Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:33:25 (3998161): wrapper (7.7.26015): starting
00:33:25 (3998161): wrapper: running run_atlas (--nthreads 12)
[2025-10-22 00:33:25] Arguments: --nthreads 12
[2025-10-22 00:33:25] Threads: 12
[2025-10-22 00:33:25] Checking for CVMFS
[2025-10-22 00:33:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 00:33:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 00:33:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 00:33:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 00:33:27] 2.13.2.0 2167092 8610 184788 151974 0 159 24489056 46080001 46970 130560 0 57490497 99.958 9807066 21709 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-22 00:33:27] CVMFS is ok
[2025-10-22 00:33:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 00:33:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 00:33:27] Further information can be found at the LHC@home message board.
[2025-10-22 00:33:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 00:33:27] Checking for apptainer binary...
[2025-10-22 00:33:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 00:33:27] Running /usr/bin/apptainer --version
[2025-10-22 00:33:27] apptainer version 1.4.2-1.el9
[2025-10-22 00:33:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 00:33:28] mff2103.farm.particle.cz
[2025-10-22 00:33:28] apptainer works
[2025-10-22 00:33:28] Set ATHENA_PROC_NUMBER=12
[2025-10-22 00:33:28] Set ATHENA_CORE_NUMBER=12
[2025-10-22 00:33:28] Starting ATLAS job with PandaID=6853515174
[2025-10-22 00:33:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 02:38:13]  *** The last 200 lines of the pilot log: ***
[2025-10-22 02:38:13] 2025-10-22 00:03:34,580 | INFO     | monitor loop #366: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:34,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:34,621 | INFO     | time since job start (5320s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:36,628 | INFO     | time since job start (5322s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:37,086 | INFO     | monitor loop #367: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:37,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:38,636 | INFO     | time since job start (5324s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:39,594 | INFO     | monitor loop #368: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:39,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:41,398 | INFO     | PID=4016478 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 02:38:13] 2025-10-22 00:03:41,398 | INFO     | .. there are 87 such processes running
[2025-10-22 02:38:13] 2025-10-22 00:03:42,109 | INFO     | monitor loop #369: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:42,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:42,405 | INFO     | time since job start (5328s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:44,413 | INFO     | time since job start (5330s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:44,619 | INFO     | monitor loop #370: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:44,619 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:46,423 | INFO     | time since job start (5332s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:47,126 | INFO     | monitor loop #371: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:47,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:48,432 | INFO     | time since job start (5334s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:49,634 | INFO     | monitor loop #372: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:49,634 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:50,445 | INFO     | time since job start (5336s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:52,139 | INFO     | monitor loop #373: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:52,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:52,453 | INFO     | time since job start (5338s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:54,473 | INFO     | time since job start (5340s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:54,651 | INFO     | monitor loop #374: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:54,651 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:56,480 | INFO     | time since job start (5342s) is within the limit (172800.0s)
[2025-10-22 02:38:13] 2025-10-22 00:03:57,156 | INFO     | monitor loop #375: job 0:6853515174 is in state 'finished'
[2025-10-22 02:38:13] 2025-10-22 00:03:57,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 02:38:13] 2025-10-22 00:03:57,568 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-22 02:38:13] 2025-10-22 00:03:57,587 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2782.753645833334
[2025-10-22 02:38:13] 2025-10-22 00:03:57,605 | INFO     | using path: /scratch/.boinc/slots/3/PanDA_Pilot-6853515174/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 02:38:13] 2025-10-22 00:03:57,605 | INFO     | extracted standard info from prmon json
[2025-10-22 02:38:13] 2025-10-22 00:03:57,605 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 02:38:13] 2025-10-22 00:03:57,606 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 02:38:13] 2025-10-22 00:03:57,606 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 02:38:13] 2025-10-22 00:03:57,606 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 02:38:13] 2025-10-22 00:03:57,608 | INFO     | fitting pss+swap vs Time
[2025-10-22 02:38:13] 2025-10-22 00:03:57,611 | INFO     | sum of square deviations: 147126479.5
[2025-10-22 02:38:13] 2025-10-22 00:03:57,611 | INFO     | sum of deviations: -1726947362.5
[2025-10-22 02:38:13] 2025-10-22 00:03:57,611 | INFO     | mean x: 1761088902.5
[2025-10-22 02:38:13] 2025-10-22 00:03:57,611 | INFO     | mean y: 2675948.653846154
[2025-10-22 02:38:13] 2025-10-22 00:03:57,612 | INFO     | -- intersect: 20674059139.74281
[2025-10-22 02:38:13] 2025-10-22 00:03:57,612 | INFO     | intersect: 20674059139.74281
[2025-10-22 02:38:13] 2025-10-22 00:03:57,612 | INFO     | chi2: 0.003638845609258965
[2025-10-22 02:38:13] 2025-10-22 00:03:57,612 | INFO     | -- intersect: 20674059139.74281
[2025-10-22 02:38:13] 2025-10-22 00:03:57,612 | INFO     | current memory leak: -11.74 B/s (using 78 data points, chi2=0.00)
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | could have reported an average CPU frequency of 2819 MHz (6 samples)
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | ..............................
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | . Timing measurements:
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | . get job = 0 s
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | . initial setup = 3 s
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | . payload setup = 44 s
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | . stage-in = 0 s
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | . payload execution = 5158 s
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | . stage-out = 2 s
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | . log creation = 0 s
[2025-10-22 02:38:13] 2025-10-22 00:03:57,613 | INFO     | ..............................
[2025-10-22 02:38:13] 2025-10-22 00:03:57,707 | INFO     | 
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | job summary report
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | --------------------------------------------------
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | PanDA job id: 6853515174
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | task id: 46809188
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | errors: (none)
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | pilot state: finished 
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | transexitcode: 0
[2025-10-22 02:38:13] 2025-10-22 00:03:57,709 | INFO     | exeerrorcode: 0
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | exeerrordiag: 
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | exitcode: 0
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | exitmsg: OK
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | cpuconsumptiontime: 30564 s
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | nevents: 400
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | neventsw: 0
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | pid: 4061568
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | pgrp: 4061568
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | corecount: 12
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | event service: False
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | sizes: {0: 2348010, 1: 2348696, 2: 2348895, 12: 2348895, 23: 2348923, 34: 2348951, 41: 2349369, 45: 2349397, 5206: 2375844, 5207: 2375843, 5211: 2384899, 5213: 238
[2025-10-22 02:38:13] 2025-10-22 00:03:57,710 | INFO     | --------------------------------------------------
[2025-10-22 02:38:13] 2025-10-22 00:03:57,711 | INFO     | 
[2025-10-22 02:38:13] 2025-10-22 00:03:57,711 | INFO     | executing command: ls -lF /scratch/.boinc/slots/3
[2025-10-22 02:38:13] 2025-10-22 00:03:57,860 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,860 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,860 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,860 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,861 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,862 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 02:38:13] 2025-10-22 00:03:57,862 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,862 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 02:38:13] 2025-10-22 00:03:57,862 | INFO     | job 6853515174 has completed (purged errors)
[2025-10-22 02:38:13] 2025-10-22 00:03:57,862 | INFO     | overall cleanup function is called
[2025-10-22 02:38:13] 2025-10-22 00:03:58,887 | INFO     | --- collectZombieJob: --- 10, [4061568]
[2025-10-22 02:38:13] 2025-10-22 00:03:58,888 | INFO     | zombie collector waiting for pid 4061568
[2025-10-22 02:38:13] 2025-10-22 00:03:58,888 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 02:38:13] 2025-10-22 00:03:58,888 | INFO     | collected zombie processes
[2025-10-22 02:38:13] 2025-10-22 00:03:58,888 | INFO     | will attempt to kill all subprocesses of pid=4061568
[2025-10-22 02:38:13] 2025-10-22 00:04:00,450 | INFO     | process IDs to be killed: [4061568] (in reverse order)
[2025-10-22 02:38:13] 2025-10-22 00:04:00,959 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 02:38:13] 2025-10-22 00:04:00,959 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 02:38:13] 2025-10-22 00:04:01,019 | INFO     | did not find any defunct processes belonging to 4061568
[2025-10-22 02:38:13] 2025-10-22 00:04:01,067 | INFO     | did not find any defunct processes belonging to 4061568
[2025-10-22 02:38:13] 2025-10-22 00:04:01,067 | INFO     | ready for new job
[2025-10-22 02:38:13] 2025-10-22 00:04:01,067 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 02:38:13] 2025-10-22 00:04:01,069 | INFO     | ***************************************
[2025-10-22 02:38:13] 2025-10-22 00:04:01,069 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 02:38:13] 2025-10-22 00:04:01,069 | INFO     | ***************************************
[2025-10-22 02:38:13] 2025-10-22 00:04:01,069 | INFO     | 
[2025-10-22 02:38:13] 2025-10-22 00:04:01,075 | INFO     | architecture information:
[2025-10-22 02:38:13] 2025-10-22 00:04:01,088 | INFO     | executing command: cat /etc/os-release
[2025-10-22 02:38:13] 2025-10-22 00:04:01,202 | INFO     | cat /etc/os-release:
[2025-10-22 02:38:13] NAME="CentOS Linux"
[2025-10-22 02:38:13] VERSION="7 (Core)"
[2025-10-22 02:38:13] ID="centos"
[2025-10-22 02:38:13] ID_LIKE="rhel fedora"
[2025-10-22 02:38:13] VERSION_ID="7"
[2025-10-22 02:38:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 02:38:13] ANSI_COLOR="0;31"
[2025-10-22 02:38:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 02:38:13] HOME_URL="https://www.centos.org/"
[2025-10-22 02:38:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 02:38:13] 
[2025-10-22 02:38:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 02:38:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 02:38:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 02:38:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 02:38:13] 
[2025-10-22 02:38:13] 2025-10-22 00:04:01,202 | INFO     | ***************************************
[2025-10-22 02:38:13] 2025-10-22 00:04:01,706 | INFO     | executing command: df -mP /scratch/.boinc/slots/3
[2025-10-22 02:38:13] 2025-10-22 00:04:01,805 | INFO     | sufficient remaining disk space (1668670291968 B)
[2025-10-22 02:38:13] 2025-10-22 00:04:01,805 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 02:38:13] 2025-10-22 00:04:01,805 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 02:38:13] 2025-10-22 00:04:01,805 | INFO     | update_server=False
[2025-10-22 02:38:13] 2025-10-22 00:04:01,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 02:38:13] 2025-10-22 00:04:01,920 | INFO     | all payload control threads have been joined
[2025-10-22 02:38:13] 2025-10-22 00:04:02,183 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-22 02:38:13] 2025-10-22 00:04:02,184 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-22 02:38:13] 2025-10-22 00:04:02,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 02:38:13] 2025-10-22 00:04:02,184 | INFO     | will abort loop
[2025-10-22 02:38:13] 2025-10-22 00:04:02,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 02:38:13] 2025-10-22 00:04:02,609 | INFO     | [monitor] cgroup control has ended
[2025-10-22 02:38:13] 2025-10-22 00:04:02,663 | INFO     | all data control threads have been joined
[2025-10-22 02:38:13] 2025-10-22 00:04:02,726 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 02:38:13] 2025-10-22 00:04:02,812 | INFO     | [job] retrieve thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:02,925 | INFO     | [payload] control thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:03,069 | INFO     | [payload] failed_post thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:03,190 | INFO     | [job] job monitor thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:03,198 | INFO     | all job control threads have been joined
[2025-10-22 02:38:13] 2025-10-22 00:04:03,574 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:03,677 | INFO     | [data] control thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:03,733 | INFO     | [job] queue monitor thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:03,757 | INFO     | [payload] validate_post thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:04,000 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:04,011 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:04,076 | INFO     | [data] copytool_in thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:04,205 | INFO     | [job] control thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:04,268 | INFO     | [job] validate thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:04,607 | INFO     | [data] copytool_out thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:05,072 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 02:38:13] 2025-10-22 00:04:09,084 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:11,965 | INFO     | job.realtimelogging is not enabled
[2025-10-22 02:38:13] 2025-10-22 00:04:12,973 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 02:38:13] 2025-10-22 00:04:12,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139631207728960)>', '<ExcThread(monitor, started 139630720575232)>']
[2025-10-22 02:38:13] 2025-10-22 00:04:18,020 | INFO     | all workflow threads have been joined
[2025-10-22 02:38:13] 2025-10-22 00:04:18,022 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 02:38:13] 2025-10-22 00:04:18,023 | INFO     | traces error code: 0
[2025-10-22 02:38:13] 2025-10-22 00:04:18,023 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 02:38:13] 2025-10-22 00:04:31,280 | INFO     | PID=4016478 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 02:38:13] 2025-10-22 00:04:31,281 | INFO     | .. there are 87 such processes running
[2025-10-22 02:38:13] 2025-10-22 00:04:31,281 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 02:38:13] 2025-10-22 00:04:31,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 02:38:13] 2025-10-22 00:04:31,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 02:38:13] 2025-10-22 00:04:31,281 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 02:38:13] 2025-10-22 00:04:31,281 | INFO     | [monitor] control thread has ended
[2025-10-22 02:38:13] 2025-10-22 00:04:31,845 [wrapper] ==== pilot stdout END ====
[2025-10-22 02:38:13] 2025-10-22 00:04:31,883 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 02:38:13] 2025-10-22 00:04:31,927 [wrapper] pilotpid: 4016478
[2025-10-22 02:38:13] 2025-10-22 00:04:31,984 [wrapper] Pilot exit status: 0
[2025-10-22 02:38:13] 2025-10-22 00:04:32,117 [wrapper] pandaids: 6853515174
[2025-10-22 02:38:13] 2025-10-22 00:04:32,565 [wrapper] cleanup supervisor_pilot  163308 4016479
[2025-10-22 02:38:13] 2025-10-22 00:04:32,583 [wrapper] Test setup, not cleaning
[2025-10-22 02:38:13] 2025-10-22 00:04:32,617 [wrapper] apfmon messages muted
[2025-10-22 02:38:13] 2025-10-22 00:04:32,643 [wrapper] ==== wrapper stdout END ====
[2025-10-22 02:38:13] 2025-10-22 00:04:32,664 [wrapper] ==== wrapper stderr END ====
[2025-10-22 02:38:13]  *** Error codes and diagnostics ***
[2025-10-22 02:38:13]     "exeErrorCode": 0,
[2025-10-22 02:38:13]     "exeErrorDiag": "",
[2025-10-22 02:38:13]     "pilotErrorCode": 0,
[2025-10-22 02:38:13]     "pilotErrorDiag": "",
[2025-10-22 02:38:13]  *** Listing of results directory ***
[2025-10-22 02:38:13] total 335352
[2025-10-22 02:38:13] -rwx------ 1 boinc boinc     36292 Oct 21 09:19 runpilot2-wrapper.sh
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc    557409 Oct 21 09:19 pilot3.tar.gz
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc      5112 Oct 21 09:19 queuedata.json
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc       100 Oct 22 00:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 02:38:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 00:33 run_atlas
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc       105 Oct 22 00:33 job.xml
[2025-10-22 02:38:13] -rw-r--r-- 2 boinc boinc 188924132 Oct 22 00:33 EVNT.46809186._000206.pool.root.1
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc      6665 Oct 22 00:33 init_data.xml
[2025-10-22 02:38:13] -rw-r--r-- 2 boinc boinc     15120 Oct 22 00:33 start_atlas.sh
[2025-10-22 02:38:13] drwxrwx--x 2 boinc boinc      4096 Oct 22 00:33 shared
[2025-10-22 02:38:13] -rw-r--r-- 2 boinc boinc    569667 Oct 22 00:33 input.tar.gz
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc         0 Oct 22 00:33 boinc_lockfile
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc      2492 Oct 22 00:33 pandaJob.out
[2025-10-22 02:38:13] -rw------- 1 boinc boinc    978456 Oct 22 00:34 agis_schedconf.cvmfs.json
[2025-10-22 02:38:13] -rw------- 1 boinc boinc   1560740 Oct 22 00:34 agis_ddmendpoints.agis.ALL.json
[2025-10-22 02:38:13] drwx------ 5 boinc boinc      4096 Oct 22 00:34 pilot3
[2025-10-22 02:38:13] -rw------- 1 boinc boinc 148358699 Oct 22 02:01 HITS.46809188._005336.pool.root.1
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc       529 Oct 22 02:02 boinc_task_state.xml
[2025-10-22 02:38:13] -rw------- 1 boinc boinc      1019 Oct 22 02:03 memory_monitor_summary.json
[2025-10-22 02:38:13] -rw------- 1 boinc boinc    382335 Oct 22 02:03 log.46809188._005336.job.log.tgz.1
[2025-10-22 02:38:13] -rw------- 1 boinc boinc        95 Oct 22 02:03 pilot_heartbeat.json
[2025-10-22 02:38:13] -rw------- 1 boinc boinc      7785 Oct 22 02:03 heartbeat.json
[2025-10-22 02:38:13] -rw------- 1 boinc boinc       823 Oct 22 02:04 pilotlog.txt
[2025-10-22 02:38:13] -rw------- 1 boinc boinc    724088 Oct 22 02:04 log.46809188._005336.job.log.1
[2025-10-22 02:38:13] -rw------- 1 boinc boinc       357 Oct 22 02:04 output.list
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc       620 Oct 22 02:04 runtime_log
[2025-10-22 02:38:13] -rw------- 1 boinc boinc   1126400 Oct 22 02:04 result.tar.gz
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc      8764 Oct 22 02:04 runtime_log.err
[2025-10-22 02:38:13] -rw------- 1 boinc boinc       663 Oct 22 02:04 lovKDm2pLV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfq1NDmNKDaOm.diag
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc        26 Oct 22 02:38 wrapper_checkpoint.txt
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc     22332 Oct 22 02:38 stderr.txt
[2025-10-22 02:38:13] -rw-r--r-- 1 boinc boinc      8192 Oct 22 02:38 boinc_mmap_file
[2025-10-22 02:38:13] HITS file was successfully produced:
[2025-10-22 02:38:13] -rw------- 1 boinc boinc 148358699 Oct 22 02:01 shared/HITS.pool.root.1
[2025-10-22 02:38:13]  *** Contents of shared directory: ***
[2025-10-22 02:38:13] total 331068
[2025-10-22 02:38:13] -rw-r--r-- 2 boinc boinc 188924132 Oct 22 00:33 ATLAS.root_0
[2025-10-22 02:38:13] -rw-r--r-- 2 boinc boinc     15120 Oct 22 00:33 start_atlas.sh
[2025-10-22 02:38:13] -rw-r--r-- 2 boinc boinc    569667 Oct 22 00:33 input.tar.gz
[2025-10-22 02:38:13] -rw------- 1 boinc boinc 148358699 Oct 22 02:01 HITS.pool.root.1
[2025-10-22 02:38:13] -rw------- 1 boinc boinc   1126400 Oct 22 02:04 result.tar.gz
02:38:15 (3998161): run_atlas exited; CPU time 30863.845286
02:38:15 (3998161): called boinc_finish(0)

</stderr_txt>
]]>

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