Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:20:00 (335223): wrapper (7.7.26015): starting
23:20:00 (335223): wrapper: running run_atlas (--nthreads 3)
[2025-10-21 23:20:00] Arguments: --nthreads 3
[2025-10-21 23:20:00] Threads: 3
[2025-10-21 23:20:00] Checking for CVMFS
[2025-10-21 23:20:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 23:20:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 23:20:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 23:20:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 23:20:00] 2.9.2.0 4130834 1315 77228 151972 3 56 32012529 36864001 0 130560 0 1055422 99.988 51136 2218 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 23:20:00] CVMFS is ok
[2025-10-21 23:20:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 23:20:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 23:20:00] Further information can be found at the LHC@home message board.
[2025-10-21 23:20:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 23:20:00] Checking for apptainer binary...
[2025-10-21 23:20:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 23:20:00] Running /usr/bin/apptainer --version
[2025-10-21 23:20:00] apptainer version 1.4.1-1.1
[2025-10-21 23:20:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 23:20:00] magicA161a
[2025-10-21 23:20:00] apptainer works
[2025-10-21 23:20:00] Set ATHENA_PROC_NUMBER=3
[2025-10-21 23:20:00] Set ATHENA_CORE_NUMBER=3
[2025-10-21 23:20:00] Starting ATLAS job with PandaID=6852991011
[2025-10-21 23:20:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 00:49:36]  *** The last 200 lines of the pilot log: ***
[2025-10-22 00:49:36] 2025-10-21 22:49:03,909 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 00:49:36] 2025-10-21 22:49:03,909 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 00:49:36] 2025-10-21 22:49:03,909 | INFO     | job 6852991011 has completed (purged errors)
[2025-10-22 00:49:36] 2025-10-21 22:49:03,909 | INFO     | overall cleanup function is called
[2025-10-22 00:49:36] 2025-10-21 22:49:04,916 | INFO     | --- collectZombieJob: --- 10, [345385]
[2025-10-22 00:49:36] 2025-10-21 22:49:04,916 | INFO     | zombie collector waiting for pid 345385
[2025-10-22 00:49:36] 2025-10-21 22:49:04,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 00:49:36] 2025-10-21 22:49:04,916 | INFO     | collected zombie processes
[2025-10-22 00:49:36] 2025-10-21 22:49:04,916 | INFO     | will attempt to kill all subprocesses of pid=345385
[2025-10-22 00:49:36] 2025-10-21 22:49:04,959 | INFO     | process IDs to be killed: [345385] (in reverse order)
[2025-10-22 00:49:36] 2025-10-21 22:49:04,983 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 00:49:36] 2025-10-21 22:49:04,983 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 00:49:36] 2025-10-21 22:49:04,984 | INFO     | did not find any defunct processes belonging to 345385
[2025-10-22 00:49:36] 2025-10-21 22:49:04,986 | INFO     | did not find any defunct processes belonging to 345385
[2025-10-22 00:49:36] 2025-10-21 22:49:04,986 | INFO     | ready for new job
[2025-10-22 00:49:36] 2025-10-21 22:49:04,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 00:49:36] 2025-10-21 22:49:04,986 | INFO     | ***************************************
[2025-10-22 00:49:36] 2025-10-21 22:49:04,986 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 00:49:36] 2025-10-21 22:49:04,986 | INFO     | ***************************************
[2025-10-22 00:49:36] 2025-10-21 22:49:04,986 | INFO     | 
[2025-10-22 00:49:36] 2025-10-21 22:49:04,987 | INFO     | architecture information:
[2025-10-22 00:49:36] 2025-10-21 22:49:04,987 | INFO     | executing command: cat /etc/os-release
[2025-10-22 00:49:36] 2025-10-21 22:49:04,995 | INFO     | cat /etc/os-release:
[2025-10-22 00:49:36] NAME="CentOS Linux"
[2025-10-22 00:49:36] VERSION="7 (Core)"
[2025-10-22 00:49:36] ID="centos"
[2025-10-22 00:49:36] ID_LIKE="rhel fedora"
[2025-10-22 00:49:36] VERSION_ID="7"
[2025-10-22 00:49:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 00:49:36] ANSI_COLOR="0;31"
[2025-10-22 00:49:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 00:49:36] HOME_URL="https://www.centos.org/"
[2025-10-22 00:49:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 00:49:36] 
[2025-10-22 00:49:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 00:49:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 00:49:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 00:49:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 00:49:36] 
[2025-10-22 00:49:36] 2025-10-21 22:49:04,995 | INFO     | ***************************************
[2025-10-22 00:49:36] 2025-10-21 22:49:05,498 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-22 00:49:36] 2025-10-21 22:49:05,511 | INFO     | sufficient remaining disk space (372538081280 B)
[2025-10-22 00:49:36] 2025-10-21 22:49:05,511 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 00:49:36] 2025-10-21 22:49:05,511 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 00:49:36] 2025-10-21 22:49:05,511 | INFO     | update_server=False
[2025-10-22 00:49:36] 2025-10-21 22:49:05,511 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 00:49:36] 2025-10-21 22:49:05,511 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 00:49:36] 2025-10-21 22:49:05,511 | INFO     | aborting loop
[2025-10-22 00:49:36] 2025-10-21 22:49:05,511 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 00:49:36] 2025-10-21 22:49:05,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 00:49:36] 2025-10-21 22:49:05,902 | INFO     | all job control threads have been joined
[2025-10-22 00:49:36] 2025-10-21 22:49:06,043 | INFO     | all payload control threads have been joined
[2025-10-22 00:49:36] 2025-10-21 22:49:06,196 | INFO     | all data control threads have been joined
[2025-10-22 00:49:36] 2025-10-21 22:49:06,224 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 00:49:36] 2025-10-21 22:49:06,517 | INFO     | [job] job monitor thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:06,517 | INFO     | [job] retrieve thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:06,517 | INFO     | [job] queue monitor thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:06,598 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:06,604 | INFO     | [payload] failed_post thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:06,722 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:06,908 | INFO     | [job] control thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:06,951 | INFO     | [data] copytool_in thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:07,049 | INFO     | [payload] control thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:07,202 | INFO     | [data] control thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:07,233 | INFO     | [payload] validate_post thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:07,498 | INFO     | [job] validate thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:07,585 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:07,606 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:08,230 | INFO     | [data] copytool_out thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:09,694 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 00:49:36] 2025-10-21 22:49:12,234 | INFO     | [monitor] cgroup control has ended
[2025-10-22 00:49:36] 2025-10-21 22:49:12,992 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140215431423808)>', '<ExcThread(monitor, started 140214936774400)>']
[2025-10-22 00:49:36] 2025-10-21 22:49:18,008 | INFO     | all workflow threads have been joined
[2025-10-22 00:49:36] 2025-10-21 22:49:18,008 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 00:49:36] 2025-10-21 22:49:18,009 | INFO     | traces error code: 0
[2025-10-22 00:49:36] 2025-10-21 22:49:18,009 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 00:49:36] 2025-10-21 22:49:36,338 | INFO     | PID=338942 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-22 00:49:36] 2025-10-21 22:49:36,338 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 00:49:36] 2025-10-21 22:49:36,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 00:49:36] 2025-10-21 22:49:36,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 00:49:36] 2025-10-21 22:49:36,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 00:49:36] 2025-10-21 22:49:36,339 | CRITICAL | thread 'MainThread' is not alive
[2025-10-22 00:49:36] 2025-10-21 22:49:36,339 | INFO     | [monitor] control thread has ended
[2025-10-22 00:49:36] 2025-10-21 22:49:36,388 [wrapper] ==== pilot stdout END ====
[2025-10-22 00:49:36] 2025-10-21 22:49:36,390 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 00:49:36] 2025-10-21 22:49:36,392 [wrapper] pilotpid: 338942
[2025-10-22 00:49:36] 2025-10-21 22:49:36,395 [wrapper] Pilot exit status: 0
[2025-10-22 00:49:36] 2025-10-21 22:49:36,402 [wrapper] pandaids: 6852991011
[2025-10-22 00:49:36] 2025-10-21 22:49:36,417 [wrapper] cleanup supervisor_pilot  357598 338943
[2025-10-22 00:49:36] 2025-10-21 22:49:36,419 [wrapper] Test setup, not cleaning
[2025-10-22 00:49:36] 2025-10-21 22:49:36,422 [wrapper] apfmon messages muted
[2025-10-22 00:49:36] 2025-10-21 22:49:36,424 [wrapper] ==== wrapper stdout END ====
[2025-10-22 00:49:36] 2025-10-21 22:49:36,426 [wrapper] ==== wrapper stderr END ====
[2025-10-22 00:49:36]  *** Error codes and diagnostics ***
[2025-10-22 00:49:36]     "exeErrorCode": 0,
[2025-10-22 00:49:36]     "exeErrorDiag": "",
[2025-10-22 00:49:36]     "pilotErrorCode": 0,
[2025-10-22 00:49:36]     "pilotErrorDiag": "",
[2025-10-22 00:49:36]  *** Listing of results directory ***
[2025-10-22 00:49:36] total 435068
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc    557409 Oct 21 09:34 pilot3.tar.gz
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc      5112 Oct 21 09:40 queuedata.json
[2025-10-22 00:49:36] -rwx------ 1 boinc boinc     36292 Oct 21 09:40 runpilot2-wrapper.sh
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc       100 Oct 21 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 00:49:36] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 23:20 run_atlas
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc       105 Oct 21 23:20 job.xml
[2025-10-22 00:49:36] -rw-r--r-- 2 boinc boinc 231154325 Oct 21 23:20 EVNT.46771634._002505.pool.root.1
[2025-10-22 00:49:36] -rw-r--r-- 2 boinc boinc    569679 Oct 21 23:20 input.tar.gz
[2025-10-22 00:49:36] -rw-r--r-- 2 boinc boinc     15120 Oct 21 23:20 start_atlas.sh
[2025-10-22 00:49:36] drwxrwx--x 2 boinc boinc      4096 Oct 21 23:20 shared
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc         0 Oct 21 23:20 boinc_setup_complete
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc      6448 Oct 21 23:20 init_data.xml
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc         0 Oct 21 23:20 boinc_lockfile
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc      2560 Oct 21 23:20 pandaJob.out
[2025-10-22 00:49:36] -rw------- 1 boinc boinc    978456 Oct 21 23:20 agis_schedconf.cvmfs.json
[2025-10-22 00:49:36] -rw------- 1 boinc boinc   1560740 Oct 21 23:20 agis_ddmendpoints.agis.ALL.json
[2025-10-22 00:49:36] drwx------ 5 boinc boinc      4096 Oct 21 23:20 pilot3
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc       529 Oct 22 00:48 boinc_task_state.xml
[2025-10-22 00:49:36] -rw------- 1 boinc boinc 208377972 Oct 22 00:48 HITS.46771637._063477.pool.root.1
[2025-10-22 00:49:36] -rw------- 1 boinc boinc      1017 Oct 22 00:48 memory_monitor_summary.json
[2025-10-22 00:49:36] -rw------- 1 boinc boinc    264280 Oct 22 00:48 log.46771637._063477.job.log.tgz.1
[2025-10-22 00:49:36] -rw------- 1 boinc boinc      7756 Oct 22 00:49 heartbeat.json
[2025-10-22 00:49:36] -rw------- 1 boinc boinc       816 Oct 22 00:49 pilotlog.txt
[2025-10-22 00:49:36] -rw------- 1 boinc boinc        95 Oct 22 00:49 pilot_heartbeat.json
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc      8192 Oct 22 00:49 boinc_mmap_file
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc        27 Oct 22 00:49 wrapper_checkpoint.txt
[2025-10-22 00:49:36] -rw------- 1 boinc boinc    777878 Oct 22 00:49 log.46771637._063477.job.log.1
[2025-10-22 00:49:36] -rw------- 1 boinc boinc       357 Oct 22 00:49 output.list
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc       620 Oct 22 00:49 runtime_log
[2025-10-22 00:49:36] -rw------- 1 boinc boinc   1064960 Oct 22 00:49 result.tar.gz
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc      8797 Oct 22 00:49 runtime_log.err
[2025-10-22 00:49:36] -rw------- 1 boinc boinc       662 Oct 22 00:49 PQmLDmHAMV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYs1NDmfObG6n.diag
[2025-10-22 00:49:36] -rw-r--r-- 1 boinc boinc     11101 Oct 22 00:49 stderr.txt
[2025-10-22 00:49:36] HITS file was successfully produced:
[2025-10-22 00:49:36] -rw------- 1 boinc boinc 208377972 Oct 22 00:48 shared/HITS.pool.root.1
[2025-10-22 00:49:36]  *** Contents of shared directory: ***
[2025-10-22 00:49:36] total 430860
[2025-10-22 00:49:36] -rw-r--r-- 2 boinc boinc 231154325 Oct 21 23:20 ATLAS.root_0
[2025-10-22 00:49:36] -rw-r--r-- 2 boinc boinc    569679 Oct 21 23:20 input.tar.gz
[2025-10-22 00:49:36] -rw-r--r-- 2 boinc boinc     15120 Oct 21 23:20 start_atlas.sh
[2025-10-22 00:49:36] -rw------- 1 boinc boinc 208377972 Oct 22 00:48 HITS.pool.root.1
[2025-10-22 00:49:36] -rw------- 1 boinc boinc   1064960 Oct 22 00:49 result.tar.gz
00:49:38 (335223): run_atlas exited; CPU time 15412.679343
00:49:38 (335223): called boinc_finish(0)

</stderr_txt>
]]>

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