Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:12:33 (1136926): wrapper (7.7.26015): starting
23:12:33 (1136926): wrapper: running run_atlas (--nthreads 3)
[2025-10-21 23:12:33] Arguments: --nthreads 3
[2025-10-21 23:12:33] Threads: 3
[2025-10-21 23:12:33] Checking for CVMFS
[2025-10-21 23:12:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 23:12:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 23:12:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 23:12:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 23:12:34] 2.9.2.0 788955 1188 77068 151970 2 57 31258900 36864001 0 130560 0 919566 99.989 43920 2576 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 23:12:34] CVMFS is ok
[2025-10-21 23:12:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 23:12:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 23:12:34] Further information can be found at the LHC@home message board.
[2025-10-21 23:12:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 23:12:34] Checking for apptainer binary...
[2025-10-21 23:12:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 23:12:34] Running /usr/bin/apptainer --version
[2025-10-21 23:12:34] apptainer version 1.4.1-1.1
[2025-10-21 23:12:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 23:12:34] magicA161
[2025-10-21 23:12:34] apptainer works
[2025-10-21 23:12:34] Set ATHENA_PROC_NUMBER=3
[2025-10-21 23:12:34] Set ATHENA_CORE_NUMBER=3
[2025-10-21 23:12:34] Starting ATLAS job with PandaID=6852991106
[2025-10-21 23:12:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 00:40:51]  *** The last 200 lines of the pilot log: ***
[2025-10-22 00:40:51] 2025-10-21 22:40:31,022 | INFO     | job 6852991106 has completed (purged errors)
[2025-10-22 00:40:51] 2025-10-21 22:40:31,022 | INFO     | overall cleanup function is called
[2025-10-22 00:40:51] 2025-10-21 22:40:32,028 | INFO     | --- collectZombieJob: --- 10, [1147082]
[2025-10-22 00:40:51] 2025-10-21 22:40:32,029 | INFO     | zombie collector waiting for pid 1147082
[2025-10-22 00:40:51] 2025-10-21 22:40:32,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 00:40:51] 2025-10-21 22:40:32,029 | INFO     | collected zombie processes
[2025-10-22 00:40:51] 2025-10-21 22:40:32,029 | INFO     | will attempt to kill all subprocesses of pid=1147082
[2025-10-22 00:40:51] 2025-10-21 22:40:32,071 | INFO     | process IDs to be killed: [1147082] (in reverse order)
[2025-10-22 00:40:51] 2025-10-21 22:40:32,097 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 00:40:51] 2025-10-21 22:40:32,097 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 00:40:51] 2025-10-21 22:40:32,099 | INFO     | did not find any defunct processes belonging to 1147082
[2025-10-22 00:40:51] 2025-10-21 22:40:32,100 | INFO     | did not find any defunct processes belonging to 1147082
[2025-10-22 00:40:51] 2025-10-21 22:40:32,100 | INFO     | ready for new job
[2025-10-22 00:40:51] 2025-10-21 22:40:32,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 00:40:51] 2025-10-21 22:40:32,101 | INFO     | ***************************************
[2025-10-22 00:40:51] 2025-10-21 22:40:32,101 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 00:40:51] 2025-10-21 22:40:32,101 | INFO     | ***************************************
[2025-10-22 00:40:51] 2025-10-21 22:40:32,101 | INFO     | 
[2025-10-22 00:40:51] 2025-10-21 22:40:32,101 | INFO     | architecture information:
[2025-10-22 00:40:51] 2025-10-21 22:40:32,101 | INFO     | executing command: cat /etc/os-release
[2025-10-22 00:40:51] 2025-10-21 22:40:32,111 | INFO     | cat /etc/os-release:
[2025-10-22 00:40:51] NAME="CentOS Linux"
[2025-10-22 00:40:51] VERSION="7 (Core)"
[2025-10-22 00:40:51] ID="centos"
[2025-10-22 00:40:51] ID_LIKE="rhel fedora"
[2025-10-22 00:40:51] VERSION_ID="7"
[2025-10-22 00:40:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 00:40:51] ANSI_COLOR="0;31"
[2025-10-22 00:40:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 00:40:51] HOME_URL="https://www.centos.org/"
[2025-10-22 00:40:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 00:40:51] 
[2025-10-22 00:40:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 00:40:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 00:40:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 00:40:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 00:40:51] 
[2025-10-22 00:40:51] 2025-10-21 22:40:32,111 | INFO     | ***************************************
[2025-10-22 00:40:51] 2025-10-21 22:40:32,611 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-22 00:40:51] 2025-10-21 22:40:32,624 | INFO     | sufficient remaining disk space (373308784640 B)
[2025-10-22 00:40:51] 2025-10-21 22:40:32,624 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 00:40:51] 2025-10-21 22:40:32,624 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 00:40:51] 2025-10-21 22:40:32,624 | INFO     | update_server=False
[2025-10-22 00:40:51] 2025-10-21 22:40:32,624 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 00:40:51] 2025-10-21 22:40:32,625 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-22 00:40:51] 2025-10-21 22:40:32,625 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 00:40:51] 2025-10-21 22:40:32,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 00:40:51] 2025-10-21 22:40:32,625 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 00:40:51] 2025-10-21 22:40:32,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 00:40:51] 2025-10-21 22:40:32,625 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 00:40:51] 2025-10-21 22:40:33,157 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 00:40:51] 2025-10-21 22:40:33,157 | INFO     | aborting loop
[2025-10-22 00:40:51] 2025-10-21 22:40:33,346 | INFO     | all payload control threads have been joined
[2025-10-22 00:40:51] 2025-10-21 22:40:33,356 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 00:40:51] 2025-10-21 22:40:33,612 | INFO     | all data control threads have been joined
[2025-10-22 00:40:51] 2025-10-21 22:40:33,630 | INFO     | [job] retrieve thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:33,631 | INFO     | [job] queue monitor thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:33,654 | INFO     | [data] copytool_in thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:33,995 | INFO     | [job] validate thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:34,050 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:34,057 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:34,061 | INFO     | [payload] validate_post thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:34,163 | INFO     | [job] job monitor thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:34,220 | INFO     | all job control threads have been joined
[2025-10-22 00:40:51] 2025-10-21 22:40:34,347 | INFO     | [payload] control thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:34,618 | INFO     | [data] control thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:35,034 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:35,063 | INFO     | [payload] failed_post thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:35,226 | INFO     | [job] control thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:35,361 | INFO     | [data] copytool_out thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:36,632 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:43,098 | INFO     | job.realtimelogging is not enabled
[2025-10-22 00:40:51] 2025-10-21 22:40:44,104 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 00:40:51] 2025-10-21 22:40:46,024 | INFO     | [monitor] cgroup control has ended
[2025-10-22 00:40:51] 2025-10-21 22:40:46,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191860610880)>', '<ExcThread(monitor, started 140191507388160)>']
[2025-10-22 00:40:51] 2025-10-21 22:40:46,696 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 00:40:51] 2025-10-21 22:40:46,696 | INFO     | [monitor] control thread has ended
[2025-10-22 00:40:51] 2025-10-21 22:40:51,628 | INFO     | all workflow threads have been joined
[2025-10-22 00:40:51] 2025-10-21 22:40:51,629 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 00:40:51] 2025-10-21 22:40:51,629 | INFO     | traces error code: 0
[2025-10-22 00:40:51] 2025-10-21 22:40:51,629 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 00:40:51] 2025-10-21 22:40:51,680 [wrapper] ==== pilot stdout END ====
[2025-10-22 00:40:51] 2025-10-21 22:40:51,682 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 00:40:51] 2025-10-21 22:40:51,685 [wrapper] pilotpid: 1140646
[2025-10-22 00:40:51] 2025-10-21 22:40:51,687 [wrapper] Pilot exit status: 0
[2025-10-22 00:40:51] 2025-10-21 22:40:51,695 [wrapper] pandaids: 6852991106
[2025-10-22 00:40:51] 2025-10-21 22:40:51,711 [wrapper] cleanup supervisor_pilot 1159558 1140647
[2025-10-22 00:40:51] 2025-10-21 22:40:51,714 [wrapper] Test setup, not cleaning
[2025-10-22 00:40:51] 2025-10-21 22:40:51,716 [wrapper] apfmon messages muted
[2025-10-22 00:40:51] 2025-10-21 22:40:51,719 [wrapper] ==== wrapper stdout END ====
[2025-10-22 00:40:51] 2025-10-21 22:40:51,721 [wrapper] ==== wrapper stderr END ====
[2025-10-22 00:40:51]  *** Error codes and diagnostics ***
[2025-10-22 00:40:51]     "exeErrorCode": 0,
[2025-10-22 00:40:51]     "exeErrorDiag": "",
[2025-10-22 00:40:51]     "pilotErrorCode": 0,
[2025-10-22 00:40:51]     "pilotErrorDiag": "",
[2025-10-22 00:40:51]  *** Listing of results directory ***
[2025-10-22 00:40:51] total 433872
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc    557409 Oct 21 09:34 pilot3.tar.gz
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc      5112 Oct 21 09:50 queuedata.json
[2025-10-22 00:40:51] -rwx------ 1 boinc boinc     36292 Oct 21 09:50 runpilot2-wrapper.sh
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc       100 Oct 21 23:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 00:40:51] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 23:12 run_atlas
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc       105 Oct 21 23:12 job.xml
[2025-10-22 00:40:51] -rw-r--r-- 2 boinc boinc 229635574 Oct 21 23:12 EVNT.46771634._002511.pool.root.1
[2025-10-22 00:40:51] drwxrwx--x 2 boinc boinc      4096 Oct 21 23:12 shared
[2025-10-22 00:40:51] -rw-r--r-- 2 boinc boinc    569677 Oct 21 23:12 input.tar.gz
[2025-10-22 00:40:51] -rw-r--r-- 2 boinc boinc     15120 Oct 21 23:12 start_atlas.sh
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc         0 Oct 21 23:12 boinc_setup_complete
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc      6449 Oct 21 23:12 init_data.xml
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc         0 Oct 21 23:12 boinc_lockfile
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc      2560 Oct 21 23:12 pandaJob.out
[2025-10-22 00:40:51] -rw------- 1 boinc boinc    978456 Oct 21 23:12 agis_schedconf.cvmfs.json
[2025-10-22 00:40:51] -rw------- 1 boinc boinc   1560740 Oct 21 23:12 agis_ddmendpoints.agis.ALL.json
[2025-10-22 00:40:51] drwx------ 5 boinc boinc      4096 Oct 21 23:12 pilot3
[2025-10-22 00:40:51] -rw------- 1 boinc boinc        95 Oct 22 00:40 pilot_heartbeat.json
[2025-10-22 00:40:51] -rw------- 1 boinc boinc 208706975 Oct 22 00:40 HITS.46771637._063572.pool.root.1
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc       529 Oct 22 00:40 boinc_task_state.xml
[2025-10-22 00:40:51] -rw------- 1 boinc boinc      1017 Oct 22 00:40 memory_monitor_summary.json
[2025-10-22 00:40:51] -rw------- 1 boinc boinc    254953 Oct 22 00:40 log.46771637._063572.job.log.tgz.1
[2025-10-22 00:40:51] -rw------- 1 boinc boinc      7755 Oct 22 00:40 heartbeat.json
[2025-10-22 00:40:51] -rw------- 1 boinc boinc      4628 Oct 22 00:40 pilotlog.txt
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc        27 Oct 22 00:40 wrapper_checkpoint.txt
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc      8192 Oct 22 00:40 boinc_mmap_file
[2025-10-22 00:40:51] -rw------- 1 boinc boinc    769656 Oct 22 00:40 log.46771637._063572.job.log.1
[2025-10-22 00:40:51] -rw------- 1 boinc boinc       357 Oct 22 00:40 output.list
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc       620 Oct 22 00:40 runtime_log
[2025-10-22 00:40:51] -rw------- 1 boinc boinc   1044480 Oct 22 00:40 result.tar.gz
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc      8792 Oct 22 00:40 runtime_log.err
[2025-10-22 00:40:51] -rw------- 1 boinc boinc       661 Oct 22 00:40 RnFMDmuJMV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmt7eMDmhRSURn.diag
[2025-10-22 00:40:51] -rw-r--r-- 1 boinc boinc     10828 Oct 22 00:40 stderr.txt
[2025-10-22 00:40:51] HITS file was successfully produced:
[2025-10-22 00:40:51] -rw------- 1 boinc boinc 208706975 Oct 22 00:40 shared/HITS.pool.root.1
[2025-10-22 00:40:51]  *** Contents of shared directory: ***
[2025-10-22 00:40:51] total 429676
[2025-10-22 00:40:51] -rw-r--r-- 2 boinc boinc 229635574 Oct 21 23:12 ATLAS.root_0
[2025-10-22 00:40:51] -rw-r--r-- 2 boinc boinc    569677 Oct 21 23:12 input.tar.gz
[2025-10-22 00:40:51] -rw-r--r-- 2 boinc boinc     15120 Oct 21 23:12 start_atlas.sh
[2025-10-22 00:40:51] -rw------- 1 boinc boinc 208706975 Oct 22 00:40 HITS.pool.root.1
[2025-10-22 00:40:51] -rw------- 1 boinc boinc   1044480 Oct 22 00:40 result.tar.gz
00:40:53 (1136926): run_atlas exited; CPU time 15124.795890
00:40:53 (1136926): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN