Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:07:48 (2043311): wrapper (7.7.26015): starting
03:07:48 (2043311): wrapper: running run_atlas (--nthreads 4)
[2025-10-22 03:07:48] Arguments: --nthreads 4
[2025-10-22 03:07:48] Threads: 4
[2025-10-22 03:07:48] Checking for CVMFS
[2025-10-22 03:07:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 03:07:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 03:07:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 03:07:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 03:07:48] 2.9.2.0 1544808 1471 86408 151976 3 57 24370558 36864001 0 130560 0 1289475 99.990 54794 2427 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-22 03:07:48] CVMFS is ok
[2025-10-22 03:07:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 03:07:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 03:07:48] Further information can be found at the LHC@home message board.
[2025-10-22 03:07:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 03:07:48] Checking for apptainer binary...
[2025-10-22 03:07:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 03:07:48] Running /usr/bin/apptainer --version
[2025-10-22 03:07:48] apptainer version 1.4.1-1.1
[2025-10-22 03:07:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 03:07:48] thA319
[2025-10-22 03:07:48] apptainer works
[2025-10-22 03:07:49] Set ATHENA_PROC_NUMBER=4
[2025-10-22 03:07:49] Set ATHENA_CORE_NUMBER=4
[2025-10-22 03:07:49] Starting ATLAS job with PandaID=6852991992
[2025-10-22 03:07:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 04:27:07]  *** The last 200 lines of the pilot log: ***
[2025-10-22 04:27:07] 2025-10-22 02:26:33,655 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,655 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,655 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,655 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,655 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,655 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,656 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 04:27:07] 2025-10-22 02:26:33,656 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,656 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 04:27:07] 2025-10-22 02:26:33,656 | INFO     | job 6852991992 has completed (purged errors)
[2025-10-22 04:27:07] 2025-10-22 02:26:33,656 | INFO     | overall cleanup function is called
[2025-10-22 04:27:07] 2025-10-22 02:26:34,250 | WARNING  | process 2053695 can no longer be monitored (due to stat problems) - aborting
[2025-10-22 04:27:07] 2025-10-22 02:26:34,287 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 04:27:07] 2025-10-22 02:26:34,333 | INFO     | number of running child processes to parent process 2053695: 1
[2025-10-22 04:27:07] 2025-10-22 02:26:34,333 | INFO     | maximum number of monitored processes: 6
[2025-10-22 04:27:07] 2025-10-22 02:26:34,333 | INFO     | aborting job monitoring since job object (job id=6852991992) has expired
[2025-10-22 04:27:07] 2025-10-22 02:26:34,659 | INFO     | --- collectZombieJob: --- 10, [2053695]
[2025-10-22 04:27:07] 2025-10-22 02:26:34,659 | INFO     | zombie collector waiting for pid 2053695
[2025-10-22 04:27:07] 2025-10-22 02:26:34,660 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 04:27:07] 2025-10-22 02:26:34,660 | INFO     | collected zombie processes
[2025-10-22 04:27:07] 2025-10-22 02:26:34,660 | INFO     | will attempt to kill all subprocesses of pid=2053695
[2025-10-22 04:27:07] 2025-10-22 02:26:34,709 | INFO     | process IDs to be killed: [2053695] (in reverse order)
[2025-10-22 04:27:07] 2025-10-22 02:26:34,742 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 04:27:07] 2025-10-22 02:26:34,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 04:27:07] 2025-10-22 02:26:34,744 | INFO     | did not find any defunct processes belonging to 2053695
[2025-10-22 04:27:07] 2025-10-22 02:26:34,746 | INFO     | did not find any defunct processes belonging to 2053695
[2025-10-22 04:27:07] 2025-10-22 02:26:34,746 | INFO     | ready for new job
[2025-10-22 04:27:07] 2025-10-22 02:26:34,746 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 04:27:07] 2025-10-22 02:26:34,747 | INFO     | ***************************************
[2025-10-22 04:27:07] 2025-10-22 02:26:34,747 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 04:27:07] 2025-10-22 02:26:34,747 | INFO     | ***************************************
[2025-10-22 04:27:07] 2025-10-22 02:26:34,747 | INFO     | 
[2025-10-22 04:27:07] 2025-10-22 02:26:34,747 | INFO     | architecture information:
[2025-10-22 04:27:07] 2025-10-22 02:26:34,748 | INFO     | executing command: cat /etc/os-release
[2025-10-22 04:27:07] 2025-10-22 02:26:34,761 | INFO     | cat /etc/os-release:
[2025-10-22 04:27:07] NAME="CentOS Linux"
[2025-10-22 04:27:07] VERSION="7 (Core)"
[2025-10-22 04:27:07] ID="centos"
[2025-10-22 04:27:07] ID_LIKE="rhel fedora"
[2025-10-22 04:27:07] VERSION_ID="7"
[2025-10-22 04:27:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 04:27:07] ANSI_COLOR="0;31"
[2025-10-22 04:27:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 04:27:07] HOME_URL="https://www.centos.org/"
[2025-10-22 04:27:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 04:27:07] 
[2025-10-22 04:27:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 04:27:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 04:27:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 04:27:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 04:27:07] 
[2025-10-22 04:27:07] 2025-10-22 02:26:34,761 | INFO     | ***************************************
[2025-10-22 04:27:07] 2025-10-22 02:26:35,264 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-22 04:27:07] 2025-10-22 02:26:35,282 | INFO     | sufficient remaining disk space (331675074560 B)
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | INFO     | update_server=False
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | INFO     | will abort loop
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 04:27:07] 2025-10-22 02:26:35,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 04:27:07] 2025-10-22 02:26:36,288 | INFO     | [job] retrieve thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:36,289 | INFO     | [job] job monitor thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:36,289 | INFO     | [job] queue monitor thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:36,335 | INFO     | all data control threads have been joined
[2025-10-22 04:27:07] 2025-10-22 02:26:36,354 | INFO     | all payload control threads have been joined
[2025-10-22 04:27:07] 2025-10-22 02:26:36,475 | INFO     | [data] copytool_in thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:36,773 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:36,913 | INFO     | [payload] failed_post thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:36,918 | INFO     | all job control threads have been joined
[2025-10-22 04:27:07] 2025-10-22 02:26:37,289 | INFO     | [data] copytool_out thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:37,341 | INFO     | [data] control thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:37,360 | INFO     | [payload] control thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:37,456 | INFO     | [payload] validate_post thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:37,576 | INFO     | [job] validate thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:37,700 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:37,779 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:37,924 | INFO     | [job] control thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:39,290 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:26:45,517 | INFO     | job.realtimelogging is not enabled
[2025-10-22 04:27:07] 2025-10-22 02:26:46,523 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 04:27:07] 2025-10-22 02:27:01,224 | INFO     | [monitor] cgroup control has ended
[2025-10-22 04:27:07] 2025-10-22 02:27:02,197 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302750046016)>', '<ExcThread(monitor, started 140301708535552)>']
[2025-10-22 04:27:07] 2025-10-22 02:27:04,853 | INFO     | PID=2047104 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 04:27:07] 2025-10-22 02:27:04,853 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 04:27:07] 2025-10-22 02:27:04,853 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 04:27:07] 2025-10-22 02:27:04,853 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 04:27:07] 2025-10-22 02:27:04,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 04:27:07] 2025-10-22 02:27:04,853 | INFO     | [monitor] control thread has ended
[2025-10-22 04:27:07] 2025-10-22 02:27:07,223 | INFO     | all workflow threads have been joined
[2025-10-22 04:27:07] 2025-10-22 02:27:07,223 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 04:27:07] 2025-10-22 02:27:07,223 | INFO     | traces error code: 0
[2025-10-22 04:27:07] 2025-10-22 02:27:07,223 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 04:27:07] 2025-10-22 02:27:07,294 [wrapper] ==== pilot stdout END ====
[2025-10-22 04:27:07] 2025-10-22 02:27:07,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 04:27:07] 2025-10-22 02:27:07,302 [wrapper] pilotpid: 2047104
[2025-10-22 04:27:07] 2025-10-22 02:27:07,305 [wrapper] Pilot exit status: 0
[2025-10-22 04:27:07] 2025-10-22 02:27:07,316 [wrapper] pandaids: 6852991992
[2025-10-22 04:27:07] 2025-10-22 02:27:07,338 [wrapper] cleanup supervisor_pilot 2066021 2047105
[2025-10-22 04:27:07] 2025-10-22 02:27:07,342 [wrapper] Test setup, not cleaning
[2025-10-22 04:27:07] 2025-10-22 02:27:07,345 [wrapper] apfmon messages muted
[2025-10-22 04:27:07] 2025-10-22 02:27:07,349 [wrapper] ==== wrapper stdout END ====
[2025-10-22 04:27:07] 2025-10-22 02:27:07,353 [wrapper] ==== wrapper stderr END ====
[2025-10-22 04:27:07]  *** Error codes and diagnostics ***
[2025-10-22 04:27:07]     "exeErrorCode": 0,
[2025-10-22 04:27:07]     "exeErrorDiag": "",
[2025-10-22 04:27:07]     "pilotErrorCode": 0,
[2025-10-22 04:27:07]     "pilotErrorDiag": "",
[2025-10-22 04:27:07]  *** Listing of results directory ***
[2025-10-22 04:27:07] total 434764
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc    557409 Oct 21 10:09 pilot3.tar.gz
[2025-10-22 04:27:07] -rwx------ 1 boinc boinc     36292 Oct 21 10:12 runpilot2-wrapper.sh
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc      5112 Oct 21 10:12 queuedata.json
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc       100 Oct 22 03:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 04:27:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 03:07 run_atlas
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc       105 Oct 22 03:07 job.xml
[2025-10-22 04:27:07] -rw-r--r-- 2 boinc boinc 227446380 Oct 22 03:07 EVNT.46771634._002524.pool.root.1
[2025-10-22 04:27:07] -rw-r--r-- 2 boinc boinc    569673 Oct 22 03:07 input.tar.gz
[2025-10-22 04:27:07] -rw-r--r-- 2 boinc boinc     15120 Oct 22 03:07 start_atlas.sh
[2025-10-22 04:27:07] drwxrwx--x 2 boinc boinc      4096 Oct 22 03:07 shared
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc         0 Oct 22 03:07 boinc_setup_complete
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc      6370 Oct 22 03:07 init_data.xml
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc         0 Oct 22 03:07 boinc_lockfile
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc      2560 Oct 22 03:07 pandaJob.out
[2025-10-22 04:27:07] -rw------- 1 boinc boinc    978456 Oct 22 03:07 agis_schedconf.cvmfs.json
[2025-10-22 04:27:07] -rw------- 1 boinc boinc   1560740 Oct 22 03:07 agis_ddmendpoints.agis.ALL.json
[2025-10-22 04:27:07] drwx------ 5 boinc boinc      4096 Oct 22 03:07 pilot3
[2025-10-22 04:27:07] -rw------- 1 boinc boinc 211923724 Oct 22 04:26 HITS.46771637._063901.pool.root.1
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc       529 Oct 22 04:26 boinc_task_state.xml
[2025-10-22 04:27:07] -rw------- 1 boinc boinc        95 Oct 22 04:26 pilot_heartbeat.json
[2025-10-22 04:27:07] -rw------- 1 boinc boinc      1023 Oct 22 04:26 memory_monitor_summary.json
[2025-10-22 04:27:07] -rw------- 1 boinc boinc    270615 Oct 22 04:26 log.46771637._063901.job.log.tgz.1
[2025-10-22 04:27:07] -rw------- 1 boinc boinc      7761 Oct 22 04:26 heartbeat.json
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc        27 Oct 22 04:26 wrapper_checkpoint.txt
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc      8192 Oct 22 04:26 boinc_mmap_file
[2025-10-22 04:27:07] -rw------- 1 boinc boinc      4826 Oct 22 04:27 pilotlog.txt
[2025-10-22 04:27:07] -rw------- 1 boinc boinc    694969 Oct 22 04:27 log.46771637._063901.job.log.1
[2025-10-22 04:27:07] -rw------- 1 boinc boinc       357 Oct 22 04:27 output.list
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc       620 Oct 22 04:27 runtime_log
[2025-10-22 04:27:07] -rw------- 1 boinc boinc    983040 Oct 22 04:27 result.tar.gz
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc      8777 Oct 22 04:27 runtime_log.err
[2025-10-22 04:27:07] -rw------- 1 boinc boinc       658 Oct 22 04:27 QSnMDm7eMV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmIAfMDmn1Uomm.diag
[2025-10-22 04:27:07] -rw-r--r-- 1 boinc boinc     12661 Oct 22 04:27 stderr.txt
[2025-10-22 04:27:07] HITS file was successfully produced:
[2025-10-22 04:27:07] -rw------- 1 boinc boinc 211923724 Oct 22 04:26 shared/HITS.pool.root.1
[2025-10-22 04:27:07]  *** Contents of shared directory: ***
[2025-10-22 04:27:07] total 430620
[2025-10-22 04:27:07] -rw-r--r-- 2 boinc boinc 227446380 Oct 22 03:07 ATLAS.root_0
[2025-10-22 04:27:07] -rw-r--r-- 2 boinc boinc    569673 Oct 22 03:07 input.tar.gz
[2025-10-22 04:27:07] -rw-r--r-- 2 boinc boinc     15120 Oct 22 03:07 start_atlas.sh
[2025-10-22 04:27:07] -rw------- 1 boinc boinc 211923724 Oct 22 04:26 HITS.pool.root.1
[2025-10-22 04:27:07] -rw------- 1 boinc boinc    983040 Oct 22 04:27 result.tar.gz
04:27:08 (2043311): run_atlas exited; CPU time 17683.534228
04:27:08 (2043311): called boinc_finish(0)

</stderr_txt>
]]>

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