Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:14:59 (1241502): wrapper (7.7.26015): starting
05:14:59 (1241502): wrapper: running run_atlas (--nthreads 3)
[2025-10-22 05:14:59] Arguments: --nthreads 3
[2025-10-22 05:14:59] Threads: 3
[2025-10-22 05:14:59] Checking for CVMFS
[2025-10-22 05:14:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 05:14:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 05:14:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 05:14:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 05:14:59] 2.9.2.0 788955 1551 80476 151979 1 57 31323690 36864001 0 130560 0 1193042 99.990 56029 1023 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-22 05:14:59] CVMFS is ok
[2025-10-22 05:14:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 05:14:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 05:14:59] Further information can be found at the LHC@home message board.
[2025-10-22 05:14:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 05:14:59] Checking for apptainer binary...
[2025-10-22 05:14:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 05:14:59] Running /usr/bin/apptainer --version
[2025-10-22 05:15:00] apptainer version 1.4.1-1.1
[2025-10-22 05:15:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 05:15:00] magicA161
[2025-10-22 05:15:00] apptainer works
[2025-10-22 05:15:00] Set ATHENA_PROC_NUMBER=3
[2025-10-22 05:15:00] Set ATHENA_CORE_NUMBER=3
[2025-10-22 05:15:00] Starting ATLAS job with PandaID=6853020668
[2025-10-22 05:15:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 06:47:18]  *** The last 200 lines of the pilot log: ***
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,539 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | job 6853020668 has completed (purged errors)
[2025-10-22 06:47:18] 2025-10-22 04:46:38,540 | INFO     | overall cleanup function is called
[2025-10-22 06:47:18] 2025-10-22 04:46:39,546 | INFO     | --- collectZombieJob: --- 10, [1251654]
[2025-10-22 06:47:18] 2025-10-22 04:46:39,547 | INFO     | zombie collector waiting for pid 1251654
[2025-10-22 06:47:18] 2025-10-22 04:46:39,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 06:47:18] 2025-10-22 04:46:39,547 | INFO     | collected zombie processes
[2025-10-22 06:47:18] 2025-10-22 04:46:39,547 | INFO     | will attempt to kill all subprocesses of pid=1251654
[2025-10-22 06:47:18] 2025-10-22 04:46:39,589 | INFO     | process IDs to be killed: [1251654] (in reverse order)
[2025-10-22 06:47:18] 2025-10-22 04:46:39,615 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 06:47:18] 2025-10-22 04:46:39,615 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 06:47:18] 2025-10-22 04:46:39,616 | INFO     | did not find any defunct processes belonging to 1251654
[2025-10-22 06:47:18] 2025-10-22 04:46:39,617 | INFO     | did not find any defunct processes belonging to 1251654
[2025-10-22 06:47:18] 2025-10-22 04:46:39,617 | INFO     | ready for new job
[2025-10-22 06:47:18] 2025-10-22 04:46:39,618 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 06:47:18] 2025-10-22 04:46:39,618 | INFO     | ***************************************
[2025-10-22 06:47:18] 2025-10-22 04:46:39,618 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 06:47:18] 2025-10-22 04:46:39,618 | INFO     | ***************************************
[2025-10-22 06:47:18] 2025-10-22 04:46:39,618 | INFO     | 
[2025-10-22 06:47:18] 2025-10-22 04:46:39,619 | INFO     | architecture information:
[2025-10-22 06:47:18] 2025-10-22 04:46:39,619 | INFO     | executing command: cat /etc/os-release
[2025-10-22 06:47:18] 2025-10-22 04:46:39,628 | INFO     | cat /etc/os-release:
[2025-10-22 06:47:18] NAME="CentOS Linux"
[2025-10-22 06:47:18] VERSION="7 (Core)"
[2025-10-22 06:47:18] ID="centos"
[2025-10-22 06:47:18] ID_LIKE="rhel fedora"
[2025-10-22 06:47:18] VERSION_ID="7"
[2025-10-22 06:47:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 06:47:18] ANSI_COLOR="0;31"
[2025-10-22 06:47:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 06:47:18] HOME_URL="https://www.centos.org/"
[2025-10-22 06:47:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 06:47:18] 
[2025-10-22 06:47:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 06:47:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 06:47:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 06:47:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 06:47:18] 
[2025-10-22 06:47:18] 2025-10-22 04:46:39,628 | INFO     | ***************************************
[2025-10-22 06:47:18] 2025-10-22 04:46:40,131 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-22 06:47:18] 2025-10-22 04:46:40,145 | INFO     | sufficient remaining disk space (373239578624 B)
[2025-10-22 06:47:18] 2025-10-22 04:46:40,145 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 06:47:18] 2025-10-22 04:46:40,145 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 06:47:18] 2025-10-22 04:46:40,145 | INFO     | update_server=False
[2025-10-22 06:47:18] 2025-10-22 04:46:40,145 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 06:47:18] 2025-10-22 04:46:40,145 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 06:47:18] 2025-10-22 04:46:40,145 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 06:47:18] 2025-10-22 04:46:40,145 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 06:47:18] 2025-10-22 04:46:40,146 | INFO     | aborting loop
[2025-10-22 06:47:18] 2025-10-22 04:46:40,545 | INFO     | all job control threads have been joined
[2025-10-22 06:47:18] 2025-10-22 04:46:40,610 | INFO     | all data control threads have been joined
[2025-10-22 06:47:18] 2025-10-22 04:46:40,686 | INFO     | all payload control threads have been joined
[2025-10-22 06:47:18] 2025-10-22 04:46:41,151 | INFO     | [job] retrieve thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:41,151 | INFO     | [job] queue monitor thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:41,151 | INFO     | [job] job monitor thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:41,393 | INFO     | [payload] validate_post thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:41,551 | INFO     | [job] control thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:41,616 | INFO     | [data] control thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:41,692 | INFO     | [payload] control thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:42,056 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:42,151 | INFO     | [data] copytool_out thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:42,292 | INFO     | [data] copytool_in thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:42,473 | INFO     | [payload] failed_post thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:42,507 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:42,545 | INFO     | [job] validate thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:42,587 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:42,644 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:46:43,554 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 06:47:18] 2025-10-22 04:46:47,561 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 06:47:18] 2025-10-22 04:47:10,921 | INFO     | PID=1245223 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 06:47:18] 2025-10-22 04:47:10,921 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 06:47:18] 2025-10-22 04:47:10,921 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 06:47:18] 2025-10-22 04:47:10,921 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 06:47:18] 2025-10-22 04:47:12,924 | INFO     | [monitor] cgroup control has ended
[2025-10-22 06:47:18] 2025-10-22 04:47:13,554 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140404730787648)>', '<ExcThread(monitor, started 140404024407808)>']
[2025-10-22 06:47:18] 2025-10-22 04:47:13,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 06:47:18] 2025-10-22 04:47:13,938 | INFO     | [monitor] control thread has ended
[2025-10-22 06:47:18] 2025-10-22 04:47:18,580 | INFO     | all workflow threads have been joined
[2025-10-22 06:47:18] 2025-10-22 04:47:18,580 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 06:47:18] 2025-10-22 04:47:18,580 | INFO     | traces error code: 0
[2025-10-22 06:47:18] 2025-10-22 04:47:18,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 06:47:18] 2025-10-22 04:47:18,632 [wrapper] ==== pilot stdout END ====
[2025-10-22 06:47:18] 2025-10-22 04:47:18,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 06:47:18] 2025-10-22 04:47:18,637 [wrapper] pilotpid: 1245223
[2025-10-22 06:47:18] 2025-10-22 04:47:18,639 [wrapper] Pilot exit status: 0
[2025-10-22 06:47:18] 2025-10-22 04:47:18,647 [wrapper] pandaids: 6853020668
[2025-10-22 06:47:18] 2025-10-22 04:47:18,665 [wrapper] cleanup supervisor_pilot 1263673 1245224
[2025-10-22 06:47:18] 2025-10-22 04:47:18,667 [wrapper] Test setup, not cleaning
[2025-10-22 06:47:18] 2025-10-22 04:47:18,670 [wrapper] apfmon messages muted
[2025-10-22 06:47:18] 2025-10-22 04:47:18,672 [wrapper] ==== wrapper stdout END ====
[2025-10-22 06:47:18] 2025-10-22 04:47:18,675 [wrapper] ==== wrapper stderr END ====
[2025-10-22 06:47:18]  *** Error codes and diagnostics ***
[2025-10-22 06:47:18]     "exeErrorCode": 0,
[2025-10-22 06:47:18]     "exeErrorDiag": "",
[2025-10-22 06:47:18]     "pilotErrorCode": 0,
[2025-10-22 06:47:18]     "pilotErrorDiag": "",
[2025-10-22 06:47:18]  *** Listing of results directory ***
[2025-10-22 06:47:18] total 436584
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc    557409 Oct 21 10:09 pilot3.tar.gz
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc      5112 Oct 21 10:52 queuedata.json
[2025-10-22 06:47:18] -rwx------ 1 boinc boinc     36292 Oct 21 10:52 runpilot2-wrapper.sh
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc       100 Oct 22 05:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 06:47:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 05:14 run_atlas
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc       105 Oct 22 05:14 job.xml
[2025-10-22 06:47:18] -rw-r--r-- 2 boinc boinc 225611997 Oct 22 05:14 EVNT.46771634._002546.pool.root.1
[2025-10-22 06:47:18] -rw-r--r-- 2 boinc boinc    569678 Oct 22 05:14 input.tar.gz
[2025-10-22 06:47:18] -rw-r--r-- 2 boinc boinc     15120 Oct 22 05:14 start_atlas.sh
[2025-10-22 06:47:18] drwxrwx--x 2 boinc boinc      4096 Oct 22 05:14 shared
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc         0 Oct 22 05:14 boinc_setup_complete
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc      6449 Oct 22 05:14 init_data.xml
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc         0 Oct 22 05:14 boinc_lockfile
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc      2560 Oct 22 05:15 pandaJob.out
[2025-10-22 06:47:18] -rw------- 1 boinc boinc    978440 Oct 22 05:15 agis_schedconf.cvmfs.json
[2025-10-22 06:47:18] -rw------- 1 boinc boinc   1560740 Oct 22 05:15 agis_ddmendpoints.agis.ALL.json
[2025-10-22 06:47:18] drwx------ 5 boinc boinc      4096 Oct 22 05:15 pilot3
[2025-10-22 06:47:18] -rw------- 1 boinc boinc 215456595 Oct 22 06:46 HITS.46771637._064440.pool.root.1
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc       529 Oct 22 06:46 boinc_task_state.xml
[2025-10-22 06:47:18] -rw------- 1 boinc boinc      1017 Oct 22 06:46 memory_monitor_summary.json
[2025-10-22 06:47:18] -rw------- 1 boinc boinc    248147 Oct 22 06:46 log.46771637._064440.job.log.tgz.1
[2025-10-22 06:47:18] -rw------- 1 boinc boinc        95 Oct 22 06:46 pilot_heartbeat.json
[2025-10-22 06:47:18] -rw------- 1 boinc boinc      7770 Oct 22 06:46 heartbeat.json
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc        27 Oct 22 06:47 wrapper_checkpoint.txt
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc      8192 Oct 22 06:47 boinc_mmap_file
[2025-10-22 06:47:18] -rw------- 1 boinc boinc      4752 Oct 22 06:47 pilotlog.txt
[2025-10-22 06:47:18] -rw------- 1 boinc boinc    801281 Oct 22 06:47 log.46771637._064440.job.log.1
[2025-10-22 06:47:18] -rw------- 1 boinc boinc       357 Oct 22 06:47 output.list
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc       620 Oct 22 06:47 runtime_log
[2025-10-22 06:47:18] -rw------- 1 boinc boinc   1064960 Oct 22 06:47 result.tar.gz
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc      8792 Oct 22 06:47 runtime_log.err
[2025-10-22 06:47:18] -rw------- 1 boinc boinc       661 Oct 22 06:47 HzXKDm6HNV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDma11NDmgJpQhn.diag
[2025-10-22 06:47:18] -rw-r--r-- 1 boinc boinc     12644 Oct 22 06:47 stderr.txt
[2025-10-22 06:47:18] HITS file was successfully produced:
[2025-10-22 06:47:18] -rw------- 1 boinc boinc 215456595 Oct 22 06:46 shared/HITS.pool.root.1
[2025-10-22 06:47:18]  *** Contents of shared directory: ***
[2025-10-22 06:47:18] total 432360
[2025-10-22 06:47:18] -rw-r--r-- 2 boinc boinc 225611997 Oct 22 05:14 ATLAS.root_0
[2025-10-22 06:47:18] -rw-r--r-- 2 boinc boinc    569678 Oct 22 05:14 input.tar.gz
[2025-10-22 06:47:18] -rw-r--r-- 2 boinc boinc     15120 Oct 22 05:14 start_atlas.sh
[2025-10-22 06:47:18] -rw------- 1 boinc boinc 215456595 Oct 22 06:46 HITS.pool.root.1
[2025-10-22 06:47:18] -rw------- 1 boinc boinc   1064960 Oct 22 06:47 result.tar.gz
06:47:40 (1241502): run_atlas exited; CPU time 15775.106774
06:47:40 (1241502): called boinc_finish(0)

</stderr_txt>
]]>

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