Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:40:56 (1162379): wrapper (7.7.26015): starting
00:40:56 (1162379): wrapper: running run_atlas (--nthreads 3)
[2025-10-22 00:40:56] Arguments: --nthreads 3
[2025-10-22 00:40:56] Threads: 3
[2025-10-22 00:40:56] Checking for CVMFS
[2025-10-22 00:40:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 00:40:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 00:40:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 00:40:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 00:40:56] 2.9.2.0 788955 1277 77696 151974 2 57 31285735 36864001 0 130560 0 985299 99.989 49280 2459 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-22 00:40:56] CVMFS is ok
[2025-10-22 00:40:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 00:40:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 00:40:56] Further information can be found at the LHC@home message board.
[2025-10-22 00:40:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 00:40:56] Checking for apptainer binary...
[2025-10-22 00:40:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 00:40:56] Running /usr/bin/apptainer --version
[2025-10-22 00:40:56] apptainer version 1.4.1-1.1
[2025-10-22 00:40:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 00:40:56] magicA161
[2025-10-22 00:40:56] apptainer works
[2025-10-22 00:40:56] Set ATHENA_PROC_NUMBER=3
[2025-10-22 00:40:56] Set ATHENA_CORE_NUMBER=3
[2025-10-22 00:40:56] Starting ATLAS job with PandaID=6852955309
[2025-10-22 00:40:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 02:15:16]  *** The last 200 lines of the pilot log: ***
[2025-10-22 02:15:16] 2025-10-22 00:14:23,013 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,013 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,013 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,013 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,013 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,013 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,013 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,013 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,014 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,014 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,014 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,014 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 02:15:16] 2025-10-22 00:14:23,014 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,014 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 02:15:16] 2025-10-22 00:14:23,014 | INFO     | job 6852955309 has completed (purged errors)
[2025-10-22 02:15:16] 2025-10-22 00:14:23,014 | INFO     | overall cleanup function is called
[2025-10-22 02:15:16] 2025-10-22 00:14:24,021 | INFO     | --- collectZombieJob: --- 10, [1172541]
[2025-10-22 02:15:16] 2025-10-22 00:14:24,021 | INFO     | zombie collector waiting for pid 1172541
[2025-10-22 02:15:16] 2025-10-22 00:14:24,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 02:15:16] 2025-10-22 00:14:24,021 | INFO     | collected zombie processes
[2025-10-22 02:15:16] 2025-10-22 00:14:24,021 | INFO     | will attempt to kill all subprocesses of pid=1172541
[2025-10-22 02:15:16] 2025-10-22 00:14:24,064 | INFO     | process IDs to be killed: [1172541] (in reverse order)
[2025-10-22 02:15:16] 2025-10-22 00:14:24,089 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 02:15:16] 2025-10-22 00:14:24,089 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 02:15:16] 2025-10-22 00:14:24,091 | INFO     | did not find any defunct processes belonging to 1172541
[2025-10-22 02:15:16] 2025-10-22 00:14:24,092 | INFO     | did not find any defunct processes belonging to 1172541
[2025-10-22 02:15:16] 2025-10-22 00:14:24,092 | INFO     | ready for new job
[2025-10-22 02:15:16] 2025-10-22 00:14:24,092 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 02:15:16] 2025-10-22 00:14:24,093 | INFO     | ***************************************
[2025-10-22 02:15:16] 2025-10-22 00:14:24,093 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 02:15:16] 2025-10-22 00:14:24,093 | INFO     | ***************************************
[2025-10-22 02:15:16] 2025-10-22 00:14:24,093 | INFO     | 
[2025-10-22 02:15:16] 2025-10-22 00:14:24,093 | INFO     | architecture information:
[2025-10-22 02:15:16] 2025-10-22 00:14:24,094 | INFO     | executing command: cat /etc/os-release
[2025-10-22 02:15:16] 2025-10-22 00:14:24,102 | INFO     | cat /etc/os-release:
[2025-10-22 02:15:16] NAME="CentOS Linux"
[2025-10-22 02:15:16] VERSION="7 (Core)"
[2025-10-22 02:15:16] ID="centos"
[2025-10-22 02:15:16] ID_LIKE="rhel fedora"
[2025-10-22 02:15:16] VERSION_ID="7"
[2025-10-22 02:15:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 02:15:16] ANSI_COLOR="0;31"
[2025-10-22 02:15:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 02:15:16] HOME_URL="https://www.centos.org/"
[2025-10-22 02:15:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 02:15:16] 
[2025-10-22 02:15:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 02:15:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 02:15:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 02:15:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 02:15:16] 
[2025-10-22 02:15:16] 2025-10-22 00:14:24,103 | INFO     | ***************************************
[2025-10-22 02:15:16] 2025-10-22 00:14:24,605 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-22 02:15:16] 2025-10-22 00:14:24,617 | INFO     | sufficient remaining disk space (373293056000 B)
[2025-10-22 02:15:16] 2025-10-22 00:14:24,617 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 02:15:16] 2025-10-22 00:14:24,618 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 02:15:16] 2025-10-22 00:14:24,618 | INFO     | update_server=False
[2025-10-22 02:15:16] 2025-10-22 00:14:24,618 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 02:15:16] 2025-10-22 00:14:24,618 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 02:15:16] 2025-10-22 00:14:24,618 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 02:15:16] 2025-10-22 00:14:24,618 | INFO     | aborting loop
[2025-10-22 02:15:16] 2025-10-22 00:14:25,136 | INFO     | all data control threads have been joined
[2025-10-22 02:15:16] 2025-10-22 00:14:25,332 | INFO     | all payload control threads have been joined
[2025-10-22 02:15:16] 2025-10-22 00:14:25,557 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 02:15:16] 2025-10-22 00:14:25,621 | INFO     | [job] retrieve thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:25,621 | INFO     | [job] queue monitor thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:25,621 | INFO     | [job] job monitor thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:25,952 | INFO     | all job control threads have been joined
[2025-10-22 02:15:16] 2025-10-22 00:14:26,078 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:26,113 | INFO     | [payload] failed_post thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:26,142 | INFO     | [data] control thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:26,338 | INFO     | [payload] control thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:26,366 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:26,681 | INFO     | [data] copytool_in thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:26,809 | INFO     | [payload] validate_post thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:26,958 | INFO     | [job] control thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:27,023 | INFO     | [job] validate thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:27,045 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:27,106 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:27,563 | INFO     | [data] copytool_out thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:27,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 02:15:16] 2025-10-22 00:14:31,843 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 02:15:16] 2025-10-22 00:14:55,715 | INFO     | PID=1166101 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 02:15:16] 2025-10-22 00:14:55,715 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 02:15:16] 2025-10-22 00:14:55,715 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 02:15:16] 2025-10-22 00:14:55,715 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 02:15:16] 2025-10-22 00:15:09,437 | INFO     | [monitor] cgroup control has ended
[2025-10-22 02:15:16] 2025-10-22 00:15:11,008 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140126179940160)>', '<ExcThread(monitor, started 140125690377984)>']
[2025-10-22 02:15:16] 2025-10-22 00:15:11,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 02:15:16] 2025-10-22 00:15:11,797 | INFO     | [monitor] control thread has ended
[2025-10-22 02:15:16] 2025-10-22 00:15:16,034 | INFO     | all workflow threads have been joined
[2025-10-22 02:15:16] 2025-10-22 00:15:16,034 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 02:15:16] 2025-10-22 00:15:16,034 | INFO     | traces error code: 0
[2025-10-22 02:15:16] 2025-10-22 00:15:16,035 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 02:15:16] 2025-10-22 00:15:16,128 [wrapper] ==== pilot stdout END ====
[2025-10-22 02:15:16] 2025-10-22 00:15:16,130 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 02:15:16] 2025-10-22 00:15:16,133 [wrapper] pilotpid: 1166101
[2025-10-22 02:15:16] 2025-10-22 00:15:16,135 [wrapper] Pilot exit status: 0
[2025-10-22 02:15:16] 2025-10-22 00:15:16,143 [wrapper] pandaids: 6852955309
[2025-10-22 02:15:16] 2025-10-22 00:15:16,162 [wrapper] cleanup supervisor_pilot 1184757 1166102
[2025-10-22 02:15:16] 2025-10-22 00:15:16,164 [wrapper] Test setup, not cleaning
[2025-10-22 02:15:16] 2025-10-22 00:15:16,167 [wrapper] apfmon messages muted
[2025-10-22 02:15:16] 2025-10-22 00:15:16,169 [wrapper] ==== wrapper stdout END ====
[2025-10-22 02:15:16] 2025-10-22 00:15:16,172 [wrapper] ==== wrapper stderr END ====
[2025-10-22 02:15:16]  *** Error codes and diagnostics ***
[2025-10-22 02:15:16]     "exeErrorCode": 0,
[2025-10-22 02:15:16]     "exeErrorDiag": "",
[2025-10-22 02:15:16]     "pilotErrorCode": 0,
[2025-10-22 02:15:16]     "pilotErrorDiag": "",
[2025-10-22 02:15:16]  *** Listing of results directory ***
[2025-10-22 02:15:16] total 441320
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc    557409 Oct 21 01:48 pilot3.tar.gz
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc      5112 Oct 21 02:23 queuedata.json
[2025-10-22 02:15:16] -rwx------ 1 boinc boinc     36292 Oct 21 02:25 runpilot2-wrapper.sh
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc       100 Oct 22 00:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 02:15:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 00:40 run_atlas
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc       105 Oct 22 00:40 job.xml
[2025-10-22 02:15:16] -rw-r--r-- 2 boinc boinc 226470682 Oct 22 00:40 EVNT.46771634._002236.pool.root.1
[2025-10-22 02:15:16] drwxrwx--x 2 boinc boinc      4096 Oct 22 00:40 shared
[2025-10-22 02:15:16] -rw-r--r-- 2 boinc boinc    569681 Oct 22 00:40 input.tar.gz
[2025-10-22 02:15:16] -rw-r--r-- 2 boinc boinc     15120 Oct 22 00:40 start_atlas.sh
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc         0 Oct 22 00:40 boinc_setup_complete
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc      6449 Oct 22 00:40 init_data.xml
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc         0 Oct 22 00:40 boinc_lockfile
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc      2560 Oct 22 00:40 pandaJob.out
[2025-10-22 02:15:16] -rw------- 1 boinc boinc    978456 Oct 22 00:41 agis_schedconf.cvmfs.json
[2025-10-22 02:15:16] -rw------- 1 boinc boinc   1560740 Oct 22 00:41 agis_ddmendpoints.agis.ALL.json
[2025-10-22 02:15:16] drwx------ 5 boinc boinc      4096 Oct 22 00:41 pilot3
[2025-10-22 02:15:16] -rw------- 1 boinc boinc 219375902 Oct 22 02:13 HITS.46771637._057029.pool.root.1
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc       529 Oct 22 02:14 boinc_task_state.xml
[2025-10-22 02:15:16] -rw------- 1 boinc boinc      1018 Oct 22 02:14 memory_monitor_summary.json
[2025-10-22 02:15:16] -rw------- 1 boinc boinc    270147 Oct 22 02:14 log.46771637._057029.job.log.tgz.1
[2025-10-22 02:15:16] -rw------- 1 boinc boinc      7761 Oct 22 02:14 heartbeat.json
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc      8192 Oct 22 02:14 boinc_mmap_file
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc        27 Oct 22 02:14 wrapper_checkpoint.txt
[2025-10-22 02:15:16] -rw------- 1 boinc boinc        95 Oct 22 02:14 pilot_heartbeat.json
[2025-10-22 02:15:16] -rw------- 1 boinc boinc      4752 Oct 22 02:15 pilotlog.txt
[2025-10-22 02:15:16] -rw------- 1 boinc boinc    817973 Oct 22 02:15 log.46771637._057029.job.log.1
[2025-10-22 02:15:16] -rw------- 1 boinc boinc       357 Oct 22 02:15 output.list
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc       620 Oct 22 02:15 runtime_log
[2025-10-22 02:15:16] -rw------- 1 boinc boinc   1105920 Oct 22 02:15 result.tar.gz
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc      8792 Oct 22 02:15 runtime_log.err
[2025-10-22 02:15:16] -rw------- 1 boinc boinc       661 Oct 22 02:15 b0PMDmJNFV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmRMeMDmV2UOgn.diag
[2025-10-22 02:15:16] -rw-r--r-- 1 boinc boinc     12247 Oct 22 02:15 stderr.txt
[2025-10-22 02:15:16] HITS file was successfully produced:
[2025-10-22 02:15:16] -rw------- 1 boinc boinc 219375902 Oct 22 02:13 shared/HITS.pool.root.1
[2025-10-22 02:15:16]  *** Contents of shared directory: ***
[2025-10-22 02:15:16] total 437064
[2025-10-22 02:15:16] -rw-r--r-- 2 boinc boinc 226470682 Oct 22 00:40 ATLAS.root_0
[2025-10-22 02:15:16] -rw-r--r-- 2 boinc boinc    569681 Oct 22 00:40 input.tar.gz
[2025-10-22 02:15:16] -rw-r--r-- 2 boinc boinc     15120 Oct 22 00:40 start_atlas.sh
[2025-10-22 02:15:16] -rw------- 1 boinc boinc 219375902 Oct 22 02:13 HITS.pool.root.1
[2025-10-22 02:15:16] -rw------- 1 boinc boinc   1105920 Oct 22 02:15 result.tar.gz
02:15:17 (1162379): run_atlas exited; CPU time 16161.393016
02:15:17 (1162379): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN