Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:21:36 (14189): wrapper (7.7.26015): starting
22:21:36 (14189): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 22:21:36] Arguments: --nthreads 8
[2025-10-21 22:21:36] Threads: 8
[2025-10-21 22:21:36] Checking for CVMFS
[2025-10-21 22:21:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 22:21:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 22:21:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 22:21:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 22:21:37] 2.13.2.0 4296 12095 195628 151979 2 65 18525382 32935936 17116 16776704 0 42236005 99.626 38809259 28178 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-21 22:21:37] CVMFS is ok
[2025-10-21 22:21:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 22:21:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 22:21:37] Further information can be found at the LHC@home message board.
[2025-10-21 22:21:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 22:21:37] Checking for apptainer binary...
[2025-10-21 22:21:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 22:21:37] Running /usr/bin/apptainer --version
[2025-10-21 22:21:37] apptainer version 1.4.3-1.el9
[2025-10-21 22:21:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 22:21:38] c-8-24.aglt2.org
[2025-10-21 22:21:38] apptainer works
[2025-10-21 22:21:38] Set ATHENA_PROC_NUMBER=8
[2025-10-21 22:21:38] Set ATHENA_CORE_NUMBER=8
[2025-10-21 22:21:38] Starting ATLAS job with PandaID=6853115803
[2025-10-21 22:21:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 09:05:47]  *** The last 200 lines of the pilot log: ***
[2025-10-22 09:05:47] 2025-10-22 13:05:08,106 | INFO     | PID=17882 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-22 09:05:47] 2025-10-22 13:05:08,106 | INFO     | .. there are 20 such processes running
[2025-10-22 09:05:47] 2025-10-22 13:05:08,648 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-22 09:05:47] 2025-10-22 13:05:08,800 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1659999999983
[2025-10-22 09:05:47] 2025-10-22 13:05:08,885 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6853115803/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 09:05:47] 2025-10-22 13:05:08,886 | INFO     | extracted standard info from prmon json
[2025-10-22 09:05:47] 2025-10-22 13:05:08,886 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 09:05:47] 2025-10-22 13:05:08,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 09:05:47] 2025-10-22 13:05:08,887 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 09:05:47] 2025-10-22 13:05:08,887 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 09:05:47] 2025-10-22 13:05:08,968 | INFO     | fitting pss+swap vs Time
[2025-10-22 09:05:47] 2025-10-22 13:05:08,969 | INFO     | sum of square deviations: 77901993534.64336
[2025-10-22 09:05:47] 2025-10-22 13:05:08,991 | INFO     | sum of deviations: -532506809633.52454
[2025-10-22 09:05:47] 2025-10-22 13:05:08,991 | INFO     | mean x: 1761118990.0237718
[2025-10-22 09:05:47] 2025-10-22 13:05:08,991 | INFO     | mean y: 2109566.968304279
[2025-10-22 09:05:47] 2025-10-22 13:05:08,991 | INFO     | -- intersect: 12040413238.177006
[2025-10-22 09:05:47] 2025-10-22 13:05:08,991 | INFO     | intersect: 12040413238.177006
[2025-10-22 09:05:47] 2025-10-22 13:05:08,992 | INFO     | chi2: 3.8061955161322962
[2025-10-22 09:05:47] 2025-10-22 13:05:09,002 | INFO     | sum of square deviations: 76064881691.86119
[2025-10-22 09:05:47] 2025-10-22 13:05:09,020 | INFO     | sum of deviations: -469279201125.91534
[2025-10-22 09:05:47] 2025-10-22 13:05:09,020 | INFO     | mean x: 1761118837.5319488
[2025-10-22 09:05:47] 2025-10-22 13:05:09,020 | INFO     | mean y: 2114804.0207667733
[2025-10-22 09:05:47] 2025-10-22 13:05:09,020 | INFO     | -- intersect: 10867266011.548683
[2025-10-22 09:05:47] 2025-10-22 13:05:09,020 | INFO     | intersect: 10867266011.548683
[2025-10-22 09:05:47] 2025-10-22 13:05:09,021 | INFO     | chi2: 3.0554083849311167
[2025-10-22 09:05:47] 2025-10-22 13:05:09,022 | INFO     | current chi2=3.0554083849311167 (change=19.72539581897515 %)
[2025-10-22 09:05:47] 2025-10-22 13:05:09,022 | INFO     | right removable region: 625
[2025-10-22 09:05:47] 2025-10-22 13:05:09,027 | INFO     | sum of square deviations: 76064487631.86108
[2025-10-22 09:05:47] 2025-10-22 13:05:09,130 | INFO     | time since job start (38582s) is within the limit (172800.0s)
[2025-10-22 09:05:47] 2025-10-22 13:05:09,137 | INFO     | sum of deviations: -616427586386.7118
[2025-10-22 09:05:47] 2025-10-22 13:05:09,138 | INFO     | mean x: 1761119142.5319488
[2025-10-22 09:05:47] 2025-10-22 13:05:09,138 | INFO     | mean y: 2116511.485623003
[2025-10-22 09:05:47] 2025-10-22 13:05:09,138 | INFO     | -- intersect: 14274248700.48467
[2025-10-22 09:05:47] 2025-10-22 13:05:09,138 | INFO     | intersect: 14274248700.48467
[2025-10-22 09:05:47] 2025-10-22 13:05:09,139 | INFO     | chi2: 2.321000620857867
[2025-10-22 09:05:47] 2025-10-22 13:05:09,139 | INFO     | current chi2=2.321000620857867 (change=39.020457277602624 %)
[2025-10-22 09:05:47] 2025-10-22 13:05:09,140 | INFO     | sum of square deviations: 74256174562.14804
[2025-10-22 09:05:47] 2025-10-22 13:05:09,268 | INFO     | sum of deviations: -599904122526.8148
[2025-10-22 09:05:47] 2025-10-22 13:05:09,268 | INFO     | mean x: 1761119295.0370371
[2025-10-22 09:05:47] 2025-10-22 13:05:09,268 | INFO     | mean y: 2115113.8615136878
[2025-10-22 09:05:47] 2025-10-22 13:05:09,269 | INFO     | -- intersect: 14229924876.267277
[2025-10-22 09:05:47] 2025-10-22 13:05:09,269 | INFO     | intersect: 14229924876.267277
[2025-10-22 09:05:47] 2025-10-22 13:05:09,270 | INFO     | chi2: 2.2993838594478504
[2025-10-22 09:05:47] 2025-10-22 13:05:09,270 | INFO     | current chi2=2.2993838594478504 (change=0.9313552618536949 %)
[2025-10-22 09:05:47] 2025-10-22 13:05:09,270 | INFO     | left removable region: 20
[2025-10-22 09:05:47] 2025-10-22 13:05:09,271 | INFO     | sum of square deviations: 68662983409.199684
[2025-10-22 09:05:47] 2025-10-22 13:05:09,437 | INFO     | sum of deviations: -471542392619.8725
[2025-10-22 09:05:47] 2025-10-22 13:05:09,437 | INFO     | mean x: 1761119417.0545454
[2025-10-22 09:05:47] 2025-10-22 13:05:09,437 | INFO     | mean y: 2115267.93553719
[2025-10-22 09:05:47] 2025-10-22 13:05:09,437 | INFO     | -- intersect: 12096586296.934696
[2025-10-22 09:05:47] 2025-10-22 13:05:09,437 | INFO     | intersect: 12096586296.934696
[2025-10-22 09:05:47] 2025-10-22 13:05:09,479 | INFO     | chi2: 1.4589422881303202
[2025-10-22 09:05:47] 2025-10-22 13:05:09,503 | INFO     | -- intersect: 12096586296.934696
[2025-10-22 09:05:47] 2025-10-22 13:05:09,504 | INFO     | current memory leak: -6.87 B/s (using 605 data points, chi2=1.46)
[2025-10-22 09:05:47] 2025-10-22 13:05:09,504 | INFO     | could have reported an average CPU frequency of 2600 MHz (24 samples)
[2025-10-22 09:05:47] 2025-10-22 13:05:09,505 | INFO     | ..............................
[2025-10-22 09:05:47] 2025-10-22 13:05:09,505 | INFO     | . Timing measurements:
[2025-10-22 09:05:47] 2025-10-22 13:05:09,505 | INFO     | . get job = 0 s
[2025-10-22 09:05:47] 2025-10-22 13:05:09,505 | INFO     | . initial setup = 5 s
[2025-10-22 09:05:47] 2025-10-22 13:05:09,505 | INFO     | . payload setup = 15 s
[2025-10-22 09:05:47] 2025-10-22 13:05:09,505 | INFO     | . stage-in = 0 s
[2025-10-22 09:05:47] 2025-10-22 13:05:09,505 | INFO     | . payload execution = 38499 s
[2025-10-22 09:05:47] 2025-10-22 13:05:09,506 | INFO     | . stage-out = 5 s
[2025-10-22 09:05:47] 2025-10-22 13:05:09,506 | INFO     | . log creation = 0 s
[2025-10-22 09:05:47] 2025-10-22 13:05:09,506 | INFO     | ..............................
[2025-10-22 09:05:47] 2025-10-22 13:05:10,312 | INFO     | 
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | job summary report
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | --------------------------------------------------
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | PanDA job id: 6853115803
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | task id: 46771637
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | errors: (none)
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | pilot state: finished 
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | transexitcode: 0
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | exeerrorcode: 0
[2025-10-22 09:05:47] 2025-10-22 13:05:10,313 | INFO     | exeerrordiag: 
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | exitcode: 0
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | exitmsg: OK
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | cpuconsumptiontime: 56713 s
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | nevents: 400
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | neventsw: 0
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | pid: 24967
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | pgrp: 24967
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | corecount: 8
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | event service: False
[2025-10-22 09:05:47] 2025-10-22 13:05:10,314 | INFO     | sizes: {0: 2348101, 1: 2348786, 2: 2348985, 12: 2349247, 13: 2349275, 38520: 2390938, 38527: 2399936, 38530: 2399992, 38561: 2400186}
[2025-10-22 09:05:47] 2025-10-22 13:05:10,315 | INFO     | --------------------------------------------------
[2025-10-22 09:05:47] 2025-10-22 13:05:10,315 | INFO     | 
[2025-10-22 09:05:47] 2025-10-22 13:05:10,315 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-22 09:05:47] 2025-10-22 13:05:10,366 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,367 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,367 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,367 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,367 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,369 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,369 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,369 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 09:05:47] 2025-10-22 13:05:10,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,369 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 09:05:47] 2025-10-22 13:05:10,369 | INFO     | job 6853115803 has completed (purged errors)
[2025-10-22 09:05:47] 2025-10-22 13:05:10,369 | INFO     | overall cleanup function is called
[2025-10-22 09:05:47] 2025-10-22 13:05:11,404 | INFO     | --- collectZombieJob: --- 10, [24967]
[2025-10-22 09:05:47] 2025-10-22 13:05:11,404 | INFO     | zombie collector waiting for pid 24967
[2025-10-22 09:05:47] 2025-10-22 13:05:11,405 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 09:05:47] 2025-10-22 13:05:11,405 | INFO     | collected zombie processes
[2025-10-22 09:05:47] 2025-10-22 13:05:11,405 | INFO     | will attempt to kill all subprocesses of pid=24967
[2025-10-22 09:05:47] 2025-10-22 13:05:12,593 | INFO     | process IDs to be killed: [24967] (in reverse order)
[2025-10-22 09:05:47] 2025-10-22 13:05:12,727 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 09:05:47] 2025-10-22 13:05:12,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 09:05:47] 2025-10-22 13:05:12,748 | INFO     | did not find any defunct processes belonging to 24967
[2025-10-22 09:05:47] 2025-10-22 13:05:12,773 | INFO     | did not find any defunct processes belonging to 24967
[2025-10-22 09:05:47] 2025-10-22 13:05:12,773 | INFO     | ready for new job
[2025-10-22 09:05:47] 2025-10-22 13:05:12,773 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 09:05:47] 2025-10-22 13:05:12,776 | INFO     | ***************************************
[2025-10-22 09:05:47] 2025-10-22 13:05:12,777 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 09:05:47] 2025-10-22 13:05:12,777 | INFO     | ***************************************
[2025-10-22 09:05:47] 2025-10-22 13:05:12,777 | INFO     | 
[2025-10-22 09:05:47] 2025-10-22 13:05:12,792 | INFO     | architecture information:
[2025-10-22 09:05:47] 2025-10-22 13:05:12,796 | INFO     | executing command: cat /etc/os-release
[2025-10-22 09:05:47] 2025-10-22 13:05:12,910 | INFO     | cat /etc/os-release:
[2025-10-22 09:05:47] NAME="CentOS Linux"
[2025-10-22 09:05:47] VERSION="7 (Core)"
[2025-10-22 09:05:47] ID="centos"
[2025-10-22 09:05:47] ID_LIKE="rhel fedora"
[2025-10-22 09:05:47] VERSION_ID="7"
[2025-10-22 09:05:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 09:05:47] ANSI_COLOR="0;31"
[2025-10-22 09:05:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 09:05:47] HOME_URL="https://www.centos.org/"
[2025-10-22 09:05:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 09:05:47] 
[2025-10-22 09:05:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 09:05:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 09:05:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 09:05:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 09:05:47] 
[2025-10-22 09:05:47] 2025-10-22 13:05:12,911 | INFO     | ***************************************
[2025-10-22 09:05:47] 2025-10-22 13:05:13,414 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-22 09:05:47] 2025-10-22 13:05:13,494 | INFO     | sufficient remaining disk space (74930192384 B)
[2025-10-22 09:05:47] 2025-10-22 13:05:13,494 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 09:05:47] 2025-10-22 13:05:13,494 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 09:05:47] 2025-10-22 13:05:13,494 | INFO     | update_server=False
[2025-10-22 09:05:47] 2025-10-22 13:05:13,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 09:05:47] 2025-10-22 13:05:13,509 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 09:05:47] 2025-10-22 13:05:13,509 | INFO     | aborting loop
[2025-10-22 09:05:47] 2025-10-22 13:05:13,773 | INFO     | all payload control threads have been joined
[2025-10-22 09:05:47] 2025-10-22 13:05:14,190 | INFO     | all job control threads have been joined
[2025-10-22 09:05:47] 2025-10-22 13:05:14,500 | INFO     | [job] retrieve thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:14,507 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 09:05:47] 2025-10-22 13:05:14,515 | INFO     | [job] job monitor thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:14,575 | INFO     | all data control threads have been joined
[2025-10-22 09:05:47] 2025-10-22 13:05:14,784 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:14,796 | INFO     | [payload] control thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:14,908 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 09:05:47] 2025-10-22 13:05:14,922 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:14,932 | INFO     | [job] validate thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:14,941 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:15,195 | INFO     | [job] control thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:15,340 | INFO     | [data] copytool_in thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:15,581 | INFO     | [data] control thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:15,819 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:15,914 | INFO     | [job] queue monitor thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:16,101 | INFO     | [payload] failed_post thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:16,102 | INFO     | [payload] validate_post thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:16,514 | INFO     | [data] copytool_out thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:16,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 09:05:47] 2025-10-22 13:05:20,872 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 09:05:47] 2025-10-22 13:05:23,981 | INFO     | [monitor] cgroup control has ended
[2025-10-22 09:05:47] 2025-10-22 13:05:25,034 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140579439494976)>', '<ExcThread(monitor, started 140579086255872)>']
[2025-10-22 09:05:47] 2025-10-22 13:05:30,060 | INFO     | all workflow threads have been joined
[2025-10-22 09:05:47] 2025-10-22 13:05:30,061 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 09:05:47] 2025-10-22 13:05:30,062 | INFO     | traces error code: 0
[2025-10-22 09:05:47] 2025-10-22 13:05:30,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 09:05:47] 2025-10-22 13:05:44,212 | INFO     | PID=17882 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-22 09:05:47] 2025-10-22 13:05:44,212 | INFO     | .. there are 20 such processes running
[2025-10-22 09:05:47] 2025-10-22 13:05:44,214 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 09:05:47] 2025-10-22 13:05:44,214 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 09:05:47] 2025-10-22 13:05:44,214 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 09:05:47] 2025-10-22 13:05:44,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 09:05:47] 2025-10-22 13:05:44,214 | INFO     | [monitor] control thread has ended
[2025-10-22 09:05:47] 2025-10-22 13:05:46,637 [wrapper] ==== pilot stdout END ====
[2025-10-22 09:05:47] 2025-10-22 13:05:46,659 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 09:05:47] 2025-10-22 13:05:46,693 [wrapper] pilotpid: 17882
[2025-10-22 09:05:47] 2025-10-22 13:05:46,712 [wrapper] Pilot exit status: 0
[2025-10-22 09:05:47] 2025-10-22 13:05:46,861 [wrapper] pandaids: 6853115803
[2025-10-22 09:05:47] 2025-10-22 13:05:47,483 [wrapper] cleanup supervisor_pilot 1341171 17883
[2025-10-22 09:05:47] 2025-10-22 13:05:47,490 [wrapper] Test setup, not cleaning
[2025-10-22 09:05:47] 2025-10-22 13:05:47,493 [wrapper] apfmon messages muted
[2025-10-22 09:05:47] 2025-10-22 13:05:47,496 [wrapper] ==== wrapper stdout END ====
[2025-10-22 09:05:47] 2025-10-22 13:05:47,499 [wrapper] ==== wrapper stderr END ====
[2025-10-22 09:05:47]  *** Error codes and diagnostics ***
[2025-10-22 09:05:47]     "exeErrorCode": 0,
[2025-10-22 09:05:47]     "exeErrorDiag": "",
[2025-10-22 09:05:47]     "pilotErrorCode": 0,
[2025-10-22 09:05:47]     "pilotErrorDiag": "",
[2025-10-22 09:05:47]  *** Listing of results directory ***
[2025-10-22 09:05:47] total 436884
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas    557409 Oct 21 12:27 pilot3.tar.gz
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas      5112 Oct 21 13:18 queuedata.json
[2025-10-22 09:05:47] -rwx------. 1 boincer umatlas     36292 Oct 21 13:18 runpilot2-wrapper.sh
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas       100 Oct 21 22:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 09:05:47] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 21 22:21 run_atlas
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas       105 Oct 21 22:21 job.xml
[2025-10-22 09:05:47] -rw-r--r--. 2 boincer umatlas 227077022 Oct 21 22:21 EVNT.46771634._002842.pool.root.1
[2025-10-22 09:05:47] -rw-r--r--. 2 boincer umatlas     15120 Oct 21 22:21 start_atlas.sh
[2025-10-22 09:05:47] drwxrwx--x. 2 boincer umatlas      4096 Oct 21 22:21 shared
[2025-10-22 09:05:47] -rw-r--r--. 2 boincer umatlas    569675 Oct 21 22:21 input.tar.gz
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas         0 Oct 21 22:21 boinc_lockfile
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas      2559 Oct 21 22:21 pandaJob.out
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas    978440 Oct 21 22:22 agis_schedconf.cvmfs.json
[2025-10-22 09:05:47] drwx------. 5 boincer umatlas      4096 Oct 21 22:22 pilot3
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas 206023180 Oct 22 09:02 HITS.46771637._071472.pool.root.1
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas       531 Oct 22 09:02 boinc_task_state.xml
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas      6659 Oct 22 09:03 init_data.xml
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas      1043 Oct 22 09:04 memory_monitor_summary.json
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas   1560740 Oct 22 09:04 agis_ddmendpoints.agis.ALL.json
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas    730395 Oct 22 09:04 log.46771637._071472.job.log.tgz.1
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas      7829 Oct 22 09:05 heartbeat.json
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas        95 Oct 22 09:05 pilot_heartbeat.json
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas       821 Oct 22 09:05 pilotlog.txt
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas      8192 Oct 22 09:05 boinc_mmap_file
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas        28 Oct 22 09:05 wrapper_checkpoint.txt
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas   4457394 Oct 22 09:05 log.46771637._071472.job.log.1
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas       357 Oct 22 09:05 output.list
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas       620 Oct 22 09:05 runtime_log
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas   5201920 Oct 22 09:05 result.tar.gz
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas      8694 Oct 22 09:05 runtime_log.err
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas       656 Oct 22 09:05 r71LDm5AVV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHB3NDmLTb85m.diag
[2025-10-22 09:05:47] -rw-r--r--. 1 boincer umatlas     21258 Oct 22 09:05 stderr.txt
[2025-10-22 09:05:47] HITS file was successfully produced:
[2025-10-22 09:05:47] -rw-------. 1 boincer umatlas 206023180 Oct 22 09:02 shared/HITS.pool.root.1
[2025-10-22 09:05:47]  *** Contents of shared directory: ***
[2025-10-22 09:05:48] total 428612
[2025-10-22 09:05:48] -rw-r--r--. 2 boincer umatlas 227077022 Oct 21 22:21 ATLAS.root_0
[2025-10-22 09:05:48] -rw-r--r--. 2 boincer umatlas     15120 Oct 21 22:21 start_atlas.sh
[2025-10-22 09:05:48] -rw-r--r--. 2 boincer umatlas    569675 Oct 21 22:21 input.tar.gz
[2025-10-22 09:05:48] -rw-------. 1 boincer umatlas 206023180 Oct 22 09:02 HITS.pool.root.1
[2025-10-22 09:05:48] -rw-------. 1 boincer umatlas   5201920 Oct 22 09:05 result.tar.gz
09:05:49 (14189): run_atlas exited; CPU time 58004.896196
09:05:49 (14189): called boinc_finish(0)

</stderr_txt>
]]>

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