Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
21:00:01 (2281284): wrapper (7.7.26015): starting
21:00:01 (2281284): wrapper: running run_atlas (--nthreads 12)
[2025-10-21 21:00:01] Arguments: --nthreads 12
[2025-10-21 21:00:01] Threads: 12
[2025-10-21 21:00:01] Checking for CVMFS
[2025-10-21 21:00:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 21:00:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 21:00:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 21:00:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 21:00:02] 2.13.2.0 2884831 1687 60856 151977 3 188 4641591 6144001 3668 130560 0 9531840 99.998 59449 290 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-21 21:00:02] CVMFS is ok
[2025-10-21 21:00:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 21:00:02] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-21 21:00:02] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-21 21:00:02] Further information can be found at the LHC@home message board.
[2025-10-21 21:00:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 21:00:02] Checking for apptainer binary...
[2025-10-21 21:00:02] apptainer is not installed, using version from CVMFS
[2025-10-21 21:00:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 21:00:03] XeonFire
[2025-10-21 21:00:03] apptainer works
[2025-10-21 21:00:03] Set ATHENA_PROC_NUMBER=12
[2025-10-21 21:00:03] Set ATHENA_CORE_NUMBER=12
[2025-10-21 21:00:03] Starting ATLAS job with PandaID=6853083787
[2025-10-21 21:00:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 21:57:30]  *** The last 200 lines of the pilot log: ***
[2025-10-21 21:57:30] 2025-10-22 02:56:15,521 | INFO     | transferring file log.46771637._069245.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-6853083787/log.46771637._069245.job.log.tgz.1 to /var/lib/boinc
[2025-10-21 21:57:30] 2025-10-22 02:56:15,521 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-6853083787/log.46771637._069245.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.467716
[2025-10-21 21:57:30] 2025-10-22 02:56:15,542 | INFO     | adding to output.list: log.46771637._069245.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/ae/log.46771637._069245.job.log.tg
[2025-10-21 21:57:30] 2025-10-22 02:56:15,543 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-21 21:57:30] 2025-10-22 02:56:15,543 | INFO     | summary of transferred files:
[2025-10-21 21:57:30] 2025-10-22 02:56:15,543 | INFO     |  -- lfn=log.46771637._069245.job.log.tgz.1, status_code=0, status=transferred
[2025-10-21 21:57:30] 2025-10-22 02:56:15,543 | INFO     | stage-out finished correctly
[2025-10-21 21:57:30] 2025-10-22 02:56:15,602 | INFO     | time since job start (3355s) is within the limit (172800.0s)
[2025-10-21 21:57:30] 2025-10-22 02:56:16,164 | INFO     | monitor loop #249: job 0:6853083787 is in state 'finished'
[2025-10-21 21:57:30] 2025-10-22 02:56:16,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 21:57:30] 2025-10-22 02:56:16,774 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-21 21:57:30] 2025-10-22 02:56:17,612 | INFO     | time since job start (3357s) is within the limit (172800.0s)
[2025-10-21 21:57:30] 2025-10-22 02:56:18,668 | INFO     | monitor loop #250: job 0:6853083787 is in state 'finished'
[2025-10-21 21:57:30] 2025-10-22 02:56:18,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 21:57:30] 2025-10-22 02:56:19,063 | INFO     | job 6853083787 has state=finished
[2025-10-21 21:57:30] 2025-10-22 02:56:19,064 | INFO     | preparing for final server update for job 6853083787 in state='finished'
[2025-10-21 21:57:30] 2025-10-22 02:56:19,064 | INFO     | this job has now completed (state=finished)
[2025-10-21 21:57:30] 2025-10-22 02:56:19,064 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-21 21:57:30] 2025-10-22 02:56:19,064 | INFO     | log transfer has been attempted: DONE
[2025-10-21 21:57:30] 2025-10-22 02:56:19,065 | INFO     | job 6853083787 has finished - writing final server update
[2025-10-21 21:57:30] 2025-10-22 02:56:19,065 | INFO     | total number of processed events: 400 (read)
[2025-10-21 21:57:30] 2025-10-22 02:56:19,066 | INFO     | executing command: lscpu
[2025-10-21 21:57:30] 2025-10-22 02:56:19,139 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-21 21:57:30] 2025-10-22 02:56:19,617 | INFO     | time since job start (3359s) is within the limit (172800.0s)
[2025-10-21 21:57:30] 2025-10-22 02:56:21,171 | INFO     | monitor loop #251: job 0:6853083787 is in state 'finished'
[2025-10-21 21:57:30] 2025-10-22 02:56:21,172 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 21:57:30] 2025-10-22 02:56:21,623 | INFO     | time since job start (3361s) is within the limit (172800.0s)
[2025-10-21 21:57:30] 2025-10-22 02:56:23,141 | INFO     | PID=2285368 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-21 21:57:30] 2025-10-22 02:56:23,141 | INFO     | .. there are 5 such processes running
[2025-10-21 21:57:30] 2025-10-22 02:56:23,675 | INFO     | monitor loop #252: job 0:6853083787 is in state 'finished'
[2025-10-21 21:57:30] 2025-10-22 02:56:23,675 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 21:57:30] 2025-10-22 02:56:24,142 | INFO     | time since job start (3364s) is within the limit (172800.0s)
[2025-10-21 21:57:30] 2025-10-22 02:56:26,148 | INFO     | time since job start (3366s) is within the limit (172800.0s)
[2025-10-21 21:57:30] 2025-10-22 02:56:26,178 | INFO     | monitor loop #253: job 0:6853083787 is in state 'finished'
[2025-10-21 21:57:30] 2025-10-22 02:56:26,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 21:57:30] 2025-10-22 02:56:27,251 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 21:57:30] 2025-10-22 02:56:27,266 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2433.949829545455
[2025-10-21 21:57:30] 2025-10-22 02:56:27,282 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6853083787/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 21:57:30] 2025-10-22 02:56:27,283 | INFO     | extracted standard info from prmon json
[2025-10-21 21:57:30] 2025-10-22 02:56:27,283 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 21:57:30] 2025-10-22 02:56:27,283 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 21:57:30] 2025-10-22 02:56:27,283 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 21:57:30] 2025-10-22 02:56:27,283 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 21:57:30] 2025-10-22 02:56:27,285 | INFO     | fitting pss+swap vs Time
[2025-10-21 21:57:30] 2025-10-22 02:56:27,285 | INFO     | sum of square deviations: 34277852.0
[2025-10-21 21:57:30] 2025-10-22 02:56:27,285 | INFO     | sum of deviations: 443927408.5000001
[2025-10-21 21:57:30] 2025-10-22 02:56:27,286 | INFO     | mean x: 1761100186.5
[2025-10-21 21:57:30] 2025-10-22 02:56:27,286 | INFO     | mean y: 2678087.8541666665
[2025-10-21 21:57:30] 2025-10-22 02:56:27,286 | INFO     | -- intersect: -22805070831.238308
[2025-10-21 21:57:30] 2025-10-22 02:56:27,286 | INFO     | intersect: -22805070831.238308
[2025-10-21 21:57:30] 2025-10-22 02:56:27,286 | INFO     | chi2: 0.0009770665900798907
[2025-10-21 21:57:30] 2025-10-22 02:56:27,286 | INFO     | -- intersect: -22805070831.238308
[2025-10-21 21:57:30] 2025-10-22 02:56:27,286 | INFO     | current memory leak: 12.95 B/s (using 48 data points, chi2=0.00)
[2025-10-21 21:57:30] 2025-10-22 02:56:27,287 | INFO     | could have reported an average CPU frequency of 2373 MHz (5 samples)
[2025-10-21 21:57:30] 2025-10-22 02:56:27,287 | INFO     | ..............................
[2025-10-21 21:57:30] 2025-10-22 02:56:27,287 | INFO     | . Timing measurements:
[2025-10-21 21:57:30] 2025-10-22 02:56:27,287 | INFO     | . get job = 0 s
[2025-10-21 21:57:30] 2025-10-22 02:56:27,287 | INFO     | . initial setup = 5 s
[2025-10-21 21:57:30] 2025-10-22 02:56:27,287 | INFO     | . payload setup = 6 s
[2025-10-21 21:57:30] 2025-10-22 02:56:27,288 | INFO     | . stage-in = 0 s
[2025-10-21 21:57:30] 2025-10-22 02:56:27,288 | INFO     | . payload execution = 3326 s
[2025-10-21 21:57:30] 2025-10-22 02:56:27,288 | INFO     | . stage-out = 0 s
[2025-10-21 21:57:30] 2025-10-22 02:56:27,288 | INFO     | . log creation = 0 s
[2025-10-21 21:57:30] 2025-10-22 02:56:27,288 | INFO     | ..............................
[2025-10-21 21:57:30] 2025-10-22 02:56:27,475 | INFO     | 
[2025-10-21 21:57:30] 2025-10-22 02:56:27,476 | INFO     | job summary report
[2025-10-21 21:57:30] 2025-10-22 02:56:27,476 | INFO     | --------------------------------------------------
[2025-10-21 21:57:30] 2025-10-22 02:56:27,476 | INFO     | PanDA job id: 6853083787
[2025-10-21 21:57:30] 2025-10-22 02:56:27,476 | INFO     | task id: 46771637
[2025-10-21 21:57:30] 2025-10-22 02:56:27,476 | INFO     | errors: (none)
[2025-10-21 21:57:30] 2025-10-22 02:56:27,476 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | pilot state: finished 
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | transexitcode: 0
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | exeerrorcode: 0
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | exeerrordiag: 
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | exitcode: 0
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | exitmsg: OK
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | cpuconsumptiontime: 35566 s
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | nevents: 400
[2025-10-21 21:57:30] 2025-10-22 02:56:27,477 | INFO     | neventsw: 0
[2025-10-21 21:57:30] 2025-10-22 02:56:27,478 | INFO     | pid: 2292419
[2025-10-21 21:57:30] 2025-10-22 02:56:27,478 | INFO     | pgrp: 2292419
[2025-10-21 21:57:30] 2025-10-22 02:56:27,478 | INFO     | corecount: 12
[2025-10-21 21:57:30] 2025-10-22 02:56:27,478 | INFO     | event service: False
[2025-10-21 21:57:30] 2025-10-22 02:56:27,478 | INFO     | sizes: {0: 2348711, 1: 2348966, 6: 2349228, 12: 2349256, 3337: 2374625, 3338: 2374624, 3340: 2383820, 3341: 2383876, 3351: 2384102}
[2025-10-21 21:57:30] 2025-10-22 02:56:27,478 | INFO     | --------------------------------------------------
[2025-10-21 21:57:30] 2025-10-22 02:56:27,478 | INFO     | 
[2025-10-21 21:57:30] 2025-10-22 02:56:27,478 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-10-21 21:57:30] 2025-10-22 02:56:27,503 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,503 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,503 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,503 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,503 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,503 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,503 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,504 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,505 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,505 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 21:57:30] 2025-10-22 02:56:27,505 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,505 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 21:57:30] 2025-10-22 02:56:27,505 | INFO     | job 6853083787 has completed (purged errors)
[2025-10-21 21:57:30] 2025-10-22 02:56:27,505 | INFO     | overall cleanup function is called
[2025-10-21 21:57:30] 2025-10-22 02:56:28,514 | INFO     | --- collectZombieJob: --- 10, [2292419]
[2025-10-21 21:57:30] 2025-10-22 02:56:28,514 | INFO     | zombie collector waiting for pid 2292419
[2025-10-21 21:57:30] 2025-10-22 02:56:28,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 21:57:30] 2025-10-22 02:56:28,515 | INFO     | collected zombie processes
[2025-10-21 21:57:30] 2025-10-22 02:56:28,515 | INFO     | will attempt to kill all subprocesses of pid=2292419
[2025-10-21 21:57:30] 2025-10-22 02:56:28,965 | INFO     | process IDs to be killed: [2292419] (in reverse order)
[2025-10-21 21:57:30] 2025-10-22 02:56:29,093 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 21:57:30] 2025-10-22 02:56:29,094 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 21:57:30] 2025-10-22 02:56:29,104 | INFO     | did not find any defunct processes belonging to 2292419
[2025-10-21 21:57:30] 2025-10-22 02:56:29,112 | INFO     | did not find any defunct processes belonging to 2292419
[2025-10-21 21:57:30] 2025-10-22 02:56:29,112 | INFO     | ready for new job
[2025-10-21 21:57:30] 2025-10-22 02:56:29,113 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 21:57:30] 2025-10-22 02:56:29,114 | INFO     | ***************************************
[2025-10-21 21:57:30] 2025-10-22 02:56:29,114 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 21:57:30] 2025-10-22 02:56:29,114 | INFO     | ***************************************
[2025-10-21 21:57:30] 2025-10-22 02:56:29,115 | INFO     | 
[2025-10-21 21:57:30] 2025-10-22 02:56:29,119 | INFO     | architecture information:
[2025-10-21 21:57:30] 2025-10-22 02:56:29,120 | INFO     | executing command: cat /etc/os-release
[2025-10-21 21:57:30] 2025-10-22 02:56:29,135 | INFO     | cat /etc/os-release:
[2025-10-21 21:57:30] NAME="CentOS Linux"
[2025-10-21 21:57:30] VERSION="7 (Core)"
[2025-10-21 21:57:30] ID="centos"
[2025-10-21 21:57:30] ID_LIKE="rhel fedora"
[2025-10-21 21:57:30] VERSION_ID="7"
[2025-10-21 21:57:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 21:57:30] ANSI_COLOR="0;31"
[2025-10-21 21:57:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 21:57:30] HOME_URL="https://www.centos.org/"
[2025-10-21 21:57:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 21:57:30] 
[2025-10-21 21:57:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 21:57:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 21:57:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 21:57:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 21:57:30] 
[2025-10-21 21:57:30] 2025-10-22 02:56:29,135 | INFO     | ***************************************
[2025-10-21 21:57:30] 2025-10-22 02:56:29,638 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-10-21 21:57:30] 2025-10-22 02:56:29,657 | INFO     | sufficient remaining disk space (1809780310016 B)
[2025-10-21 21:57:30] 2025-10-22 02:56:29,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 21:57:30] 2025-10-22 02:56:29,658 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 21:57:30] 2025-10-22 02:56:29,658 | INFO     | update_server=False
[2025-10-21 21:57:30] 2025-10-22 02:56:29,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 21:57:30] 2025-10-22 02:56:29,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 21:57:30] 2025-10-22 02:56:29,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 21:57:30] 2025-10-22 02:56:29,687 | INFO     | aborting loop
[2025-10-21 21:57:30] 2025-10-22 02:56:30,030 | INFO     | all data control threads have been joined
[2025-10-21 21:57:30] 2025-10-22 02:56:30,470 | INFO     | all job control threads have been joined
[2025-10-21 21:57:30] 2025-10-22 02:56:30,664 | INFO     | [job] retrieve thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:30,692 | INFO     | [job] job monitor thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:30,693 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:30,817 | INFO     | [payload] validate_post thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:30,957 | INFO     | all payload control threads have been joined
[2025-10-21 21:57:30] 2025-10-22 02:56:31,025 | INFO     | [data] copytool_in thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:31,035 | INFO     | [data] control thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:31,475 | INFO     | [job] control thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:31,527 | INFO     | [job] validate thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:31,664 | INFO     | [data] copytool_out thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:31,843 | INFO     | [payload] failed_post thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:31,882 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:31,891 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 21:57:30] 2025-10-22 02:56:31,963 | INFO     | [payload] control thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:32,155 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:32,400 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 21:57:30] 2025-10-22 02:56:33,405 | INFO     | [job] queue monitor thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:35,897 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:40,447 | INFO     | job.realtimelogging is not enabled
[2025-10-21 21:57:30] 2025-10-22 02:56:41,452 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 21:57:30] 2025-10-22 02:56:59,706 | INFO     | PID=2285368 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-21 21:57:30] 2025-10-22 02:56:59,706 | INFO     | .. there are 5 such processes running
[2025-10-21 21:57:30] 2025-10-22 02:56:59,706 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 21:57:30] 2025-10-22 02:56:59,707 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 21:57:30] 2025-10-22 02:56:59,707 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 21:57:30] 2025-10-22 02:57:24,572 | INFO     | [monitor] cgroup control has ended
[2025-10-21 21:57:30] 2025-10-22 02:57:25,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135233012397888)>', '<ExcThread(monitor, started 135232313341696)>']
[2025-10-21 21:57:30] 2025-10-22 02:57:25,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 21:57:30] 2025-10-22 02:57:25,836 | INFO     | [monitor] control thread has ended
[2025-10-21 21:57:30] 2025-10-22 02:57:30,303 | INFO     | all workflow threads have been joined
[2025-10-21 21:57:30] 2025-10-22 02:57:30,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 21:57:30] 2025-10-22 02:57:30,304 | INFO     | traces error code: 0
[2025-10-21 21:57:30] 2025-10-22 02:57:30,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 21:57:30] 2025-10-22 02:57:30,414 [wrapper] ==== pilot stdout END ====
[2025-10-21 21:57:30] 2025-10-22 02:57:30,417 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 21:57:30] 2025-10-22 02:57:30,420 [wrapper] pilotpid: 2285368
[2025-10-21 21:57:30] 2025-10-22 02:57:30,423 [wrapper] Pilot exit status: 0
[2025-10-21 21:57:30] 2025-10-22 02:57:30,436 [wrapper] pandaids: 6853083787
[2025-10-21 21:57:30] 2025-10-22 02:57:30,507 [wrapper] cleanup supervisor_pilot 2402596 2285369
[2025-10-21 21:57:30] 2025-10-22 02:57:30,510 [wrapper] Test setup, not cleaning
[2025-10-21 21:57:30] 2025-10-22 02:57:30,514 [wrapper] apfmon messages muted
[2025-10-21 21:57:30] 2025-10-22 02:57:30,517 [wrapper] ==== wrapper stdout END ====
[2025-10-21 21:57:30] 2025-10-22 02:57:30,520 [wrapper] ==== wrapper stderr END ====
[2025-10-21 21:57:30]  *** Error codes and diagnostics ***
[2025-10-21 21:57:30]     "exeErrorCode": 0,
[2025-10-21 21:57:30]     "exeErrorDiag": "",
[2025-10-21 21:57:30]     "pilotErrorCode": 0,
[2025-10-21 21:57:30]     "pilotErrorDiag": "",
[2025-10-21 21:57:30]  *** Listing of results directory ***
[2025-10-21 21:57:30] total 428260
[2025-10-21 21:57:30] -rw-r--r-- 1 mark mark    557409 Oct 21 09:25 pilot3.tar.gz
[2025-10-21 21:57:30] -rw-r--r-- 1 mark mark      5112 Oct 21 09:43 queuedata.json
[2025-10-21 21:57:30] -rwx------ 1 mark mark     36292 Oct 21 09:47 runpilot2-wrapper.sh
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark       100 Oct 21 21:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 21:57:30] -rwxr-xr-x 1 mark mark      7986 Oct 21 21:00 run_atlas
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark       105 Oct 21 21:00 job.xml
[2025-10-21 21:57:30] -rw-r--r-- 2 mark mark 227624667 Oct 21 21:00 EVNT.46771634._002751.pool.root.1
[2025-10-21 21:57:30] -rw-r--r-- 2 mark mark     15120 Oct 21 21:00 start_atlas.sh
[2025-10-21 21:57:30] drwxrwx--x 2 mark mark      4096 Oct 21 21:00 shared
[2025-10-21 21:57:30] -rw-r--r-- 2 mark mark    569677 Oct 21 21:00 input.tar.gz
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark      9229 Oct 21 21:00 init_data.xml
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark         0 Oct 21 21:00 boinc_setup_complete
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark         0 Oct 21 21:00 boinc_lockfile
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark      2560 Oct 21 21:00 pandaJob.out
[2025-10-21 21:57:30] -rw------- 1 mark mark    978432 Oct 21 21:00 agis_schedconf.cvmfs.json
[2025-10-21 21:57:30] -rw------- 1 mark mark   1560740 Oct 21 21:00 agis_ddmendpoints.agis.ALL.json
[2025-10-21 21:57:30] drwx------ 5 mark mark      4096 Oct 21 21:00 pilot3
[2025-10-21 21:57:30] -rw------- 1 mark mark 205260348 Oct 21 21:55 HITS.46771637._069245.pool.root.1
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark       529 Oct 21 21:55 boinc_task_state.xml
[2025-10-21 21:57:30] -rw------- 1 mark mark      1034 Oct 21 21:56 memory_monitor_summary.json
[2025-10-21 21:57:30] -rw------- 1 mark mark    359893 Oct 21 21:56 log.46771637._069245.job.log.tgz.1
[2025-10-21 21:57:30] -rw------- 1 mark mark        95 Oct 21 21:56 pilot_heartbeat.json
[2025-10-21 21:57:30] -rw------- 1 mark mark      7785 Oct 21 21:56 heartbeat.json
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark      8192 Oct 21 21:57 boinc_mmap_file
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark        27 Oct 21 21:57 wrapper_checkpoint.txt
[2025-10-21 21:57:30] -rw------- 1 mark mark      4904 Oct 21 21:57 pilotlog.txt
[2025-10-21 21:57:30] -rw------- 1 mark mark    509439 Oct 21 21:57 log.46771637._069245.job.log.1
[2025-10-21 21:57:30] -rw------- 1 mark mark       357 Oct 21 21:57 output.list
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark       620 Oct 21 21:57 runtime_log
[2025-10-21 21:57:30] -rw------- 1 mark mark    890880 Oct 21 21:57 result.tar.gz
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark      8759 Oct 21 21:57 runtime_log.err
[2025-10-21 21:57:30] -rw------- 1 mark mark       645 Oct 21 21:57 fXvKDmqoSV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmbjfMDmS1Ywmm.diag
[2025-10-21 21:57:30] -rw-rw-r-- 1 mark mark     22664 Oct 21 21:57 stderr.txt
[2025-10-21 21:57:30] HITS file was successfully produced:
[2025-10-21 21:57:30] -rw------- 1 mark mark 205260348 Oct 21 21:55 shared/HITS.pool.root.1
[2025-10-21 21:57:30]  *** Contents of shared directory: ***
[2025-10-21 21:57:30] total 424200
[2025-10-21 21:57:30] -rw-r--r-- 2 mark mark 227624667 Oct 21 21:00 ATLAS.root_0
[2025-10-21 21:57:30] -rw-r--r-- 2 mark mark     15120 Oct 21 21:00 start_atlas.sh
[2025-10-21 21:57:30] -rw-r--r-- 2 mark mark    569677 Oct 21 21:00 input.tar.gz
[2025-10-21 21:57:30] -rw------- 1 mark mark 205260348 Oct 21 21:55 HITS.pool.root.1
[2025-10-21 21:57:30] -rw------- 1 mark mark    890880 Oct 21 21:57 result.tar.gz
21:57:31 (2281284): run_atlas exited; CPU time 35691.818950
21:57:31 (2281284): called boinc_finish(0)

</stderr_txt>
]]>

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