:33:52] Arguments: --nthreads 8
[2025-10-22 03:33:52] Threads: 8
[2025-10-22 03:33:52] Checking for CVMFS
[2025-10-22 03:33:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 03:33:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 03:33:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 03:33:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 03:33:52] 2.11.0.0 10277 14611 67636 151977 2 188 2939966 4096001 4678 130560 0 2119017 99.662 1213354 658 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-22 03:33:52] CVMFS is ok
[2025-10-22 03:33:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 03:33:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 03:33:52] Further information can be found at the LHC@home message board.
[2025-10-22 03:33:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 03:33:52] Checking for apptainer binary...
[2025-10-22 03:33:52] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-22 03:33:52] apptainer is not installed, using version from CVMFS
[2025-10-22 03:33:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 03:33:52] WARNING: Environment variable TMPDIR already has value [/tmp/job_10703019/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node137
[2025-10-22 03:33:52] apptainer works
[2025-10-22 03:33:52] Set ATHENA_PROC_NUMBER=8
[2025-10-22 03:33:52] Set ATHENA_CORE_NUMBER=8
[2025-10-22 03:33:52] Starting ATLAS job with PandaID=6853027443
[2025-10-22 03:33:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10703019/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 04:24:07]  *** The last 200 lines of the pilot log: ***
[2025-10-22 04:24:07]  protocol_id=None
[2025-10-22 04:24:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-22 04:24:07]  replicas=None
[2025-10-22 04:24:07]  scope=mc23_13p6TeV
[2025-10-22 04:24:07]  status=None
[2025-10-22 04:24:07]  status_code=0
[2025-10-22 04:24:07]  storage_token=
[2025-10-22 04:24:07]  surl=/tmp/job_10703019/atlas/pilot/slots/0/PanDA_Pilot-6853027443/log.46771637._066034.job.log.tgz.1
[2025-10-22 04:24:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/7c/log.46771637._066034.job.log.tgz.1
[2025-10-22 04:24:07]  workdir=None
[2025-10-22 04:24:07] ]
[2025-10-22 04:24:07] 2025-10-22 02:23:04,650 | INFO     | transferring file log.46771637._066034.job.log.tgz.1 from /tmp/job_10703019/atlas/pilot/slots/0/PanDA_Pilot-6853027443/log.46771637._066034.job.log.tgz.1 to /tmp/j
[2025-10-22 04:24:07] 2025-10-22 02:23:04,651 | INFO     | executing command: /usr/bin/env mv /tmp/job_10703019/atlas/pilot/slots/0/PanDA_Pilot-6853027443/log.46771637._066034.job.log.tgz.1 /tmp/job_10703019/atlas/pilot/sl
[2025-10-22 04:24:07] 2025-10-22 02:23:04,658 | INFO     | adding to output.list: log.46771637._066034.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/7c/log.46771637._066034.job.log.tg
[2025-10-22 04:24:07] 2025-10-22 02:23:04,658 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-22 04:24:07] 2025-10-22 02:23:04,658 | INFO     | summary of transferred files:
[2025-10-22 04:24:07] 2025-10-22 02:23:04,659 | INFO     |  -- lfn=log.46771637._066034.job.log.tgz.1, status_code=0, status=transferred
[2025-10-22 04:24:07] 2025-10-22 02:23:04,659 | INFO     | stage-out finished correctly
[2025-10-22 04:24:07] 2025-10-22 02:23:04,912 | INFO     | time since job start (2948s) is within the limit (172800.0s)
[2025-10-22 04:24:07] 2025-10-22 02:23:06,912 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-22 04:24:07] 2025-10-22 02:23:06,922 | INFO     | time since job start (2950s) is within the limit (172800.0s)
[2025-10-22 04:24:07] 2025-10-22 02:23:06,958 | INFO     | job 6853027443 has state=finished
[2025-10-22 04:24:07] 2025-10-22 02:23:06,958 | INFO     | preparing for final server update for job 6853027443 in state='finished'
[2025-10-22 04:24:07] 2025-10-22 02:23:06,958 | INFO     | this job has now completed (state=finished)
[2025-10-22 04:24:07] 2025-10-22 02:23:06,958 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-22 04:24:07] 2025-10-22 02:23:06,958 | INFO     | log transfer has been attempted: DONE
[2025-10-22 04:24:07] 2025-10-22 02:23:06,958 | INFO     | job 6853027443 has finished - writing final server update
[2025-10-22 04:24:07] 2025-10-22 02:23:06,958 | INFO     | total number of processed events: 400 (read)
[2025-10-22 04:24:07] 2025-10-22 02:23:06,959 | INFO     | executing command: lscpu
[2025-10-22 04:24:07] 2025-10-22 02:23:06,991 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-22 04:24:07] 2025-10-22 02:23:08,849 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-22 04:24:07] 2025-10-22 02:23:08,853 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2614.893984374999
[2025-10-22 04:24:07] 2025-10-22 02:23:08,858 | INFO     | using path: /tmp/job_10703019/atlas/pilot/slots/0/PanDA_Pilot-6853027443/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 04:24:07] 2025-10-22 02:23:08,859 | INFO     | extracted standard info from prmon json
[2025-10-22 04:24:07] 2025-10-22 02:23:08,859 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 04:24:07] 2025-10-22 02:23:08,859 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 04:24:07] 2025-10-22 02:23:08,859 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 04:24:07] 2025-10-22 02:23:08,859 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | fitting pss+swap vs Time
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | sum of square deviations: 21358540.0
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | sum of deviations: -210817951.99999997
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | mean x: 1761098380.0
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | mean y: 2552648.3414634145
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | -- intersect: 17385349119.54772
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | intersect: 17385349119.54772
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | chi2: 0.002569142097456181
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | -- intersect: 17385349119.54772
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | current memory leak: -9.87 B/s (using 41 data points, chi2=0.00)
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | could have reported an average CPU frequency of 2944 MHz (5 samples)
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | ..............................
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | . Timing measurements:
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | . get job = 0 s
[2025-10-22 04:24:07] 2025-10-22 02:23:08,860 | INFO     | . initial setup = 1 s
[2025-10-22 04:24:07] 2025-10-22 02:23:08,861 | INFO     | . payload setup = 2 s
[2025-10-22 04:24:07] 2025-10-22 02:23:08,861 | INFO     | . stage-in = 0 s
[2025-10-22 04:24:07] 2025-10-22 02:23:08,861 | INFO     | . payload execution = 2928 s
[2025-10-22 04:24:07] 2025-10-22 02:23:08,861 | INFO     | . stage-out = 0 s
[2025-10-22 04:24:07] 2025-10-22 02:23:08,861 | INFO     | . log creation = 0 s
[2025-10-22 04:24:07] 2025-10-22 02:23:08,861 | INFO     | ..............................
[2025-10-22 04:24:07] 2025-10-22 02:23:08,910 | INFO     | 
[2025-10-22 04:24:07] 2025-10-22 02:23:08,910 | INFO     | job summary report
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | --------------------------------------------------
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | PanDA job id: 6853027443
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | task id: 46771637
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | errors: (none)
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | pilot state: finished 
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | transexitcode: 0
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | exeerrorcode: 0
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | exeerrordiag: 
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | exitcode: 0
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | exitmsg: OK
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | cpuconsumptiontime: 21363 s
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | nevents: 400
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | neventsw: 0
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | pid: 8088
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | pgrp: 8088
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | corecount: 8
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | event service: False
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | sizes: {0: 2349057, 2: 2349319, 10: 2349347, 2933: 2374875, 2934: 2383903, 2937: 2383959, 2939: 2384313}
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | --------------------------------------------------
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | 
[2025-10-22 04:24:07] 2025-10-22 02:23:08,911 | INFO     | executing command: ls -lF /tmp/job_10703019/atlas/pilot/slots/0
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | job 6853027443 has completed (purged errors)
[2025-10-22 04:24:07] 2025-10-22 02:23:08,921 | INFO     | overall cleanup function is called
[2025-10-22 04:24:07] 2025-10-22 02:23:09,927 | INFO     | --- collectZombieJob: --- 10, [8088]
[2025-10-22 04:24:07] 2025-10-22 02:23:09,927 | INFO     | zombie collector waiting for pid 8088
[2025-10-22 04:24:07] 2025-10-22 02:23:09,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 04:24:07] 2025-10-22 02:23:09,927 | INFO     | collected zombie processes
[2025-10-22 04:24:07] 2025-10-22 02:23:09,927 | INFO     | will attempt to kill all subprocesses of pid=8088
[2025-10-22 04:24:07] 2025-10-22 02:23:10,027 | INFO     | process IDs to be killed: [8088] (in reverse order)
[2025-10-22 04:24:07] 2025-10-22 02:23:10,062 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 04:24:07] 2025-10-22 02:23:10,062 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 04:24:07] 2025-10-22 02:23:10,066 | INFO     | did not find any defunct processes belonging to 8088
[2025-10-22 04:24:07] 2025-10-22 02:23:10,069 | INFO     | did not find any defunct processes belonging to 8088
[2025-10-22 04:24:07] 2025-10-22 02:23:10,069 | INFO     | ready for new job
[2025-10-22 04:24:07] 2025-10-22 02:23:10,069 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 04:24:07] 2025-10-22 02:23:10,069 | INFO     | ***************************************
[2025-10-22 04:24:07] 2025-10-22 02:23:10,069 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 04:24:07] 2025-10-22 02:23:10,069 | INFO     | ***************************************
[2025-10-22 04:24:07] 2025-10-22 02:23:10,069 | INFO     | 
[2025-10-22 04:24:07] 2025-10-22 02:23:10,084 | INFO     | architecture information:
[2025-10-22 04:24:07] 2025-10-22 02:23:10,084 | INFO     | executing command: cat /etc/os-release
[2025-10-22 04:24:07] 2025-10-22 02:23:10,090 | INFO     | cat /etc/os-release:
[2025-10-22 04:24:07] NAME="CentOS Linux"
[2025-10-22 04:24:07] VERSION="7 (Core)"
[2025-10-22 04:24:07] ID="centos"
[2025-10-22 04:24:07] ID_LIKE="rhel fedora"
[2025-10-22 04:24:07] VERSION_ID="7"
[2025-10-22 04:24:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 04:24:07] ANSI_COLOR="0;31"
[2025-10-22 04:24:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 04:24:07] HOME_URL="https://www.centos.org/"
[2025-10-22 04:24:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 04:24:07] 
[2025-10-22 04:24:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 04:24:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 04:24:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 04:24:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 04:24:07] 
[2025-10-22 04:24:07] 2025-10-22 02:23:10,091 | INFO     | ***************************************
[2025-10-22 04:24:07] 2025-10-22 02:23:10,572 | WARNING  | process 8088 can no longer be monitored (due to stat problems) - aborting
[2025-10-22 04:24:07] 2025-10-22 02:23:10,593 | INFO     | executing command: df -mP /tmp/job_10703019/atlas/pilot/slots/0
[2025-10-22 04:24:07] 2025-10-22 02:23:10,600 | INFO     | sufficient remaining disk space (225696546816 B)
[2025-10-22 04:24:07] 2025-10-22 02:23:10,600 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 04:24:07] 2025-10-22 02:23:10,600 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 04:24:07] 2025-10-22 02:23:10,601 | INFO     | update_server=False
[2025-10-22 04:24:07] 2025-10-22 02:23:10,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 04:24:07] 2025-10-22 02:23:10,601 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 04:24:07] 2025-10-22 02:23:10,601 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 04:24:07] 2025-10-22 02:23:10,657 | INFO     | using path: /tmp/job_10703019/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 04:24:07] 2025-10-22 02:23:10,709 | INFO     | all payload control threads have been joined
[2025-10-22 04:24:07] 2025-10-22 02:23:10,752 | INFO     | number of running child processes to parent process 8088: 1
[2025-10-22 04:24:07] 2025-10-22 02:23:10,752 | INFO     | maximum number of monitored processes: 6
[2025-10-22 04:24:07] 2025-10-22 02:23:10,752 | INFO     | aborting job monitoring since job object (job id=6853027443) has expired
[2025-10-22 04:24:07] 2025-10-22 02:23:10,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 04:24:07] 2025-10-22 02:23:10,752 | INFO     | will abort loop
[2025-10-22 04:24:07] 2025-10-22 02:23:10,918 | INFO     | all data control threads have been joined
[2025-10-22 04:24:07] 2025-10-22 02:23:11,606 | INFO     | [job] retrieve thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:11,606 | INFO     | [job] queue monitor thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:11,714 | INFO     | [payload] control thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:11,757 | INFO     | [job] job monitor thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:11,923 | INFO     | [data] control thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:12,122 | INFO     | all job control threads have been joined
[2025-10-22 04:24:07] 2025-10-22 02:23:12,292 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:12,459 | INFO     | [job] validate thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:12,579 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:12,579 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:12,602 | INFO     | [data] copytool_out thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:12,848 | INFO     | [payload] validate_post thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:12,887 | INFO     | [data] copytool_in thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:12,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 04:24:07] 2025-10-22 02:23:13,128 | INFO     | [job] control thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:13,144 | INFO     | [payload] failed_post thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:16,967 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:20,887 | INFO     | job.realtimelogging is not enabled
[2025-10-22 04:24:07] 2025-10-22 02:23:21,892 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 04:24:07] 2025-10-22 02:23:40,110 | INFO     | PID=13018 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-22 04:24:07] 2025-10-22 02:23:40,110 | INFO     | .. there are 3 such processes running
[2025-10-22 04:24:07] 2025-10-22 02:23:40,110 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 04:24:07] 2025-10-22 02:23:40,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 04:24:07] 2025-10-22 02:23:40,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 04:24:07] 2025-10-22 02:24:01,132 | INFO     | [monitor] cgroup control has ended
[2025-10-22 04:24:07] 2025-10-22 02:24:02,008 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062568192)>']
[2025-10-22 04:24:07] 2025-10-22 02:24:02,218 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 04:24:07] 2025-10-22 02:24:02,218 | INFO     | [monitor] control thread has ended
[2025-10-22 04:24:07] 2025-10-22 02:24:07,033 | INFO     | all workflow threads have been joined
[2025-10-22 04:24:07] 2025-10-22 02:24:07,033 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 04:24:07] 2025-10-22 02:24:07,033 | INFO     | traces error code: 0
[2025-10-22 04:24:07] 2025-10-22 02:24:07,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 04:24:07] 2025-10-22 02:24:07,085 [wrapper] ==== pilot stdout END ====
[2025-10-22 04:24:07] 2025-10-22 02:24:07,086 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 04:24:07] 2025-10-22 02:24:07,087 [wrapper] pilotpid: 13018
[2025-10-22 04:24:07] 2025-10-22 02:24:07,089 [wrapper] Pilot exit status: 0
[2025-10-22 04:24:07] 2025-10-22 02:24:07,093 [wrapper] pandaids: 6853027443
[2025-10-22 04:24:07] 2025-10-22 02:24:07,115 [wrapper] cleanup supervisor_pilot 21479 13019
[2025-10-22 04:24:07] 2025-10-22 02:24:07,116 [wrapper] Test setup, not cleaning
[2025-10-22 04:24:07] 2025-10-22 02:24:07,118 [wrapper] apfmon messages muted
[2025-10-22 04:24:07] 2025-10-22 02:24:07,119 [wrapper] ==== wrapper stdout END ====
[2025-10-22 04:24:07] 2025-10-22 02:24:07,120 [wrapper] ==== wrapper stderr END ====
[2025-10-22 04:24:07]  *** Error codes and diagnostics ***
[2025-10-22 04:24:07]     "exeErrorCode": 0,
[2025-10-22 04:24:07]     "exeErrorDiag": "",
[2025-10-22 04:24:07]     "pilotErrorCode": 0,
[2025-10-22 04:24:07]     "pilotErrorDiag": "",
[2025-10-22 04:24:07]  *** Listing of results directory ***
[2025-10-22 04:24:07] total 429220
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user    557409 Oct 21 12:23 pilot3.tar.gz
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user      5112 Oct 21 12:30 queuedata.json
[2025-10-22 04:24:07] -rwx------ 1 mf493845 unix-user     36292 Oct 21 12:33 runpilot2-wrapper.sh
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user       100 Oct 22 02:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 04:24:07] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 22 02:36 run_atlas
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user       105 Oct 22 02:36 job.xml
[2025-10-22 04:24:07] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 22 03:33 start_atlas.sh
[2025-10-22 04:24:07] drwxrwx--x 2 mf493845 unix-user       100 Oct 22 03:33 shared
[2025-10-22 04:24:07] -rw-r--r-- 2 mf493845 unix-user    569679 Oct 22 03:33 input.tar.gz
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user      6394 Oct 22 03:33 init_data.xml
[2025-10-22 04:24:07] -rw-r--r-- 2 mf493845 unix-user 226647152 Oct 22 03:33 EVNT.46771634._002612.pool.root.1
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user         0 Oct 22 03:33 boinc_setup_complete
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user      8192 Oct 22 03:33 boinc_mmap_file
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user         0 Oct 22 03:33 boinc_lockfile
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user      2560 Oct 22 03:33 pandaJob.out
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user    978432 Oct 22 03:33 agis_schedconf.cvmfs.json
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user   1560740 Oct 22 03:33 agis_ddmendpoints.agis.ALL.json
[2025-10-22 04:24:07] drwx------ 5 mf493845 unix-user       440 Oct 22 03:33 pilot3
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user 207434580 Oct 22 04:22 HITS.46771637._066034.pool.root.1
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user      1020 Oct 22 04:23 memory_monitor_summary.json
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user    313093 Oct 22 04:23 log.46771637._066034.job.log.tgz.1
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user      7774 Oct 22 04:23 heartbeat.json
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user        95 Oct 22 04:23 pilot_heartbeat.json
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user      5437 Oct 22 04:24 pilotlog.txt
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user    467920 Oct 22 04:24 log.46771637._066034.job.log.1
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user       357 Oct 22 04:24 output.list
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user       620 Oct 22 04:24 runtime_log
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user    798720 Oct 22 04:24 result.tar.gz
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user       642 Oct 22 04:24 VwnNDmfrOV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlH2NDm9fzFWn.diag
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user      9076 Oct 22 04:24 runtime_log.err
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user     22228 Oct 22 04:24 stderr.txt
[2025-10-22 04:24:07] HITS file was successfully produced:
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user 207434580 Oct 22 04:22 shared/HITS.pool.root.1
[2025-10-22 04:24:07]  *** Contents of shared directory: ***
[2025-10-22 04:24:07] total 425268
[2025-10-22 04:24:07] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 22 03:33 start_atlas.sh
[2025-10-22 04:24:07] -rw-r--r-- 2 mf493845 unix-user    569679 Oct 22 03:33 input.tar.gz
[2025-10-22 04:24:07] -rw-r--r-- 2 mf493845 unix-user 226647152 Oct 22 03:33 ATLAS.root_0
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user 207434580 Oct 22 04:22 HITS.pool.root.1
[2025-10-22 04:24:07] -rw------- 1 mf493845 unix-user    798720 Oct 22 04:24 result.tar.gz
04:24:08 (8027): run_atlas exited; CPU time 21406.495700
04:24:08 (8027): called boinc_finish(0)

</stderr_txt>
]]>

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