Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:28:25 (3667058): wrapper (7.7.26015): starting
00:28:25 (3667058): wrapper: running run_atlas (--nthreads 2)
[2025-10-22 00:28:25] Arguments: --nthreads 2
[2025-10-22 00:28:25] Threads: 2
[2025-10-22 00:28:25] Checking for CVMFS
[2025-10-22 00:28:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-22 00:28:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-22 00:28:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-22 00:28:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-22 00:28:25] 2.9.2.0 3374409 1371 56516 151974 3 57 20826063 36864001 0 130560 0 768767 99.985 53375 2505 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-22 00:28:25] CVMFS is ok
[2025-10-22 00:28:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-22 00:28:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-22 00:28:25] Further information can be found at the LHC@home message board.
[2025-10-22 00:28:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-22 00:28:25] Checking for apptainer binary...
[2025-10-22 00:28:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-22 00:28:25] Running /usr/bin/apptainer --version
[2025-10-22 00:28:25] apptainer version 1.4.1-1.1
[2025-10-22 00:28:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-22 00:28:26] atlasA229
[2025-10-22 00:28:26] apptainer works
[2025-10-22 00:28:26] Set ATHENA_PROC_NUMBER=2
[2025-10-22 00:28:26] Set ATHENA_CORE_NUMBER=2
[2025-10-22 00:28:26] Starting ATLAS job with PandaID=6853515248
[2025-10-22 00:28:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-22 02:06:54]  *** The last 200 lines of the pilot log: ***
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-22 02:06:54] 2025-10-22 00:06:00,991 | INFO     | job 6853515248 has completed (purged errors)
[2025-10-22 02:06:54] 2025-10-22 00:06:00,992 | INFO     | overall cleanup function is called
[2025-10-22 02:06:54] 2025-10-22 00:06:01,993 | INFO     | --- collectZombieJob: --- 10, [3677195]
[2025-10-22 02:06:54] 2025-10-22 00:06:01,994 | INFO     | zombie collector waiting for pid 3677195
[2025-10-22 02:06:54] 2025-10-22 00:06:01,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-22 02:06:54] 2025-10-22 00:06:01,994 | INFO     | collected zombie processes
[2025-10-22 02:06:54] 2025-10-22 00:06:01,994 | INFO     | will attempt to kill all subprocesses of pid=3677195
[2025-10-22 02:06:54] 2025-10-22 00:06:02,028 | INFO     | process IDs to be killed: [3677195] (in reverse order)
[2025-10-22 02:06:54] 2025-10-22 00:06:02,049 | WARNING  | found no corresponding commands to process id(s)
[2025-10-22 02:06:54] 2025-10-22 00:06:02,049 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-22 02:06:54] 2025-10-22 00:06:02,049 | INFO     | did not find any defunct processes belonging to 3677195
[2025-10-22 02:06:54] 2025-10-22 00:06:02,050 | INFO     | did not find any defunct processes belonging to 3677195
[2025-10-22 02:06:54] 2025-10-22 00:06:02,050 | INFO     | ready for new job
[2025-10-22 02:06:54] 2025-10-22 00:06:02,050 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-22 02:06:54] 2025-10-22 00:06:02,051 | INFO     | ***************************************
[2025-10-22 02:06:54] 2025-10-22 00:06:02,051 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-22 02:06:54] 2025-10-22 00:06:02,051 | INFO     | ***************************************
[2025-10-22 02:06:54] 2025-10-22 00:06:02,051 | INFO     | 
[2025-10-22 02:06:54] 2025-10-22 00:06:02,051 | INFO     | architecture information:
[2025-10-22 02:06:54] 2025-10-22 00:06:02,051 | INFO     | executing command: cat /etc/os-release
[2025-10-22 02:06:54] 2025-10-22 00:06:02,059 | INFO     | cat /etc/os-release:
[2025-10-22 02:06:54] NAME="CentOS Linux"
[2025-10-22 02:06:54] VERSION="7 (Core)"
[2025-10-22 02:06:54] ID="centos"
[2025-10-22 02:06:54] ID_LIKE="rhel fedora"
[2025-10-22 02:06:54] VERSION_ID="7"
[2025-10-22 02:06:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-22 02:06:54] ANSI_COLOR="0;31"
[2025-10-22 02:06:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-22 02:06:54] HOME_URL="https://www.centos.org/"
[2025-10-22 02:06:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-22 02:06:54] 
[2025-10-22 02:06:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-22 02:06:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-22 02:06:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-22 02:06:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-22 02:06:54] 
[2025-10-22 02:06:54] 2025-10-22 00:06:02,060 | INFO     | ***************************************
[2025-10-22 02:06:54] 2025-10-22 00:06:02,563 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-22 02:06:54] 2025-10-22 00:06:02,576 | INFO     | sufficient remaining disk space (339972456448 B)
[2025-10-22 02:06:54] 2025-10-22 00:06:02,576 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-22 02:06:54] 2025-10-22 00:06:02,576 | INFO     | current server update state: UPDATING_FINAL
[2025-10-22 02:06:54] 2025-10-22 00:06:02,576 | INFO     | update_server=False
[2025-10-22 02:06:54] 2025-10-22 00:06:02,576 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-22 02:06:54] 2025-10-22 00:06:02,576 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-22 02:06:54] 2025-10-22 00:06:02,576 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-22 02:06:54] 2025-10-22 00:06:02,576 | INFO     | aborting loop
[2025-10-22 02:06:54] 2025-10-22 00:06:02,899 | INFO     | all data control threads have been joined
[2025-10-22 02:06:54] 2025-10-22 00:06:02,902 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-22 02:06:54] 2025-10-22 00:06:03,490 | INFO     | all job control threads have been joined
[2025-10-22 02:06:54] 2025-10-22 00:06:03,491 | INFO     | all payload control threads have been joined
[2025-10-22 02:06:54] 2025-10-22 00:06:03,582 | INFO     | [job] retrieve thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:03,582 | INFO     | [job] queue monitor thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:03,583 | INFO     | [job] job monitor thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:03,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-22 02:06:54] 2025-10-22 00:06:03,804 | INFO     | [payload] failed_post thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:03,905 | INFO     | [data] control thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,047 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,300 | INFO     | [job] validate thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,448 | INFO     | [payload] validate_post thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,490 | INFO     | [payload] validate_pre thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,493 | INFO     | [job] control thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,496 | INFO     | [payload] control thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,504 | INFO     | [job] create_data_payload thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,505 | INFO     | [payload] execute_payloads thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,719 | INFO     | [data] copytool_in thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:04,908 | INFO     | [data] copytool_out thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:07,730 | INFO     | [data] queue_monitor thread has finished
[2025-10-22 02:06:54] 2025-10-22 00:06:32,855 | INFO     | PID=3670768 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-22 02:06:54] 2025-10-22 00:06:32,855 | INFO     | found 0 job(s) in 20 queues
[2025-10-22 02:06:54] 2025-10-22 00:06:32,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-22 02:06:54] 2025-10-22 00:06:32,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-22 02:06:54] 2025-10-22 00:06:47,849 | INFO     | [monitor] cgroup control has ended
[2025-10-22 02:06:54] 2025-10-22 00:06:49,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591075243840)>', '<ExcThread(monitor, started 140590803031808)>']
[2025-10-22 02:06:54] 2025-10-22 00:06:49,941 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-22 02:06:54] 2025-10-22 00:06:49,941 | INFO     | [monitor] control thread has ended
[2025-10-22 02:06:54] 2025-10-22 00:06:54,263 | INFO     | all workflow threads have been joined
[2025-10-22 02:06:54] 2025-10-22 00:06:54,264 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-22 02:06:54] 2025-10-22 00:06:54,264 | INFO     | traces error code: 0
[2025-10-22 02:06:54] 2025-10-22 00:06:54,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-22 02:06:54] 2025-10-22 00:06:54,308 [wrapper] ==== pilot stdout END ====
[2025-10-22 02:06:54] 2025-10-22 00:06:54,310 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-22 02:06:54] 2025-10-22 00:06:54,312 [wrapper] pilotpid: 3670768
[2025-10-22 02:06:54] 2025-10-22 00:06:54,315 [wrapper] Pilot exit status: 0
[2025-10-22 02:06:54] 2025-10-22 00:06:54,321 [wrapper] pandaids: 6853515248
[2025-10-22 02:06:54] 2025-10-22 00:06:54,336 [wrapper] cleanup supervisor_pilot 3689046 3670769
[2025-10-22 02:06:54] 2025-10-22 00:06:54,338 [wrapper] Test setup, not cleaning
[2025-10-22 02:06:54] 2025-10-22 00:06:54,340 [wrapper] apfmon messages muted
[2025-10-22 02:06:54] 2025-10-22 00:06:54,342 [wrapper] ==== wrapper stdout END ====
[2025-10-22 02:06:54] 2025-10-22 00:06:54,344 [wrapper] ==== wrapper stderr END ====
[2025-10-22 02:06:54]  *** Error codes and diagnostics ***
[2025-10-22 02:06:54]     "exeErrorCode": 0,
[2025-10-22 02:06:54]     "exeErrorDiag": "",
[2025-10-22 02:06:54]     "pilotErrorCode": 0,
[2025-10-22 02:06:54]     "pilotErrorDiag": "",
[2025-10-22 02:06:54]  *** Listing of results directory ***
[2025-10-22 02:06:54] total 333812
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc    557409 Oct 21 09:19 pilot3.tar.gz
[2025-10-22 02:06:54] -rwx------ 1 boinc boinc     36292 Oct 21 09:30 runpilot2-wrapper.sh
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc      5112 Oct 21 09:30 queuedata.json
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc       100 Oct 22 00:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-22 02:06:54] -rwxr-xr-x 1 boinc boinc      7986 Oct 22 00:28 run_atlas
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc       105 Oct 22 00:28 job.xml
[2025-10-22 02:06:54] -rw-r--r-- 2 boinc boinc 188181759 Oct 22 00:28 EVNT.46809186._000209.pool.root.1
[2025-10-22 02:06:54] drwxrwx--x 2 boinc boinc      4096 Oct 22 00:28 shared
[2025-10-22 02:06:54] -rw-r--r-- 2 boinc boinc    569667 Oct 22 00:28 input.tar.gz
[2025-10-22 02:06:54] -rw-r--r-- 2 boinc boinc     15120 Oct 22 00:28 start_atlas.sh
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc         0 Oct 22 00:28 boinc_setup_complete
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc      6206 Oct 22 00:28 init_data.xml
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc         0 Oct 22 00:28 boinc_lockfile
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc      2492 Oct 22 00:28 pandaJob.out
[2025-10-22 02:06:54] -rw------- 1 boinc boinc    978456 Oct 22 00:28 agis_schedconf.cvmfs.json
[2025-10-22 02:06:54] -rw------- 1 boinc boinc   1560740 Oct 22 00:28 agis_ddmendpoints.agis.ALL.json
[2025-10-22 02:06:54] drwx------ 5 boinc boinc      4096 Oct 22 00:28 pilot3
[2025-10-22 02:06:54] -rw------- 1 boinc boinc 147567183 Oct 22 02:05 HITS.46809188._005410.pool.root.1
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc       529 Oct 22 02:05 boinc_task_state.xml
[2025-10-22 02:06:54] -rw------- 1 boinc boinc      1016 Oct 22 02:05 memory_monitor_summary.json
[2025-10-22 02:06:54] -rw------- 1 boinc boinc    239232 Oct 22 02:05 log.46809188._005410.job.log.tgz.1
[2025-10-22 02:06:54] -rw------- 1 boinc boinc      7769 Oct 22 02:06 heartbeat.json
[2025-10-22 02:06:54] -rw------- 1 boinc boinc        95 Oct 22 02:06 pilot_heartbeat.json
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc        27 Oct 22 02:06 wrapper_checkpoint.txt
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc      8192 Oct 22 02:06 boinc_mmap_file
[2025-10-22 02:06:54] -rw------- 1 boinc boinc      4752 Oct 22 02:06 pilotlog.txt
[2025-10-22 02:06:54] -rw------- 1 boinc boinc    850667 Oct 22 02:06 log.46809188._005410.job.log.1
[2025-10-22 02:06:54] -rw------- 1 boinc boinc       357 Oct 22 02:06 output.list
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc       620 Oct 22 02:06 runtime_log
[2025-10-22 02:06:54] -rw------- 1 boinc boinc   1105920 Oct 22 02:06 result.tar.gz
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc      8792 Oct 22 02:06 runtime_log.err
[2025-10-22 02:06:54] -rw------- 1 boinc boinc       661 Oct 22 02:06 YVcLDmo0LV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkr1NDmzhvKZm.diag
[2025-10-22 02:06:54] -rw-r--r-- 1 boinc boinc     12350 Oct 22 02:06 stderr.txt
[2025-10-22 02:06:54] HITS file was successfully produced:
[2025-10-22 02:06:54] -rw------- 1 boinc boinc 147567183 Oct 22 02:05 shared/HITS.pool.root.1
[2025-10-22 02:06:54]  *** Contents of shared directory: ***
[2025-10-22 02:06:54] total 329548
[2025-10-22 02:06:54] -rw-r--r-- 2 boinc boinc 188181759 Oct 22 00:28 ATLAS.root_0
[2025-10-22 02:06:54] -rw-r--r-- 2 boinc boinc    569667 Oct 22 00:28 input.tar.gz
[2025-10-22 02:06:54] -rw-r--r-- 2 boinc boinc     15120 Oct 22 00:28 start_atlas.sh
[2025-10-22 02:06:54] -rw------- 1 boinc boinc 147567183 Oct 22 02:05 HITS.pool.root.1
[2025-10-22 02:06:54] -rw------- 1 boinc boinc   1105920 Oct 22 02:06 result.tar.gz
02:06:55 (3667058): run_atlas exited; CPU time 11282.085947
02:06:55 (3667058): called boinc_finish(0)

</stderr_txt>
]]>

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