Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:17:42 (385113): wrapper (7.7.26015): starting
02:17:42 (385113): wrapper: running run_atlas (--nthreads 3)
[2025-10-22 02:17:42] Arguments: --nthreads 3
[2025-10-22 02:17:42] Threads: 3
[2025-10-22 02:17:42] Checking for CVMFS
[2025-10-22 02:17:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 02:17:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 02:17:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 02:17:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 02:17:43] 2.9.2.0 4130834 1493 77608 151976 2 56 32046424 36864000 0 130560 0 1186902 99.988 56479 2239 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-22 02:17:43] CVMFS is ok
[2025-10-22 02:17:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 02:17:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 02:17:43] Further information can be found at the LHC@home message board.
[2025-10-22 02:17:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 02:17:43] Checking for apptainer binary...
[2025-10-22 02:17:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 02:17:43] Running /usr/bin/apptainer --version
[2025-10-22 02:17:43] apptainer version 1.4.1-1.1
[2025-10-22 02:17:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 02:17:43] magicA161a
[2025-10-22 02:17:43] apptainer works
[2025-10-22 02:17:43] Set ATHENA_PROC_NUMBER=3
[2025-10-22 02:17:43] Set ATHENA_CORE_NUMBER=3
[2025-10-22 02:17:43] Starting ATLAS job with PandaID=6853691396
[2025-10-22 02:17:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 03:19:59]  *** The last 200 lines of the pilot log: ***
[2025-10-22 03:19:59] 2025-10-22 01:18:55,432 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 03:19:59] 2025-10-22 01:18:55,432 | INFO     | update_server=False
[2025-10-22 03:19:59] 2025-10-22 01:18:55,432 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 03:19:59] 2025-10-22 01:18:55,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 03:19:59] 2025-10-22 01:18:55,629 | INFO     | all data control threads have been joined
[2025-10-22 03:19:59] 2025-10-22 01:18:55,820 | INFO     | all job control threads have been joined
[2025-10-22 03:19:59] 2025-10-22 01:18:55,856 | INFO     | all payload control threads have been joined
[2025-10-22 03:19:59] 2025-10-22 01:18:56,037 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 03:19:59] 2025-10-22 01:18:56,037 | INFO     | aborting loop
[2025-10-22 03:19:59] 2025-10-22 01:18:56,436 | INFO     | [job] retrieve thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:56,438 | INFO     | [job] queue monitor thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:56,634 | INFO     | [data] control thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:56,825 | INFO     | [job] control thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:56,851 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 03:19:59] 2025-10-22 01:18:56,862 | INFO     | [payload] control thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:56,967 | INFO     | [data] copytool_in thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:56,997 | INFO     | [payload] failed_post thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:57,043 | INFO     | [job] job monitor thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:57,144 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:57,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 03:19:59] 2025-10-22 01:18:57,517 | INFO     | [job] validate thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:57,518 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:57,571 | INFO     | [payload] validate_post thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:57,653 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:57,833 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:18:58,858 | INFO     | [data] copytool_out thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:19:01,491 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 03:19:59] 2025-10-22 01:19:25,921 | INFO     | PID=388830 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-22 03:19:59] 2025-10-22 01:19:25,922 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 03:19:59] 2025-10-22 01:19:25,922 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 03:19:59] 2025-10-22 01:19:25,922 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 03:19:59] 2025-10-22 01:19:53,036 | INFO     | [monitor] cgroup control has ended
[2025-10-22 03:19:59] 2025-10-22 01:19:54,543 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140651304929088)>', '<ExcThread(monitor, started 140650490087168)>']
[2025-10-22 03:19:59] 2025-10-22 01:19:55,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 03:19:59] 2025-10-22 01:19:55,073 | INFO     | [monitor] control thread has ended
[2025-10-22 03:19:59] 2025-10-22 01:19:59,568 | INFO     | all workflow threads have been joined
[2025-10-22 03:19:59] 2025-10-22 01:19:59,569 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 03:19:59] 2025-10-22 01:19:59,569 | INFO     | traces error code: 0
[2025-10-22 03:19:59] 2025-10-22 01:19:59,569 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 03:19:59] 2025-10-22 01:19:59,619 [wrapper] ==== pilot stdout END ====
[2025-10-22 03:19:59] 2025-10-22 01:19:59,621 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 03:19:59] 2025-10-22 01:19:59,623 [wrapper] pilotpid: 388830
[2025-10-22 03:19:59] 2025-10-22 01:19:59,626 [wrapper] Pilot exit status: 0
[2025-10-22 03:19:59] 2025-10-22 01:19:59,633 [wrapper] pandaids: 6853691396
[2025-10-22 03:19:59] 2025-10-22 01:19:59,649 [wrapper] cleanup supervisor_pilot  404569 388831
[2025-10-22 03:19:59] 2025-10-22 01:19:59,651 [wrapper] Test setup, not cleaning
[2025-10-22 03:19:59] 2025-10-22 01:19:59,654 [wrapper] apfmon messages muted
[2025-10-22 03:19:59] 2025-10-22 01:19:59,656 [wrapper] ==== wrapper stdout END ====
[2025-10-22 03:19:59] 2025-10-22 01:19:59,658 [wrapper] ==== wrapper stderr END ====
[2025-10-22 03:19:59]  *** Error codes and diagnostics ***
[2025-10-22 03:19:59]     "exeErrorCode": 0,
[2025-10-22 03:19:59]     "exeErrorDiag": "",
[2025-10-22 03:19:59]     "pilotErrorCode": 0,
[2025-10-22 03:19:59]     "pilotErrorDiag": "",
[2025-10-22 03:19:59]  *** Listing of results directory ***
[2025-10-22 03:19:59] total 332828
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc    557409 Oct 21 11:00 pilot3.tar.gz
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc      5112 Oct 21 11:43 queuedata.json
[2025-10-22 03:19:59] -rwx------ 1 boinc boinc     36292 Oct 21 11:44 runpilot2-wrapper.sh
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc       100 Oct 22 02:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 03:19:59] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 02:17 run_atlas
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc       105 Oct 22 02:17 job.xml
[2025-10-22 03:19:59] -rw-r--r-- 2 boinc boinc 190626124 Oct 22 02:17 EVNT.46809186._000213.pool.root.1
[2025-10-22 03:19:59] drwxrwx--x 2 boinc boinc      4096 Oct 22 02:17 shared
[2025-10-22 03:19:59] -rw-r--r-- 2 boinc boinc    569665 Oct 22 02:17 input.tar.gz
[2025-10-22 03:19:59] -rw-r--r-- 2 boinc boinc     15120 Oct 22 02:17 start_atlas.sh
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc         0 Oct 22 02:17 boinc_setup_complete
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc      6448 Oct 22 02:17 init_data.xml
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc         0 Oct 22 02:17 boinc_lockfile
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc      2491 Oct 22 02:17 pandaJob.out
[2025-10-22 03:19:59] -rw------- 1 boinc boinc    978456 Oct 22 02:17 agis_schedconf.cvmfs.json
[2025-10-22 03:19:59] -rw------- 1 boinc boinc   1560740 Oct 22 02:17 agis_ddmendpoints.agis.ALL.json
[2025-10-22 03:19:59] drwx------ 5 boinc boinc      4096 Oct 22 02:17 pilot3
[2025-10-22 03:19:59] -rw------- 1 boinc boinc 144744718 Oct 22 03:18 HITS.46809188._005526.pool.root.1
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc       529 Oct 22 03:18 boinc_task_state.xml
[2025-10-22 03:19:59] -rw------- 1 boinc boinc      1013 Oct 22 03:18 memory_monitor_summary.json
[2025-10-22 03:19:59] -rw------- 1 boinc boinc    222927 Oct 22 03:18 log.46809188._005526.job.log.tgz.1
[2025-10-22 03:19:59] -rw------- 1 boinc boinc      7763 Oct 22 03:18 heartbeat.json
[2025-10-22 03:19:59] -rw------- 1 boinc boinc        95 Oct 22 03:19 pilot_heartbeat.json
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc      8192 Oct 22 03:19 boinc_mmap_file
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc        27 Oct 22 03:19 wrapper_checkpoint.txt
[2025-10-22 03:19:59] -rw------- 1 boinc boinc      4751 Oct 22 03:19 pilotlog.txt
[2025-10-22 03:19:59] -rw------- 1 boinc boinc    552213 Oct 22 03:19 log.46809188._005526.job.log.1
[2025-10-22 03:19:59] -rw------- 1 boinc boinc       357 Oct 22 03:19 output.list
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc       620 Oct 22 03:19 runtime_log
[2025-10-22 03:19:59] -rw------- 1 boinc boinc    798720 Oct 22 03:19 result.tar.gz
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc      8797 Oct 22 03:19 runtime_log.err
[2025-10-22 03:19:59] -rw------- 1 boinc boinc       662 Oct 22 03:19 XwqLDmr5NV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmXJfMDmmrrfAn.diag
[2025-10-22 03:19:59] -rw-r--r-- 1 boinc boinc      7517 Oct 22 03:19 stderr.txt
[2025-10-22 03:19:59] HITS file was successfully produced:
[2025-10-22 03:19:59] -rw------- 1 boinc boinc 144744718 Oct 22 03:18 shared/HITS.pool.root.1
[2025-10-22 03:19:59]  *** Contents of shared directory: ***
[2025-10-22 03:19:59] total 328880
[2025-10-22 03:19:59] -rw-r--r-- 2 boinc boinc 190626124 Oct 22 02:17 ATLAS.root_0
[2025-10-22 03:19:59] -rw-r--r-- 2 boinc boinc    569665 Oct 22 02:17 input.tar.gz
[2025-10-22 03:19:59] -rw-r--r-- 2 boinc boinc     15120 Oct 22 02:17 start_atlas.sh
[2025-10-22 03:19:59] -rw------- 1 boinc boinc 144744718 Oct 22 03:18 HITS.pool.root.1
[2025-10-22 03:19:59] -rw------- 1 boinc boinc    798720 Oct 22 03:19 result.tar.gz
03:20:01 (385113): run_atlas exited; CPU time 10356.970386
03:20:01 (385113): called boinc_finish(0)

</stderr_txt>
]]>

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