Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:45:01 (3419519): wrapper (7.7.26015): starting
07:45:01 (3419519): wrapper: running run_atlas (--nthreads 12)
[2025-10-22 07:45:01] Arguments: --nthreads 12
[2025-10-22 07:45:01] Threads: 12
[2025-10-22 07:45:01] Checking for CVMFS
[2025-10-22 07:45:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 07:45:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 07:45:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 07:45:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 07:45:01] 2.13.1.0 2324951 1938 67232 151983 2 57 2320118 4097025 0 130560 0 3103525 99.995 70114 2533 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-22 07:45:01] CVMFS is ok
[2025-10-22 07:45:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 07:45:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 07:45:01] Further information can be found at the LHC@home message board.
[2025-10-22 07:45:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 07:45:01] Checking for apptainer binary...
[2025-10-22 07:45:01] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-22 07:45:01] apptainer is not installed, using version from CVMFS
[2025-10-22 07:45:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 07:45:01] pckelar1.cern.ch
[2025-10-22 07:45:01] apptainer works
[2025-10-22 07:45:01] Set ATHENA_PROC_NUMBER=12
[2025-10-22 07:45:01] Set ATHENA_CORE_NUMBER=12
[2025-10-22 07:45:02] Starting ATLAS job with PandaID=6852989538
[2025-10-22 07:45:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 08:33:18]  *** The last 200 lines of the pilot log: ***
[2025-10-22 08:33:18]  protocol_id=None
[2025-10-22 08:33:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-22 08:33:18]  replicas=None
[2025-10-22 08:33:18]  scope=mc23_13p6TeV
[2025-10-22 08:33:18]  status=None
[2025-10-22 08:33:18]  status_code=0
[2025-10-22 08:33:18]  storage_token=
[2025-10-22 08:33:18]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6852989538/log.46771637._063058.job.log.tgz.1
[2025-10-22 08:33:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/37/log.46771637._063058.job.log.tgz.1
[2025-10-22 08:33:18]  workdir=None
[2025-10-22 08:33:18] ]
[2025-10-22 08:33:18] 2025-10-22 06:32:05,979 | INFO     | transferring file log.46771637._063058.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6852989538/log.46771637._063058.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-22 08:33:18] 2025-10-22 06:32:05,979 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6852989538/log.46771637._063058.job.log.tgz.1 /var/lib/boinc/slots/0/log.46771637._063058.job
[2025-10-22 08:33:18] 2025-10-22 06:32:05,991 | INFO     | adding to output.list: log.46771637._063058.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/37/log.46771637._063058.job.log.tg
[2025-10-22 08:33:18] 2025-10-22 06:32:05,992 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-22 08:33:18] 2025-10-22 06:32:05,992 | INFO     | summary of transferred files:
[2025-10-22 08:33:18] 2025-10-22 06:32:05,992 | INFO     |  -- lfn=log.46771637._063058.job.log.tgz.1, status_code=0, status=transferred
[2025-10-22 08:33:18] 2025-10-22 06:32:05,992 | INFO     | stage-out finished correctly
[2025-10-22 08:33:18] 2025-10-22 06:32:06,036 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-22 08:33:18] 2025-10-22 06:32:06,844 | INFO     | job 6852989538 has state=finished
[2025-10-22 08:33:18] 2025-10-22 06:32:06,845 | INFO     | preparing for final server update for job 6852989538 in state='finished'
[2025-10-22 08:33:18] 2025-10-22 06:32:06,845 | INFO     | this job has now completed (state=finished)
[2025-10-22 08:33:18] 2025-10-22 06:32:06,845 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-22 08:33:18] 2025-10-22 06:32:06,845 | INFO     | log transfer has been attempted: DONE
[2025-10-22 08:33:18] 2025-10-22 06:32:06,845 | INFO     | job 6852989538 has finished - writing final server update
[2025-10-22 08:33:18] 2025-10-22 06:32:06,846 | INFO     | total number of processed events: 400 (read)
[2025-10-22 08:33:18] 2025-10-22 06:32:06,847 | INFO     | executing command: lscpu
[2025-10-22 08:33:18] 2025-10-22 06:32:06,869 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-22 08:33:18] 2025-10-22 06:32:07,056 | INFO     | time since job start (2818s) is within the limit (172800.0s)
[2025-10-22 08:33:18] 2025-10-22 06:32:08,112 | WARNING  | process 3430788 can no longer be monitored (due to stat problems) - aborting
[2025-10-22 08:33:18] 2025-10-22 06:32:08,113 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6852989538/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 08:33:18] 2025-10-22 06:32:08,183 | INFO     | number of running child processes to parent process 3430788: 1
[2025-10-22 08:33:18] 2025-10-22 06:32:08,183 | INFO     | maximum number of monitored processes: 6
[2025-10-22 08:33:18] 2025-10-22 06:32:09,061 | INFO     | time since job start (2820s) is within the limit (172800.0s)
[2025-10-22 08:33:18] 2025-10-22 06:32:10,685 | INFO     | monitor loop #218: job 0:6852989538 is in state 'finished'
[2025-10-22 08:33:18] 2025-10-22 06:32:10,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-22 08:33:18] 2025-10-22 06:32:11,066 | INFO     | time since job start (2822s) is within the limit (172800.0s)
[2025-10-22 08:33:18] 2025-10-22 06:32:11,535 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-22 08:33:18] 2025-10-22 06:32:11,537 | INFO     | found 20 cores (10 cores per socket, 2 sockets) , CPU MHz: 2661.821000000001
[2025-10-22 08:33:18] 2025-10-22 06:32:11,539 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6852989538/memory_monitor_summary.json (trf name=prmon)
[2025-10-22 08:33:18] 2025-10-22 06:32:11,539 | INFO     | extracted standard info from prmon json
[2025-10-22 08:33:18] 2025-10-22 06:32:11,539 | INFO     | extracted standard memory fields from prmon json
[2025-10-22 08:33:18] 2025-10-22 06:32:11,539 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-22 08:33:18] 2025-10-22 06:32:11,539 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-22 08:33:18] 2025-10-22 06:32:11,540 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-22 08:33:18] 2025-10-22 06:32:11,540 | INFO     | fitting pss+swap vs Time
[2025-10-22 08:33:18] 2025-10-22 06:32:11,540 | INFO     | sum of square deviations: 18381740.0
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | sum of deviations: -4159897317.999999
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | mean x: 1761113397.0
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | mean y: 2893351.282051282
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | -- intersect: 398553351407.7102
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | intersect: 398553351407.7102
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | chi2: 0.053634868166022386
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | -- intersect: 398553351407.7102
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | current memory leak: -226.31 B/s (using 39 data points, chi2=0.05)
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | could have reported an average CPU frequency of 2592 MHz (5 samples)
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | ..............................
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | . Timing measurements:
[2025-10-22 08:33:18] 2025-10-22 06:32:11,541 | INFO     | . get job = 0 s
[2025-10-22 08:33:18] 2025-10-22 06:32:11,542 | INFO     | . initial setup = 1 s
[2025-10-22 08:33:18] 2025-10-22 06:32:11,542 | INFO     | . payload setup = 6 s
[2025-10-22 08:33:18] 2025-10-22 06:32:11,542 | INFO     | . stage-in = 0 s
[2025-10-22 08:33:18] 2025-10-22 06:32:11,542 | INFO     | . payload execution = 2792 s
[2025-10-22 08:33:18] 2025-10-22 06:32:11,542 | INFO     | . stage-out = 0 s
[2025-10-22 08:33:18] 2025-10-22 06:32:11,542 | INFO     | . log creation = 0 s
[2025-10-22 08:33:18] 2025-10-22 06:32:11,542 | INFO     | ..............................
[2025-10-22 08:33:18] 2025-10-22 06:32:11,591 | INFO     | 
[2025-10-22 08:33:18] 2025-10-22 06:32:11,591 | INFO     | job summary report
[2025-10-22 08:33:18] 2025-10-22 06:32:11,591 | INFO     | --------------------------------------------------
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | PanDA job id: 6852989538
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | task id: 46771637
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | errors: (none)
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | pilot state: finished 
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | transexitcode: 0
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | exeerrorcode: 0
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | exeerrordiag: 
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | exitcode: 0
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | exitmsg: OK
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | cpuconsumptiontime: 29935 s
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | nevents: 400
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | neventsw: 0
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | pid: 3430788
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | pgrp: 3430788
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | corecount: 12
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | event service: False
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | sizes: {0: 2348931, 4: 2349193, 11: 2349221, 2802: 2374594, 2803: 2383648, 2808: 2383818}
[2025-10-22 08:33:18] 2025-10-22 06:32:11,592 | INFO     | --------------------------------------------------
[2025-10-22 08:33:18] 2025-10-22 06:32:11,593 | INFO     | 
[2025-10-22 08:33:18] 2025-10-22 06:32:11,593 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-22 08:33:18] 2025-10-22 06:32:11,606 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,607 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,608 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,608 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 08:33:18] 2025-10-22 06:32:11,608 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,608 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 08:33:18] 2025-10-22 06:32:11,608 | INFO     | job 6852989538 has completed (purged errors)
[2025-10-22 08:33:18] 2025-10-22 06:32:11,608 | INFO     | overall cleanup function is called
[2025-10-22 08:33:18] 2025-10-22 06:32:12,613 | INFO     | --- collectZombieJob: --- 10, [3430788]
[2025-10-22 08:33:18] 2025-10-22 06:32:12,613 | INFO     | zombie collector waiting for pid 3430788
[2025-10-22 08:33:18] 2025-10-22 06:32:12,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 08:33:18] 2025-10-22 06:32:12,613 | INFO     | collected zombie processes
[2025-10-22 08:33:18] 2025-10-22 06:32:12,613 | INFO     | will attempt to kill all subprocesses of pid=3430788
[2025-10-22 08:33:18] 2025-10-22 06:32:12,696 | INFO     | process IDs to be killed: [3430788] (in reverse order)
[2025-10-22 08:33:18] 2025-10-22 06:32:12,727 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 08:33:18] 2025-10-22 06:32:12,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 08:33:18] 2025-10-22 06:32:12,728 | INFO     | did not find any defunct processes belonging to 3430788
[2025-10-22 08:33:18] 2025-10-22 06:32:12,730 | INFO     | did not find any defunct processes belonging to 3430788
[2025-10-22 08:33:18] 2025-10-22 06:32:12,730 | INFO     | ready for new job
[2025-10-22 08:33:18] 2025-10-22 06:32:12,730 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 08:33:18] 2025-10-22 06:32:12,731 | INFO     | ***************************************
[2025-10-22 08:33:18] 2025-10-22 06:32:12,731 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 08:33:18] 2025-10-22 06:32:12,732 | INFO     | ***************************************
[2025-10-22 08:33:18] 2025-10-22 06:32:12,732 | INFO     | 
[2025-10-22 08:33:18] 2025-10-22 06:32:12,732 | INFO     | architecture information:
[2025-10-22 08:33:18] 2025-10-22 06:32:12,733 | INFO     | executing command: cat /etc/os-release
[2025-10-22 08:33:18] 2025-10-22 06:32:12,742 | INFO     | cat /etc/os-release:
[2025-10-22 08:33:18] NAME="CentOS Linux"
[2025-10-22 08:33:18] VERSION="7 (Core)"
[2025-10-22 08:33:18] ID="centos"
[2025-10-22 08:33:18] ID_LIKE="rhel fedora"
[2025-10-22 08:33:18] VERSION_ID="7"
[2025-10-22 08:33:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 08:33:18] ANSI_COLOR="0;31"
[2025-10-22 08:33:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 08:33:18] HOME_URL="https://www.centos.org/"
[2025-10-22 08:33:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 08:33:18] 
[2025-10-22 08:33:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 08:33:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 08:33:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 08:33:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 08:33:18] 
[2025-10-22 08:33:18] 2025-10-22 06:32:12,742 | INFO     | ***************************************
[2025-10-22 08:33:18] 2025-10-22 06:32:13,245 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-22 08:33:18] 2025-10-22 06:32:13,256 | INFO     | sufficient remaining disk space (825687539712 B)
[2025-10-22 08:33:18] 2025-10-22 06:32:13,257 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 08:33:18] 2025-10-22 06:32:13,257 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 08:33:18] 2025-10-22 06:32:13,257 | INFO     | update_server=False
[2025-10-22 08:33:18] 2025-10-22 06:32:13,257 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 08:33:18] 2025-10-22 06:32:13,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 08:33:18] 2025-10-22 06:32:13,309 | INFO     | all payload control threads have been joined
[2025-10-22 08:33:18] 2025-10-22 06:32:13,367 | INFO     | all data control threads have been joined
[2025-10-22 08:33:18] 2025-10-22 06:32:13,514 | INFO     | all job control threads have been joined
[2025-10-22 08:33:18] 2025-10-22 06:32:14,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 08:33:18] 2025-10-22 06:32:14,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 08:33:18] 2025-10-22 06:32:14,194 | INFO     | aborting loop
[2025-10-22 08:33:18] 2025-10-22 06:32:14,263 | INFO     | [job] retrieve thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:14,263 | INFO     | [job] queue monitor thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:14,287 | INFO     | [data] copytool_in thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:14,313 | INFO     | [payload] control thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:14,372 | INFO     | [data] control thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:14,517 | INFO     | [job] control thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:14,882 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:15,075 | INFO     | [job] validate thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:15,199 | INFO     | [job] job monitor thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:15,226 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:15,296 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:15,530 | INFO     | [payload] validate_post thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:15,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:15,629 | INFO     | [payload] failed_post thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:16,054 | INFO     | [data] copytool_out thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:16,595 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 08:33:18] 2025-10-22 06:32:20,600 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 08:33:18] 2025-10-22 06:32:44,251 | INFO     | PID=3423341 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 08:33:18] 2025-10-22 06:32:44,251 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 08:33:18] 2025-10-22 06:32:44,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 08:33:18] 2025-10-22 06:32:44,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 08:33:18] 2025-10-22 06:33:12,804 | INFO     | [monitor] cgroup control has ended
[2025-10-22 08:33:18] 2025-10-22 06:33:13,173 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490502854464)>', '<ExcThread(monitor, started 140489948899072)>']
[2025-10-22 08:33:18] 2025-10-22 06:33:13,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 08:33:18] 2025-10-22 06:33:13,397 | INFO     | [monitor] control thread has ended
[2025-10-22 08:33:18] 2025-10-22 06:33:18,196 | INFO     | all workflow threads have been joined
[2025-10-22 08:33:18] 2025-10-22 06:33:18,197 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 08:33:18] 2025-10-22 06:33:18,197 | INFO     | traces error code: 0
[2025-10-22 08:33:18] 2025-10-22 06:33:18,197 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 08:33:18] 2025-10-22 06:33:18,280 [wrapper] ==== pilot stdout END ====
[2025-10-22 08:33:18] 2025-10-22 06:33:18,283 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 08:33:18] 2025-10-22 06:33:18,285 [wrapper] pilotpid: 3423341
[2025-10-22 08:33:18] 2025-10-22 06:33:18,287 [wrapper] Pilot exit status: 0
[2025-10-22 08:33:18] 2025-10-22 06:33:18,296 [wrapper] pandaids: 6852989538
[2025-10-22 08:33:18] 2025-10-22 06:33:18,322 [wrapper] cleanup supervisor_pilot 3443994 3423342
[2025-10-22 08:33:18] 2025-10-22 06:33:18,324 [wrapper] Test setup, not cleaning
[2025-10-22 08:33:18] 2025-10-22 06:33:18,327 [wrapper] apfmon messages muted
[2025-10-22 08:33:18] 2025-10-22 06:33:18,329 [wrapper] ==== wrapper stdout END ====
[2025-10-22 08:33:18] 2025-10-22 06:33:18,331 [wrapper] ==== wrapper stderr END ====
[2025-10-22 08:33:18]  *** Error codes and diagnostics ***
[2025-10-22 08:33:18]     "exeErrorCode": 0,
[2025-10-22 08:33:18]     "exeErrorDiag": "",
[2025-10-22 08:33:18]     "pilotErrorCode": 0,
[2025-10-22 08:33:18]     "pilotErrorDiag": "",
[2025-10-22 08:33:18]  *** Listing of results directory ***
[2025-10-22 08:33:18] total 432284
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc    557409 Oct 21 08:00 pilot3.tar.gz
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc      5112 Oct 21 08:23 queuedata.json
[2025-10-22 08:33:18] -rwx------ 1 boinc boinc     36292 Oct 21 08:26 runpilot2-wrapper.sh
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc       100 Oct 22 07:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 08:33:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 07:45 run_atlas
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc       105 Oct 22 07:45 job.xml
[2025-10-22 08:33:18] -rw-r--r-- 2 boinc boinc 230539002 Oct 22 07:45 EVNT.46771634._002488.pool.root.1
[2025-10-22 08:33:18] -rw-r--r-- 2 boinc boinc     15120 Oct 22 07:45 start_atlas.sh
[2025-10-22 08:33:18] drwxrwx--x 2 boinc boinc        68 Oct 22 07:45 shared
[2025-10-22 08:33:18] -rw-r--r-- 2 boinc boinc    569679 Oct 22 07:45 input.tar.gz
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc      6532 Oct 22 07:45 init_data.xml
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc         0 Oct 22 07:45 boinc_lockfile
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc      2560 Oct 22 07:45 pandaJob.out
[2025-10-22 08:33:18] -rw------- 1 boinc boinc    978464 Oct 22 07:45 agis_schedconf.cvmfs.json
[2025-10-22 08:33:18] -rw------- 1 boinc boinc   1560740 Oct 22 07:45 agis_ddmendpoints.agis.ALL.json
[2025-10-22 08:33:18] drwx------ 5 boinc boinc      4096 Oct 22 07:45 pilot3
[2025-10-22 08:33:18] -rw------- 1 boinc boinc 206627797 Oct 22 08:31 HITS.46771637._063058.pool.root.1
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc       529 Oct 22 08:31 boinc_task_state.xml
[2025-10-22 08:33:18] -rw------- 1 boinc boinc      1033 Oct 22 08:32 memory_monitor_summary.json
[2025-10-22 08:33:18] -rw------- 1 boinc boinc    370317 Oct 22 08:32 log.46771637._063058.job.log.tgz.1
[2025-10-22 08:33:18] -rw------- 1 boinc boinc      7800 Oct 22 08:32 heartbeat.json
[2025-10-22 08:33:18] -rw------- 1 boinc boinc        95 Oct 22 08:32 pilot_heartbeat.json
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc      8192 Oct 22 08:33 boinc_mmap_file
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc        27 Oct 22 08:33 wrapper_checkpoint.txt
[2025-10-22 08:33:18] -rw------- 1 boinc boinc      4749 Oct 22 08:33 pilotlog.txt
[2025-10-22 08:33:18] -rw------- 1 boinc boinc    434015 Oct 22 08:33 log.46771637._063058.job.log.1
[2025-10-22 08:33:18] -rw------- 1 boinc boinc       357 Oct 22 08:33 output.list
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc       620 Oct 22 08:33 runtime_log
[2025-10-22 08:33:18] -rw------- 1 boinc boinc    819200 Oct 22 08:33 result.tar.gz
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc      8727 Oct 22 08:33 runtime_log.err
[2025-10-22 08:33:18] -rw------- 1 boinc boinc       654 Oct 22 08:33 qQ6NDm0zKV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmp2eMDmPTmhlm.diag
[2025-10-22 08:33:18] -rw-r--r-- 1 boinc boinc     21909 Oct 22 08:33 stderr.txt
[2025-10-22 08:33:18] HITS file was successfully produced:
[2025-10-22 08:33:18] -rw------- 1 boinc boinc 206627797 Oct 22 08:31 shared/HITS.pool.root.1
[2025-10-22 08:33:18]  *** Contents of shared directory: ***
[2025-10-22 08:33:18] total 428300
[2025-10-22 08:33:18] -rw-r--r-- 2 boinc boinc 230539002 Oct 22 07:45 ATLAS.root_0
[2025-10-22 08:33:18] -rw-r--r-- 2 boinc boinc     15120 Oct 22 07:45 start_atlas.sh
[2025-10-22 08:33:18] -rw-r--r-- 2 boinc boinc    569679 Oct 22 07:45 input.tar.gz
[2025-10-22 08:33:18] -rw------- 1 boinc boinc 206627797 Oct 22 08:31 HITS.pool.root.1
[2025-10-22 08:33:18] -rw------- 1 boinc boinc    819200 Oct 22 08:33 result.tar.gz
08:33:20 (3419519): run_atlas exited; CPU time 29943.118521
08:33:20 (3419519): called boinc_finish(0)

</stderr_txt>
]]>

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