Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
12:33:54 (4095064): wrapper (7.7.26015): starting
12:33:54 (4095064): wrapper: running run_atlas (--nthreads 12)
[2025-10-21 12:33:54] Arguments: --nthreads 12
[2025-10-21 12:33:54] Threads: 12
[2025-10-21 12:33:54] Checking for CVMFS
[2025-10-21 12:33:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 12:33:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 12:33:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 12:33:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 12:33:55] 2.13.2.0 1701778 1158 56516 151966 2 61 8716167 16777217 916 130560 0 4196952 99.997 41854 1472 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-21 12:33:55] CVMFS is ok
[2025-10-21 12:33:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 12:33:55] Checking for apptainer binary...
[2025-10-21 12:33:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 12:33:55] Running /usr/bin/apptainer --version
[2025-10-21 12:33:55] apptainer version 1.3.0-bp160.1.36
[2025-10-21 12:33:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 12:33:55] boinc-runner
[2025-10-21 12:33:55] apptainer works
[2025-10-21 12:33:55] Set ATHENA_PROC_NUMBER=12
[2025-10-21 12:33:55] Set ATHENA_CORE_NUMBER=12
[2025-10-21 12:33:55] Starting ATLAS job with PandaID=6848030214
[2025-10-21 12:33:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 13:06:10]  *** The last 200 lines of the pilot log: ***
[2025-10-21 13:06:10]  status_code=0
[2025-10-21 13:06:10]  storage_token=
[2025-10-21 13:06:10]  surl=/var/lib/boinc/slots/3/PanDA_Pilot-6848030214/log.46771637._040927.job.log.tgz.1
[2025-10-21 13:06:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/aa/log.46771637._040927.job.log.tgz.1
[2025-10-21 13:06:10]  workdir=None
[2025-10-21 13:06:10] ]
[2025-10-21 13:06:10] 2025-10-21 18:04:59,829 | INFO     | transferring file log.46771637._040927.job.log.tgz.1 from /var/lib/boinc/slots/3/PanDA_Pilot-6848030214/log.46771637._040927.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-21 13:06:10] 2025-10-21 18:04:59,829 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/3/PanDA_Pilot-6848030214/log.46771637._040927.job.log.tgz.1 /var/lib/boinc/slots/3/log.46771637._040927.job
[2025-10-21 13:06:10] 2025-10-21 18:04:59,844 | INFO     | adding to output.list: log.46771637._040927.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/aa/log.46771637._040927.job.log.tg
[2025-10-21 13:06:10] 2025-10-21 18:04:59,845 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-21 13:06:10] 2025-10-21 18:04:59,845 | INFO     | summary of transferred files:
[2025-10-21 13:06:10] 2025-10-21 18:04:59,845 | INFO     |  -- lfn=log.46771637._040927.job.log.tgz.1, status_code=0, status=transferred
[2025-10-21 13:06:10] 2025-10-21 18:04:59,845 | INFO     | stage-out finished correctly
[2025-10-21 13:06:10] 2025-10-21 18:05:00,524 | INFO     | time since job start (1859s) is within the limit (172800.0s)
[2025-10-21 13:06:10] 2025-10-21 18:05:01,626 | INFO     | PID=4098964 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-21 13:06:10] 2025-10-21 18:05:01,626 | INFO     | .. there are 2 such processes running
[2025-10-21 13:06:10] 2025-10-21 18:05:01,685 | WARNING  | process 4105835 can no longer be monitored (due to stat problems) - aborting
[2025-10-21 13:06:10] 2025-10-21 18:05:01,685 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6848030214/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 13:06:10] 2025-10-21 18:05:01,745 | INFO     | number of running child processes to parent process 4105835: 1
[2025-10-21 13:06:10] 2025-10-21 18:05:01,745 | INFO     | maximum number of monitored processes: 6
[2025-10-21 13:06:10] 2025-10-21 18:05:02,626 | INFO     | time since job start (1861s) is within the limit (172800.0s)
[2025-10-21 13:06:10] 2025-10-21 18:05:03,174 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-21 13:06:10] 2025-10-21 18:05:03,202 | INFO     | job 6848030214 has state=finished
[2025-10-21 13:06:10] 2025-10-21 18:05:03,203 | INFO     | preparing for final server update for job 6848030214 in state='finished'
[2025-10-21 13:06:10] 2025-10-21 18:05:03,203 | INFO     | this job has now completed (state=finished)
[2025-10-21 13:06:10] 2025-10-21 18:05:03,203 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-21 13:06:10] 2025-10-21 18:05:03,203 | INFO     | log transfer has been attempted: DONE
[2025-10-21 13:06:10] 2025-10-21 18:05:03,203 | INFO     | job 6848030214 has finished - writing final server update
[2025-10-21 13:06:10] 2025-10-21 18:05:03,203 | INFO     | total number of processed events: 400 (read)
[2025-10-21 13:06:10] 2025-10-21 18:05:03,204 | INFO     | executing command: lscpu
[2025-10-21 13:06:10] 2025-10-21 18:05:03,225 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-21 13:06:10] 2025-10-21 18:05:04,248 | INFO     | monitor loop #144: job 0:6848030214 is in state 'finished'
[2025-10-21 13:06:10] 2025-10-21 18:05:04,249 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 13:06:10] 2025-10-21 18:05:04,632 | INFO     | time since job start (1863s) is within the limit (172800.0s)
[2025-10-21 13:06:10] 2025-10-21 18:05:05,052 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-21 13:06:10] 2025-10-21 18:05:05,054 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3723.62240625
[2025-10-21 13:06:10] 2025-10-21 18:05:05,056 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6848030214/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 13:06:10] 2025-10-21 18:05:05,056 | INFO     | extracted standard info from prmon json
[2025-10-21 13:06:10] 2025-10-21 18:05:05,056 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 13:06:10] 2025-10-21 18:05:05,056 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 13:06:10] 2025-10-21 18:05:05,056 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 13:06:10] 2025-10-21 18:05:05,056 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | fitting pss+swap vs Time
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | sum of square deviations: 4279150.0
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | sum of deviations: -507405472.5
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | mean x: 1761069065.5
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | mean y: 2951759.375
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | -- intersect: 208823881449.88852
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | intersect: 208823881449.88852
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | chi2: 0.005263065255112579
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | -- intersect: 208823881449.88852
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | current memory leak: -118.58 B/s (using 24 data points, chi2=0.01)
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | could have reported an average CPU frequency of 3965 MHz (5 samples)
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | ..............................
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | . Timing measurements:
[2025-10-21 13:06:10] 2025-10-21 18:05:05,057 | INFO     | . get job = 0 s
[2025-10-21 13:06:10] 2025-10-21 18:05:05,058 | INFO     | . initial setup = 2 s
[2025-10-21 13:06:10] 2025-10-21 18:05:05,058 | INFO     | . payload setup = 2 s
[2025-10-21 13:06:10] 2025-10-21 18:05:05,058 | INFO     | . stage-in = 0 s
[2025-10-21 13:06:10] 2025-10-21 18:05:05,058 | INFO     | . payload execution = 1839 s
[2025-10-21 13:06:10] 2025-10-21 18:05:05,058 | INFO     | . stage-out = 0 s
[2025-10-21 13:06:10] 2025-10-21 18:05:05,058 | INFO     | . log creation = 0 s
[2025-10-21 13:06:10] 2025-10-21 18:05:05,058 | INFO     | ..............................
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | 
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | job summary report
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | --------------------------------------------------
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | PanDA job id: 6848030214
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | task id: 46771637
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | errors: (none)
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | pilot state: finished 
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | transexitcode: 0
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | exeerrorcode: 0
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | exeerrordiag: 
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | exitcode: 0
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | exitmsg: OK
[2025-10-21 13:06:10] 2025-10-21 18:05:05,086 | INFO     | cpuconsumptiontime: 19915 s
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | nevents: 400
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | neventsw: 0
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | pid: 4105835
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | pgrp: 4105835
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | corecount: 12
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | event service: False
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | sizes: {0: 2348700, 1: 2348955, 3: 2349217, 11: 2349245, 1845: 2374199, 1846: 2383197, 1849: 2383381, 1851: 2383607}
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | --------------------------------------------------
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | 
[2025-10-21 13:06:10] 2025-10-21 18:05:05,087 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,096 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | job 6848030214 has completed (purged errors)
[2025-10-21 13:06:10] 2025-10-21 18:05:05,097 | INFO     | overall cleanup function is called
[2025-10-21 13:06:10] 2025-10-21 18:05:06,104 | INFO     | --- collectZombieJob: --- 10, [4105835]
[2025-10-21 13:06:10] 2025-10-21 18:05:06,105 | INFO     | zombie collector waiting for pid 4105835
[2025-10-21 13:06:10] 2025-10-21 18:05:06,105 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 13:06:10] 2025-10-21 18:05:06,105 | INFO     | collected zombie processes
[2025-10-21 13:06:10] 2025-10-21 18:05:06,105 | INFO     | will attempt to kill all subprocesses of pid=4105835
[2025-10-21 13:06:10] 2025-10-21 18:05:06,182 | INFO     | process IDs to be killed: [4105835] (in reverse order)
[2025-10-21 13:06:10] 2025-10-21 18:05:06,216 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 13:06:10] 2025-10-21 18:05:06,216 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 13:06:10] 2025-10-21 18:05:06,220 | INFO     | did not find any defunct processes belonging to 4105835
[2025-10-21 13:06:10] 2025-10-21 18:05:06,222 | INFO     | did not find any defunct processes belonging to 4105835
[2025-10-21 13:06:10] 2025-10-21 18:05:06,223 | INFO     | ready for new job
[2025-10-21 13:06:10] 2025-10-21 18:05:06,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 13:06:10] 2025-10-21 18:05:06,224 | INFO     | ***************************************
[2025-10-21 13:06:10] 2025-10-21 18:05:06,224 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 13:06:10] 2025-10-21 18:05:06,224 | INFO     | ***************************************
[2025-10-21 13:06:10] 2025-10-21 18:05:06,224 | INFO     | 
[2025-10-21 13:06:10] 2025-10-21 18:05:06,225 | INFO     | architecture information:
[2025-10-21 13:06:10] 2025-10-21 18:05:06,225 | INFO     | executing command: cat /etc/os-release
[2025-10-21 13:06:10] 2025-10-21 18:05:06,234 | INFO     | cat /etc/os-release:
[2025-10-21 13:06:10] NAME="CentOS Linux"
[2025-10-21 13:06:10] VERSION="7 (Core)"
[2025-10-21 13:06:10] ID="centos"
[2025-10-21 13:06:10] ID_LIKE="rhel fedora"
[2025-10-21 13:06:10] VERSION_ID="7"
[2025-10-21 13:06:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 13:06:10] ANSI_COLOR="0;31"
[2025-10-21 13:06:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 13:06:10] HOME_URL="https://www.centos.org/"
[2025-10-21 13:06:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 13:06:10] 
[2025-10-21 13:06:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 13:06:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 13:06:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 13:06:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 13:06:10] 
[2025-10-21 13:06:10] 2025-10-21 18:05:06,234 | INFO     | ***************************************
[2025-10-21 13:06:10] 2025-10-21 18:05:06,736 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-21 13:06:10] 2025-10-21 18:05:06,746 | INFO     | sufficient remaining disk space (3867388411904 B)
[2025-10-21 13:06:10] 2025-10-21 18:05:06,747 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 13:06:10] 2025-10-21 18:05:06,747 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 13:06:10] 2025-10-21 18:05:06,747 | INFO     | update_server=False
[2025-10-21 13:06:10] 2025-10-21 18:05:06,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 13:06:10] 2025-10-21 18:05:06,747 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 13:06:10] 2025-10-21 18:05:06,752 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-21 13:06:10] 2025-10-21 18:05:06,752 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-21 13:06:10] 2025-10-21 18:05:06,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 13:06:10] 2025-10-21 18:05:06,752 | INFO     | will abort loop
[2025-10-21 13:06:10] 2025-10-21 18:05:06,945 | INFO     | all data control threads have been joined
[2025-10-21 13:06:10] 2025-10-21 18:05:07,523 | INFO     | all payload control threads have been joined
[2025-10-21 13:06:10] 2025-10-21 18:05:07,717 | INFO     | all job control threads have been joined
[2025-10-21 13:06:10] 2025-10-21 18:05:07,751 | INFO     | [job] queue monitor thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:07,752 | INFO     | [job] retrieve thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:07,757 | INFO     | [job] job monitor thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:07,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 13:06:10] 2025-10-21 18:05:07,943 | INFO     | [payload] failed_post thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:07,951 | INFO     | [data] control thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:07,980 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:08,408 | INFO     | [job] validate thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:08,467 | INFO     | [payload] validate_post thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:08,527 | INFO     | [payload] control thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:08,574 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:08,654 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:08,722 | INFO     | [job] control thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:08,965 | INFO     | [data] copytool_in thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:09,127 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:09,207 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 13:06:10] 2025-10-21 18:05:09,919 | INFO     | [data] copytool_out thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:13,212 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 13:06:10] 2025-10-21 18:05:37,802 | INFO     | PID=4098964 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-21 13:06:10] 2025-10-21 18:05:37,802 | INFO     | .. there are 2 such processes running
[2025-10-21 13:06:10] 2025-10-21 18:05:37,803 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 13:06:10] 2025-10-21 18:05:37,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 13:06:10] 2025-10-21 18:05:37,803 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 13:06:10] 2025-10-21 18:06:04,013 | INFO     | [monitor] cgroup control has ended
[2025-10-21 13:06:10] 2025-10-21 18:06:05,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140502281615168)>', '<ExcThread(monitor, started 140501625841408)>']
[2025-10-21 13:06:10] 2025-10-21 18:06:05,942 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 13:06:10] 2025-10-21 18:06:05,942 | INFO     | [monitor] control thread has ended
[2025-10-21 13:06:10] 2025-10-21 18:06:10,089 | INFO     | all workflow threads have been joined
[2025-10-21 13:06:10] 2025-10-21 18:06:10,089 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 13:06:10] 2025-10-21 18:06:10,090 | INFO     | traces error code: 0
[2025-10-21 13:06:10] 2025-10-21 18:06:10,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 13:06:10] 2025-10-21 18:06:10,175 [wrapper] ==== pilot stdout END ====
[2025-10-21 13:06:10] 2025-10-21 18:06:10,176 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 13:06:10] 2025-10-21 18:06:10,178 [wrapper] pilotpid: 4098964
[2025-10-21 13:06:10] 2025-10-21 18:06:10,180 [wrapper] Pilot exit status: 0
[2025-10-21 13:06:10] 2025-10-21 18:06:10,184 [wrapper] pandaids: 6848030214
[2025-10-21 13:06:10] 2025-10-21 18:06:10,204 [wrapper] cleanup supervisor_pilot 4156865 4098965
[2025-10-21 13:06:10] 2025-10-21 18:06:10,205 [wrapper] Test setup, not cleaning
[2025-10-21 13:06:10] 2025-10-21 18:06:10,207 [wrapper] apfmon messages muted
[2025-10-21 13:06:10] 2025-10-21 18:06:10,209 [wrapper] ==== wrapper stdout END ====
[2025-10-21 13:06:10] 2025-10-21 18:06:10,211 [wrapper] ==== wrapper stderr END ====
[2025-10-21 13:06:10]  *** Error codes and diagnostics ***
[2025-10-21 13:06:10]     "exeErrorCode": 0,
[2025-10-21 13:06:10]     "exeErrorDiag": "",
[2025-10-21 13:06:10]     "pilotErrorCode": 0,
[2025-10-21 13:06:10]     "pilotErrorDiag": "",
[2025-10-21 13:06:10]  *** Listing of results directory ***
[2025-10-21 13:06:10] total 426380
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc    557409 Oct 18 04:40 pilot3.tar.gz
[2025-10-21 13:06:10] -rwx------. 1 boinc boinc     36292 Oct 18 04:45 runpilot2-wrapper.sh
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc      5112 Oct 18 04:45 queuedata.json
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc       100 Oct 21 12:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 13:06:10] -rwxr-xr-x. 1 boinc boinc      7986 Oct 21 12:33 run_atlas
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc       105 Oct 21 12:33 job.xml
[2025-10-21 13:06:10] -rw-r--r--. 2 boinc boinc 228967208 Oct 21 12:33 EVNT.46771634._000780.pool.root.1
[2025-10-21 13:06:10] -rw-r--r--. 2 boinc boinc     15120 Oct 21 12:33 start_atlas.sh
[2025-10-21 13:06:10] drwxrwx--x. 1 boinc boinc        76 Oct 21 12:33 shared
[2025-10-21 13:06:10] -rw-r--r--. 2 boinc boinc    569667 Oct 21 12:33 input.tar.gz
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc     10052 Oct 21 12:33 init_data.xml
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc         0 Oct 21 12:33 boinc_setup_complete
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc         0 Oct 21 12:33 boinc_lockfile
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc      2557 Oct 21 12:33 pandaJob.out
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc    978456 Oct 21 12:33 agis_schedconf.cvmfs.json
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc   1560740 Oct 21 12:34 agis_ddmendpoints.agis.ALL.json
[2025-10-21 13:06:10] drwx------. 1 boinc boinc       414 Oct 21 12:34 pilot3
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc 202437051 Oct 21 13:04 HITS.46771637._040927.pool.root.1
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc       530 Oct 21 13:04 boinc_task_state.xml
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc      1033 Oct 21 13:04 memory_monitor_summary.json
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc    345451 Oct 21 13:04 log.46771637._040927.job.log.tgz.1
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc      7796 Oct 21 13:05 heartbeat.json
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc        95 Oct 21 13:05 pilot_heartbeat.json
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc        27 Oct 21 13:06 wrapper_checkpoint.txt
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc      8192 Oct 21 13:06 boinc_mmap_file
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc      5011 Oct 21 13:06 pilotlog.txt
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc    313412 Oct 21 13:06 log.46771637._040927.job.log.1
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc       357 Oct 21 13:06 output.list
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc       620 Oct 21 13:06 runtime_log
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc    675840 Oct 21 13:06 result.tar.gz
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc       652 Oct 21 13:06 yEvKDmYgIU8n9Rq4apOajLDm4fhM0noT9bVof3QYDmUwbMDmGpLWDo.diag
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc      8727 Oct 21 13:06 runtime_log.err
[2025-10-21 13:06:10] -rw-r--r--. 1 boinc boinc     21865 Oct 21 13:06 stderr.txt
[2025-10-21 13:06:10] HITS file was successfully produced:
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc 202437051 Oct 21 13:04 shared/HITS.pool.root.1
[2025-10-21 13:06:10]  *** Contents of shared directory: ***
[2025-10-21 13:06:10] total 422536
[2025-10-21 13:06:10] -rw-r--r--. 2 boinc boinc 228967208 Oct 21 12:33 ATLAS.root_0
[2025-10-21 13:06:10] -rw-r--r--. 2 boinc boinc     15120 Oct 21 12:33 start_atlas.sh
[2025-10-21 13:06:10] -rw-r--r--. 2 boinc boinc    569667 Oct 21 12:33 input.tar.gz
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc 202437051 Oct 21 13:04 HITS.pool.root.1
[2025-10-21 13:06:10] -rw-------. 1 boinc boinc    675840 Oct 21 13:06 result.tar.gz
13:06:11 (4095064): run_atlas exited; CPU time 19922.530727
13:06:11 (4095064): called boinc_finish(0)

</stderr_txt>
]]>

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