Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:45:14 (12974): wrapper (7.7.26015): starting
11:45:14 (12974): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 11:45:14] Arguments: --nthreads 8
[2025-10-21 11:45:14] Threads: 8
[2025-10-21 11:45:14] Checking for CVMFS
[2025-10-21 11:45:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 11:45:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 11:45:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 11:45:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 11:45:15] 2.11.2.0 2876 14074 79988 151964 2 57 13613967 20275201 1 130560 0 6744983 99.971 776879 39307 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-21 11:45:15] CVMFS is ok
[2025-10-21 11:45:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 11:45:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 11:45:15] Further information can be found at the LHC@home message board.
[2025-10-21 11:45:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 11:45:15] Checking for apptainer binary...
[2025-10-21 11:45:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 11:45:15] Running /usr/bin/apptainer --version
[2025-10-21 11:45:15] apptainer version 1.3.2-1.el7
[2025-10-21 11:45:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 11:45:17] c-204-40.aglt2.org
[2025-10-21 11:45:17] apptainer works
[2025-10-21 11:45:17] Set ATHENA_PROC_NUMBER=8
[2025-10-21 11:45:17] Set ATHENA_CORE_NUMBER=8
[2025-10-21 11:45:17] Starting ATLAS job with PandaID=6852991601
[2025-10-21 11:45:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 14:05:54]  *** The last 200 lines of the pilot log: ***
[2025-10-21 14:05:54] 2025-10-21 18:04:58,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 14:05:54] 2025-10-21 18:04:58,415 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 14:05:54] 2025-10-21 18:04:58,416 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 14:05:54] 2025-10-21 18:04:58,419 | INFO     | fitting pss+swap vs Time
[2025-10-21 14:05:54] 2025-10-21 18:04:58,419 | INFO     | sum of square deviations: 797291228.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,420 | INFO     | sum of deviations: -646198375.9999962
[2025-10-21 14:05:54] 2025-10-21 18:04:58,420 | INFO     | mean x: 1761065714.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,420 | INFO     | mean y: 2489803.868613139
[2025-10-21 14:05:54] 2025-10-21 18:04:58,420 | INFO     | -- intersect: 1429819949.3045967
[2025-10-21 14:05:54] 2025-10-21 18:04:58,421 | INFO     | intersect: 1429819949.3045967
[2025-10-21 14:05:54] 2025-10-21 18:04:58,421 | INFO     | chi2: 2.2921383710369128
[2025-10-21 14:05:54] 2025-10-21 18:04:58,421 | INFO     | sum of square deviations: 713140813.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,422 | INFO     | sum of deviations: 8381076486.499998
[2025-10-21 14:05:54] 2025-10-21 18:04:58,422 | INFO     | mean x: 1761065561.5
[2025-10-21 14:05:54] 2025-10-21 18:04:58,422 | INFO     | mean y: 2505678.492424242
[2025-10-21 14:05:54] 2025-10-21 18:04:58,422 | INFO     | -- intersect: -20694143425.88658
[2025-10-21 14:05:54] 2025-10-21 18:04:58,423 | INFO     | intersect: -20694143425.88658
[2025-10-21 14:05:54] 2025-10-21 18:04:58,423 | INFO     | chi2: 1.5267248319725635
[2025-10-21 14:05:54] 2025-10-21 18:04:58,423 | INFO     | current chi2=1.5267248319725635 (change=33.392990088905194 %)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,423 | INFO     | sum of square deviations: 635130048.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,424 | INFO     | sum of deviations: 8179354885.000001
[2025-10-21 14:05:54] 2025-10-21 18:04:58,424 | INFO     | mean x: 1761065409.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,424 | INFO     | mean y: 2505283.9842519686
[2025-10-21 14:05:54] 2025-10-21 18:04:58,424 | INFO     | -- intersect: -22676911319.383053
[2025-10-21 14:05:54] 2025-10-21 18:04:58,424 | INFO     | intersect: -22676911319.383053
[2025-10-21 14:05:54] 2025-10-21 18:04:58,425 | INFO     | chi2: 1.5287734724095154
[2025-10-21 14:05:54] 2025-10-21 18:04:58,425 | INFO     | current chi2=1.5287734724095154 (change=-0.13418530923513405 %)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,425 | INFO     | right removable region: 126
[2025-10-21 14:05:54] 2025-10-21 18:04:58,425 | INFO     | sum of square deviations: 713140813.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,426 | INFO     | sum of deviations: -19773564891.5
[2025-10-21 14:05:54] 2025-10-21 18:04:58,426 | INFO     | mean x: 1761065866.5
[2025-10-21 14:05:54] 2025-10-21 18:04:58,426 | INFO     | mean y: 2523845.6893939395
[2025-10-21 14:05:54] 2025-10-21 18:04:58,426 | INFO     | -- intersect: 48832361592.534805
[2025-10-21 14:05:54] 2025-10-21 18:04:58,426 | INFO     | intersect: 48832361592.534805
[2025-10-21 14:05:54] 2025-10-21 18:04:58,427 | INFO     | chi2: 0.9390888723457266
[2025-10-21 14:05:54] 2025-10-21 18:04:58,427 | INFO     | current chi2=0.9390888723457266 (change=59.030009522465974 %)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,427 | INFO     | sum of square deviations: 635130048.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,428 | INFO     | sum of deviations: -21831995831.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,428 | INFO     | mean x: 1761066019.0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,428 | INFO     | mean y: 2527869.6456692913
[2025-10-21 14:05:54] 2025-10-21 18:04:58,428 | INFO     | -- intersect: 60537509809.161415
[2025-10-21 14:05:54] 2025-10-21 18:04:58,428 | INFO     | intersect: 60537509809.161415
[2025-10-21 14:05:54] 2025-10-21 18:04:58,428 | INFO     | chi2: 0.9114950297326061
[2025-10-21 14:05:54] 2025-10-21 18:04:58,428 | INFO     | current chi2=0.9114950297326061 (change=2.938363282294519 %)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,429 | INFO     | left removable region: 20
[2025-10-21 14:05:54] 2025-10-21 18:04:58,429 | INFO     | sum of square deviations: 369281342.5
[2025-10-21 14:05:54] 2025-10-21 18:04:58,429 | INFO     | sum of deviations: -6135397445.999999
[2025-10-21 14:05:54] 2025-10-21 18:04:58,429 | INFO     | mean x: 1761065988.5
[2025-10-21 14:05:54] 2025-10-21 18:04:58,430 | INFO     | mean y: 2532231.150943396
[2025-10-21 14:05:54] 2025-10-21 18:04:58,430 | INFO     | -- intersect: 29261632338.76162
[2025-10-21 14:05:54] 2025-10-21 18:04:58,430 | INFO     | intersect: 29261632338.76162
[2025-10-21 14:05:54] 2025-10-21 18:04:58,430 | INFO     | chi2: 0.07973092820298372
[2025-10-21 14:05:54] 2025-10-21 18:04:58,430 | INFO     | -- intersect: 29261632338.76162
[2025-10-21 14:05:54] 2025-10-21 18:04:58,430 | INFO     | current memory leak: -16.61 B/s (using 106 data points, chi2=0.08)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,431 | INFO     | could have reported an average CPU frequency of 1995 MHz (8 samples)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,431 | INFO     | ..............................
[2025-10-21 14:05:54] 2025-10-21 18:04:58,431 | INFO     | . Timing measurements:
[2025-10-21 14:05:54] 2025-10-21 18:04:58,431 | INFO     | . get job = 0 s
[2025-10-21 14:05:54] 2025-10-21 18:04:58,431 | INFO     | . initial setup = 2 s
[2025-10-21 14:05:54] 2025-10-21 18:04:58,431 | INFO     | . payload setup = 8 s
[2025-10-21 14:05:54] 2025-10-21 18:04:58,431 | INFO     | . stage-in = 0 s
[2025-10-21 14:05:54] 2025-10-21 18:04:58,432 | INFO     | . payload execution = 8321 s
[2025-10-21 14:05:54] 2025-10-21 18:04:58,432 | INFO     | . stage-out = 1 s
[2025-10-21 14:05:54] 2025-10-21 18:04:58,432 | INFO     | . log creation = 0 s
[2025-10-21 14:05:54] 2025-10-21 18:04:58,432 | INFO     | ..............................
[2025-10-21 14:05:54] 2025-10-21 18:04:58,524 | INFO     | 
[2025-10-21 14:05:54] 2025-10-21 18:04:58,525 | INFO     | job summary report
[2025-10-21 14:05:54] 2025-10-21 18:04:58,525 | INFO     | --------------------------------------------------
[2025-10-21 14:05:54] 2025-10-21 18:04:58,525 | INFO     | PanDA job id: 6852991601
[2025-10-21 14:05:54] 2025-10-21 18:04:58,525 | INFO     | task id: 46771637
[2025-10-21 14:05:54] 2025-10-21 18:04:58,525 | INFO     | errors: (none)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,525 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 14:05:54] 2025-10-21 18:04:58,526 | INFO     | pilot state: finished 
[2025-10-21 14:05:54] 2025-10-21 18:04:58,526 | INFO     | transexitcode: 0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,526 | INFO     | exeerrorcode: 0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,526 | INFO     | exeerrordiag: 
[2025-10-21 14:05:54] 2025-10-21 18:04:58,526 | INFO     | exitcode: 0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,526 | INFO     | exitmsg: OK
[2025-10-21 14:05:54] 2025-10-21 18:04:58,527 | INFO     | cpuconsumptiontime: 60610 s
[2025-10-21 14:05:54] 2025-10-21 18:04:58,527 | INFO     | nevents: 400
[2025-10-21 14:05:54] 2025-10-21 18:04:58,527 | INFO     | neventsw: 0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,527 | INFO     | pid: 23597
[2025-10-21 14:05:54] 2025-10-21 18:04:58,527 | INFO     | pgrp: 23597
[2025-10-21 14:05:54] 2025-10-21 18:04:58,528 | INFO     | corecount: 8
[2025-10-21 14:05:54] 2025-10-21 18:04:58,528 | INFO     | event service: False
[2025-10-21 14:05:54] 2025-10-21 18:04:58,528 | INFO     | sizes: {0: 2348931, 6: 2349193, 11: 2349221, 8333: 2377019, 8336: 2386045, 8338: 2386101, 8347: 2386423}
[2025-10-21 14:05:54] 2025-10-21 18:04:58,528 | INFO     | --------------------------------------------------
[2025-10-21 14:05:54] 2025-10-21 18:04:58,528 | INFO     | 
[2025-10-21 14:05:54] 2025-10-21 18:04:58,528 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-21 14:05:54] 2025-10-21 18:04:58,558 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,558 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,558 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,559 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,559 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,559 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,559 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,559 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,561 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 14:05:54] 2025-10-21 18:04:58,562 | INFO     | job 6852991601 has completed (purged errors)
[2025-10-21 14:05:54] 2025-10-21 18:04:58,562 | INFO     | overall cleanup function is called
[2025-10-21 14:05:54] 2025-10-21 18:04:59,570 | INFO     | --- collectZombieJob: --- 10, [23597]
[2025-10-21 14:05:54] 2025-10-21 18:04:59,571 | INFO     | zombie collector waiting for pid 23597
[2025-10-21 14:05:54] 2025-10-21 18:04:59,577 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 14:05:54] 2025-10-21 18:04:59,577 | INFO     | collected zombie processes
[2025-10-21 14:05:54] 2025-10-21 18:04:59,577 | INFO     | will attempt to kill all subprocesses of pid=23597
[2025-10-21 14:05:54] 2025-10-21 18:04:59,673 | INFO     | process IDs to be killed: [23597] (in reverse order)
[2025-10-21 14:05:54] 2025-10-21 18:04:59,729 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 14:05:54] 2025-10-21 18:04:59,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 14:05:54] 2025-10-21 18:04:59,735 | INFO     | did not find any defunct processes belonging to 23597
[2025-10-21 14:05:54] 2025-10-21 18:04:59,738 | INFO     | did not find any defunct processes belonging to 23597
[2025-10-21 14:05:54] 2025-10-21 18:04:59,738 | INFO     | ready for new job
[2025-10-21 14:05:54] 2025-10-21 18:04:59,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 14:05:54] 2025-10-21 18:04:59,740 | INFO     | ***************************************
[2025-10-21 14:05:54] 2025-10-21 18:04:59,740 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 14:05:54] 2025-10-21 18:04:59,740 | INFO     | ***************************************
[2025-10-21 14:05:54] 2025-10-21 18:04:59,740 | INFO     | 
[2025-10-21 14:05:54] 2025-10-21 18:04:59,741 | INFO     | architecture information:
[2025-10-21 14:05:54] 2025-10-21 18:04:59,742 | INFO     | executing command: cat /etc/os-release
[2025-10-21 14:05:54] 2025-10-21 18:04:59,759 | INFO     | cat /etc/os-release:
[2025-10-21 14:05:54] NAME="CentOS Linux"
[2025-10-21 14:05:54] VERSION="7 (Core)"
[2025-10-21 14:05:54] ID="centos"
[2025-10-21 14:05:54] ID_LIKE="rhel fedora"
[2025-10-21 14:05:54] VERSION_ID="7"
[2025-10-21 14:05:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 14:05:54] ANSI_COLOR="0;31"
[2025-10-21 14:05:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 14:05:54] HOME_URL="https://www.centos.org/"
[2025-10-21 14:05:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 14:05:54] 
[2025-10-21 14:05:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 14:05:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 14:05:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 14:05:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 14:05:54] 
[2025-10-21 14:05:54] 2025-10-21 18:04:59,759 | INFO     | ***************************************
[2025-10-21 14:05:54] 2025-10-21 18:05:00,263 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-21 14:05:54] 2025-10-21 18:05:00,281 | INFO     | sufficient remaining disk space (18531483648 B)
[2025-10-21 14:05:54] 2025-10-21 18:05:00,282 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 14:05:54] 2025-10-21 18:05:00,282 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 14:05:54] 2025-10-21 18:05:00,283 | INFO     | update_server=False
[2025-10-21 14:05:54] 2025-10-21 18:05:00,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 14:05:54] 2025-10-21 18:05:00,284 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 14:05:54] 2025-10-21 18:05:00,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 14:05:54] 2025-10-21 18:05:00,493 | INFO     | all data control threads have been joined
[2025-10-21 14:05:54] 2025-10-21 18:05:00,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 14:05:54] 2025-10-21 18:05:00,562 | INFO     | aborting loop
[2025-10-21 14:05:54] 2025-10-21 18:05:00,599 | INFO     | all payload control threads have been joined
[2025-10-21 14:05:54] 2025-10-21 18:05:00,837 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 14:05:54] 2025-10-21 18:05:01,288 | INFO     | [job] queue monitor thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:01,289 | INFO     | [job] retrieve thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:01,319 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:01,390 | INFO     | all job control threads have been joined
[2025-10-21 14:05:54] 2025-10-21 18:05:01,499 | INFO     | [data] control thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:01,565 | INFO     | [job] job monitor thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:01,602 | INFO     | [payload] control thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:01,823 | INFO     | [job] validate thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:02,243 | INFO     | [payload] validate_post thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:02,278 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:02,303 | INFO     | [data] copytool_in thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:02,395 | INFO     | [job] control thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:02,666 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:02,765 | INFO     | [payload] failed_post thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:02,843 | INFO     | [data] copytool_out thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:04,321 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:11,068 | INFO     | job.realtimelogging is not enabled
[2025-10-21 14:05:54] 2025-10-21 18:05:12,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 14:05:54] 2025-10-21 18:05:30,715 | INFO     | PID=17061 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 14:05:54] 2025-10-21 18:05:30,716 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 14:05:54] 2025-10-21 18:05:30,716 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 14:05:54] 2025-10-21 18:05:30,716 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 14:05:54] 2025-10-21 18:05:47,330 | INFO     | [monitor] cgroup control has ended
[2025-10-21 14:05:54] 2025-10-21 18:05:48,758 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140313598527296)>', '<ExcThread(monitor, started 140312412415744)>']
[2025-10-21 14:05:54] 2025-10-21 18:05:48,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 14:05:54] 2025-10-21 18:05:48,804 | INFO     | [monitor] control thread has ended
[2025-10-21 14:05:54] 2025-10-21 18:05:53,783 | INFO     | all workflow threads have been joined
[2025-10-21 14:05:54] 2025-10-21 18:05:53,783 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 14:05:54] 2025-10-21 18:05:53,784 | INFO     | traces error code: 0
[2025-10-21 14:05:54] 2025-10-21 18:05:53,784 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 14:05:54] 2025-10-21 18:05:53,897 [wrapper] ==== pilot stdout END ====
[2025-10-21 14:05:54] 2025-10-21 18:05:53,902 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 14:05:54] 2025-10-21 18:05:53,906 [wrapper] pilotpid: 17061
[2025-10-21 14:05:54] 2025-10-21 18:05:53,911 [wrapper] Pilot exit status: 0
[2025-10-21 14:05:54] 2025-10-21 18:05:53,930 [wrapper] pandaids: 6852991601
[2025-10-21 14:05:54] 2025-10-21 18:05:53,981 [wrapper] cleanup supervisor_pilot  1965 17062
[2025-10-21 14:05:54] 2025-10-21 18:05:53,985 [wrapper] Test setup, not cleaning
[2025-10-21 14:05:54] 2025-10-21 18:05:53,990 [wrapper] apfmon messages muted
[2025-10-21 14:05:54] 2025-10-21 18:05:53,994 [wrapper] ==== wrapper stdout END ====
[2025-10-21 14:05:54] 2025-10-21 18:05:53,999 [wrapper] ==== wrapper stderr END ====
[2025-10-21 14:05:54]  *** Error codes and diagnostics ***
[2025-10-21 14:05:54]     "exeErrorCode": 0,
[2025-10-21 14:05:54]     "exeErrorDiag": "",
[2025-10-21 14:05:54]     "pilotErrorCode": 0,
[2025-10-21 14:05:54]     "pilotErrorDiag": "",
[2025-10-21 14:05:54]  *** Listing of results directory ***
[2025-10-21 14:05:54] total 426660
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas    557409 Oct 21 03:34 pilot3.tar.gz
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas      5112 Oct 21 04:05 queuedata.json
[2025-10-21 14:05:54] -rwx------ 1 boincer umatlas     36292 Oct 21 04:05 runpilot2-wrapper.sh
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas       100 Oct 21 11:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 14:05:54] -rwxr-xr-x 1 boincer umatlas      7986 Oct 21 11:45 run_atlas
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas       105 Oct 21 11:45 job.xml
[2025-10-21 14:05:54] -rw-r--r-- 2 boincer umatlas 226287964 Oct 21 11:45 EVNT.46771634._002516.pool.root.1
[2025-10-21 14:05:54] -rw-r--r-- 2 boincer umatlas     15120 Oct 21 11:45 start_atlas.sh
[2025-10-21 14:05:54] drwxrwx--x 2 boincer umatlas      4096 Oct 21 11:45 shared
[2025-10-21 14:05:54] -rw-r--r-- 2 boincer umatlas    569679 Oct 21 11:45 input.tar.gz
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas         0 Oct 21 11:45 boinc_lockfile
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas      2560 Oct 21 11:45 pandaJob.out
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas    978873 Oct 21 11:45 agis_schedconf.cvmfs.json
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas   1560740 Oct 21 11:45 agis_ddmendpoints.agis.ALL.json
[2025-10-21 14:05:54] drwx------ 5 boincer umatlas      4096 Oct 21 11:45 pilot3
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas      5909 Oct 21 14:03 init_data.xml
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas 203608965 Oct 21 14:04 HITS.46771637._063699.pool.root.1
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas       529 Oct 21 14:04 boinc_task_state.xml
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas        95 Oct 21 14:04 pilot_heartbeat.json
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas      1051 Oct 21 14:04 memory_monitor_summary.json
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas    376690 Oct 21 14:04 log.46771637._063699.job.log.tgz.1
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas      7851 Oct 21 14:04 heartbeat.json
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas        27 Oct 21 14:05 wrapper_checkpoint.txt
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas      8192 Oct 21 14:05 boinc_mmap_file
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas      4818 Oct 21 14:05 pilotlog.txt
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas   1172069 Oct 21 14:05 log.46771637._063699.job.log.1
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas       357 Oct 21 14:05 output.list
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas       620 Oct 21 14:05 runtime_log
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas   1566720 Oct 21 14:05 result.tar.gz
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas      8703 Oct 21 14:05 runtime_log.err
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas       660 Oct 21 14:05 i47LDmHYMV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmg8eMDmSDaQEn.diag
[2025-10-21 14:05:54] -rw-r--r-- 1 boincer umatlas     20848 Oct 21 14:05 stderr.txt
[2025-10-21 14:05:54] HITS file was successfully produced:
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas 203608965 Oct 21 14:04 shared/HITS.pool.root.1
[2025-10-21 14:05:54]  *** Contents of shared directory: ***
[2025-10-21 14:05:54] total 421940
[2025-10-21 14:05:54] -rw-r--r-- 2 boincer umatlas 226287964 Oct 21 11:45 ATLAS.root_0
[2025-10-21 14:05:54] -rw-r--r-- 2 boincer umatlas     15120 Oct 21 11:45 start_atlas.sh
[2025-10-21 14:05:54] -rw-r--r-- 2 boincer umatlas    569679 Oct 21 11:45 input.tar.gz
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas 203608965 Oct 21 14:04 HITS.pool.root.1
[2025-10-21 14:05:54] -rw------- 1 boincer umatlas   1566720 Oct 21 14:05 result.tar.gz
14:05:55 (12974): run_atlas exited; CPU time 60556.378625
14:05:55 (12974): called boinc_finish(0)

</stderr_txt>
]]>

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