Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:12:25 (3742638): wrapper (7.7.26015): starting
07:12:25 (3742638): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 07:12:25] Arguments: --nthreads 8
[2025-10-21 07:12:25] Threads: 8
[2025-10-21 07:12:25] Checking for CVMFS
[2025-10-21 07:12:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 07:12:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 07:12:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 07:12:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 07:12:25] 2.13.2.0 1652498 136702 172468 151956 1 335 33652308 40960000 25055 16776704 0 390599250 99.746 265534877 35702 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-21 07:12:25] CVMFS is ok
[2025-10-21 07:12:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 07:12:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 07:12:25] Further information can be found at the LHC@home message board.
[2025-10-21 07:12:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 07:12:25] Checking for apptainer binary...
[2025-10-21 07:12:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 07:12:25] Running /usr/bin/apptainer --version
[2025-10-21 07:12:25] apptainer version 1.4.3-1.el9
[2025-10-21 07:12:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 07:12:25] c-212-18.aglt2.org
[2025-10-21 07:12:25] apptainer works
[2025-10-21 07:12:25] Set ATHENA_PROC_NUMBER=8
[2025-10-21 07:12:25] Set ATHENA_CORE_NUMBER=8
[2025-10-21 07:12:25] Starting ATLAS job with PandaID=6852988590
[2025-10-21 07:12:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 08:50:02]  *** The last 200 lines of the pilot log: ***
[2025-10-21 08:50:02] 2025-10-21 12:49:14,201 | INFO     | monitor loop #396: job 0:6852988590 is in state 'stageout'
[2025-10-21 08:50:02] 2025-10-21 12:49:14,201 | WARNING  | aborting job monitor tasks since payload process 3763574 is not running
[2025-10-21 08:50:02] 2025-10-21 12:49:14,213 | INFO     | time since job start (5794s) is within the limit (172800.0s)
[2025-10-21 08:50:02] 2025-10-21 12:49:14,275 | INFO     | transferring file log.46771637._062745.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6852988590/log.46771637._062745.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-21 08:50:02] 2025-10-21 12:49:14,276 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6852988590/log.46771637._062745.job.log.tgz.1 /tmp/boinchome/slots/5/log.46771637._062745.job
[2025-10-21 08:50:02] 2025-10-21 12:49:14,309 | INFO     | adding to output.list: log.46771637._062745.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/42/4a/log.46771637._062745.job.log.tg
[2025-10-21 08:50:02] 2025-10-21 12:49:14,310 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-21 08:50:02] 2025-10-21 12:49:14,310 | INFO     | summary of transferred files:
[2025-10-21 08:50:02] 2025-10-21 12:49:14,310 | INFO     |  -- lfn=log.46771637._062745.job.log.tgz.1, status_code=0, status=transferred
[2025-10-21 08:50:02] 2025-10-21 12:49:14,310 | INFO     | stage-out finished correctly
[2025-10-21 08:50:02] 2025-10-21 12:49:16,220 | INFO     | time since job start (5796s) is within the limit (172800.0s)
[2025-10-21 08:50:02] 2025-10-21 12:49:16,520 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-21 08:50:02] 2025-10-21 12:49:16,706 | INFO     | monitor loop #397: job 0:6852988590 is in state 'finished'
[2025-10-21 08:50:02] 2025-10-21 12:49:16,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 08:50:02] 2025-10-21 12:49:17,331 | INFO     | job 6852988590 has state=finished
[2025-10-21 08:50:02] 2025-10-21 12:49:17,331 | INFO     | preparing for final server update for job 6852988590 in state='finished'
[2025-10-21 08:50:02] 2025-10-21 12:49:17,332 | INFO     | this job has now completed (state=finished)
[2025-10-21 08:50:02] 2025-10-21 12:49:17,332 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-21 08:50:02] 2025-10-21 12:49:17,332 | INFO     | log transfer has been attempted: DONE
[2025-10-21 08:50:02] 2025-10-21 12:49:17,332 | INFO     | job 6852988590 has finished - writing final server update
[2025-10-21 08:50:02] 2025-10-21 12:49:17,333 | INFO     | total number of processed events: 400 (read)
[2025-10-21 08:50:02] 2025-10-21 12:49:17,351 | INFO     | executing command: lscpu
[2025-10-21 08:50:02] 2025-10-21 12:49:17,463 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-21 08:50:02] 2025-10-21 12:49:18,228 | INFO     | time since job start (5798s) is within the limit (172800.0s)
[2025-10-21 08:50:02] 2025-10-21 12:49:19,210 | INFO     | monitor loop #398: job 0:6852988590 is in state 'finished'
[2025-10-21 08:50:02] 2025-10-21 12:49:19,210 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 08:50:02] 2025-10-21 12:49:20,252 | INFO     | time since job start (5800s) is within the limit (172800.0s)
[2025-10-21 08:50:02] 2025-10-21 12:49:21,764 | INFO     | monitor loop #399: job 0:6852988590 is in state 'finished'
[2025-10-21 08:50:02] 2025-10-21 12:49:21,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 08:50:02] 2025-10-21 12:49:23,687 | INFO     | PID=3748419 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-21 08:50:02] 2025-10-21 12:49:23,688 | INFO     | .. there are 25 such processes running
[2025-10-21 08:50:02] 2025-10-21 12:49:24,289 | INFO     | monitor loop #400: job 0:6852988590 is in state 'finished'
[2025-10-21 08:50:02] 2025-10-21 12:49:24,289 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 08:50:02] 2025-10-21 12:49:24,693 | INFO     | time since job start (5804s) is within the limit (172800.0s)
[2025-10-21 08:50:02] 2025-10-21 12:49:24,729 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 08:50:02] 2025-10-21 12:49:24,748 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3157.6849895833334
[2025-10-21 08:50:02] 2025-10-21 12:49:24,764 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6852988590/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 08:50:02] 2025-10-21 12:49:24,768 | INFO     | extracted standard info from prmon json
[2025-10-21 08:50:02] 2025-10-21 12:49:24,769 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 08:50:02] 2025-10-21 12:49:24,769 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 08:50:02] 2025-10-21 12:49:24,770 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 08:50:02] 2025-10-21 12:49:24,770 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 08:50:02] 2025-10-21 12:49:24,784 | INFO     | fitting pss+swap vs Time
[2025-10-21 08:50:02] 2025-10-21 12:49:24,784 | INFO     | sum of square deviations: 211294733.59090862
[2025-10-21 08:50:02] 2025-10-21 12:49:24,785 | INFO     | sum of deviations: -284740500.3181815
[2025-10-21 08:50:02] 2025-10-21 12:49:24,785 | INFO     | mean x: 1761048155.5681818
[2025-10-21 08:50:02] 2025-10-21 12:49:24,785 | INFO     | mean y: 2521102.3863636362
[2025-10-21 08:50:02] 2025-10-21 12:49:24,785 | INFO     | -- intersect: 2375707240.909555
[2025-10-21 08:50:02] 2025-10-21 12:49:24,785 | INFO     | intersect: 2375707240.909555
[2025-10-21 08:50:02] 2025-10-21 12:49:24,785 | INFO     | chi2: 0.006348642821091799
[2025-10-21 08:50:02] 2025-10-21 12:49:24,785 | INFO     | -- intersect: 2375707240.909555
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | current memory leak: -1.35 B/s (using 88 data points, chi2=0.01)
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | could have reported an average CPU frequency of 3149 MHz (7 samples)
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | ..............................
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | . Timing measurements:
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | . get job = 0 s
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | . initial setup = 2 s
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | . payload setup = 9 s
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | . stage-in = 0 s
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | . payload execution = 5758 s
[2025-10-21 08:50:02] 2025-10-21 12:49:24,786 | INFO     | . stage-out = 3 s
[2025-10-21 08:50:02] 2025-10-21 12:49:24,787 | INFO     | . log creation = 0 s
[2025-10-21 08:50:02] 2025-10-21 12:49:24,787 | INFO     | ..............................
[2025-10-21 08:50:02] 2025-10-21 12:49:25,013 | INFO     | 
[2025-10-21 08:50:02] 2025-10-21 12:49:25,015 | INFO     | job summary report
[2025-10-21 08:50:02] 2025-10-21 12:49:25,015 | INFO     | --------------------------------------------------
[2025-10-21 08:50:02] 2025-10-21 12:49:25,015 | INFO     | PanDA job id: 6852988590
[2025-10-21 08:50:02] 2025-10-21 12:49:25,015 | INFO     | task id: 46771637
[2025-10-21 08:50:02] 2025-10-21 12:49:25,015 | INFO     | errors: (none)
[2025-10-21 08:50:02] 2025-10-21 12:49:25,015 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 08:50:02] 2025-10-21 12:49:25,015 | INFO     | pilot state: finished 
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | transexitcode: 0
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | exeerrorcode: 0
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | exeerrordiag: 
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | exitcode: 0
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | exitmsg: OK
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | cpuconsumptiontime: 34725 s
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | nevents: 400
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | neventsw: 0
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | pid: 3763574
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | pgrp: 3763574
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | corecount: 8
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | event service: False
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | sizes: {0: 2348931, 1: 2348959, 8: 2349221, 11: 2349249, 5772: 2375965, 5776: 2384963, 5778: 2385147, 5786: 2385341}
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | --------------------------------------------------
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | 
[2025-10-21 08:50:02] 2025-10-21 12:49:25,016 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-21 08:50:02] 2025-10-21 12:49:25,082 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,084 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,084 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 08:50:02] 2025-10-21 12:49:25,105 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,105 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 08:50:02] 2025-10-21 12:49:25,105 | INFO     | job 6852988590 has completed (purged errors)
[2025-10-21 08:50:02] 2025-10-21 12:49:25,106 | INFO     | overall cleanup function is called
[2025-10-21 08:50:02] 2025-10-21 12:49:26,160 | INFO     | --- collectZombieJob: --- 10, [3763574]
[2025-10-21 08:50:02] 2025-10-21 12:49:26,160 | INFO     | zombie collector waiting for pid 3763574
[2025-10-21 08:50:02] 2025-10-21 12:49:26,160 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 08:50:02] 2025-10-21 12:49:26,160 | INFO     | collected zombie processes
[2025-10-21 08:50:02] 2025-10-21 12:49:26,160 | INFO     | will attempt to kill all subprocesses of pid=3763574
[2025-10-21 08:50:02] 2025-10-21 12:49:28,115 | INFO     | process IDs to be killed: [3763574] (in reverse order)
[2025-10-21 08:50:02] 2025-10-21 12:49:28,284 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 08:50:02] 2025-10-21 12:49:28,284 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 08:50:02] 2025-10-21 12:49:28,362 | INFO     | did not find any defunct processes belonging to 3763574
[2025-10-21 08:50:02] 2025-10-21 12:49:28,481 | INFO     | did not find any defunct processes belonging to 3763574
[2025-10-21 08:50:02] 2025-10-21 12:49:28,481 | INFO     | ready for new job
[2025-10-21 08:50:02] 2025-10-21 12:49:28,481 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 08:50:02] 2025-10-21 12:49:28,482 | INFO     | ***************************************
[2025-10-21 08:50:02] 2025-10-21 12:49:28,483 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 08:50:02] 2025-10-21 12:49:28,483 | INFO     | ***************************************
[2025-10-21 08:50:02] 2025-10-21 12:49:28,483 | INFO     | 
[2025-10-21 08:50:02] 2025-10-21 12:49:28,487 | INFO     | architecture information:
[2025-10-21 08:50:02] 2025-10-21 12:49:28,488 | INFO     | executing command: cat /etc/os-release
[2025-10-21 08:50:02] 2025-10-21 12:49:28,588 | INFO     | cat /etc/os-release:
[2025-10-21 08:50:02] NAME="CentOS Linux"
[2025-10-21 08:50:02] VERSION="7 (Core)"
[2025-10-21 08:50:02] ID="centos"
[2025-10-21 08:50:02] ID_LIKE="rhel fedora"
[2025-10-21 08:50:02] VERSION_ID="7"
[2025-10-21 08:50:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 08:50:02] ANSI_COLOR="0;31"
[2025-10-21 08:50:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 08:50:02] HOME_URL="https://www.centos.org/"
[2025-10-21 08:50:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 08:50:02] 
[2025-10-21 08:50:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 08:50:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 08:50:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 08:50:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 08:50:02] 
[2025-10-21 08:50:02] 2025-10-21 12:49:28,589 | INFO     | ***************************************
[2025-10-21 08:50:02] 2025-10-21 12:49:29,093 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-21 08:50:02] 2025-10-21 12:49:29,151 | INFO     | sufficient remaining disk space (126635474944 B)
[2025-10-21 08:50:02] 2025-10-21 12:49:29,152 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 08:50:02] 2025-10-21 12:49:29,152 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 08:50:02] 2025-10-21 12:49:29,152 | INFO     | update_server=False
[2025-10-21 08:50:02] 2025-10-21 12:49:29,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 08:50:02] 2025-10-21 12:49:29,245 | INFO     | all data control threads have been joined
[2025-10-21 08:50:02] 2025-10-21 12:49:29,452 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-21 08:50:02] 2025-10-21 12:49:29,452 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-21 08:50:02] 2025-10-21 12:49:29,453 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 08:50:02] 2025-10-21 12:49:29,453 | INFO     | will abort loop
[2025-10-21 08:50:02] 2025-10-21 12:49:29,750 | INFO     | all payload control threads have been joined
[2025-10-21 08:50:02] 2025-10-21 12:49:30,052 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 08:50:02] 2025-10-21 12:49:30,158 | INFO     | [job] retrieve thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,163 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 08:50:02] 2025-10-21 12:49:30,223 | INFO     | [payload] validate_post thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,251 | INFO     | [data] control thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,459 | INFO     | [job] job monitor thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,485 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,486 | INFO     | [job] validate thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,492 | INFO     | [data] copytool_in thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,777 | INFO     | [payload] control thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:30,848 | INFO     | all job control threads have been joined
[2025-10-21 08:50:02] 2025-10-21 12:49:31,058 | INFO     | [job] queue monitor thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:31,085 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:31,150 | INFO     | [payload] failed_post thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:31,467 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:31,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 08:50:02] 2025-10-21 12:49:31,854 | INFO     | [job] control thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:32,178 | INFO     | [data] copytool_out thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:35,735 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 08:50:02] 2025-10-21 12:49:50,335 | INFO     | [monitor] cgroup control has ended
[2025-10-21 08:50:02] 2025-10-21 12:49:51,996 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618409686848)>', '<ExcThread(monitor, started 140617556420352)>']
[2025-10-21 08:50:02] 2025-10-21 12:49:57,027 | INFO     | all workflow threads have been joined
[2025-10-21 08:50:02] 2025-10-21 12:49:57,027 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 08:50:02] 2025-10-21 12:49:57,027 | INFO     | traces error code: 0
[2025-10-21 08:50:02] 2025-10-21 12:49:57,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 08:50:02] 2025-10-21 12:50:01,334 | INFO     | PID=3748419 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-21 08:50:02] 2025-10-21 12:50:01,335 | INFO     | .. there are 25 such processes running
[2025-10-21 08:50:02] 2025-10-21 12:50:01,335 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 08:50:02] 2025-10-21 12:50:01,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 08:50:02] 2025-10-21 12:50:01,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 08:50:02] 2025-10-21 12:50:01,335 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 08:50:02] 2025-10-21 12:50:01,335 | INFO     | [monitor] control thread has ended
[2025-10-21 08:50:02] 2025-10-21 12:50:02,158 [wrapper] ==== pilot stdout END ====
[2025-10-21 08:50:02] 2025-10-21 12:50:02,172 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 08:50:02] 2025-10-21 12:50:02,189 [wrapper] pilotpid: 3748419
[2025-10-21 08:50:02] 2025-10-21 12:50:02,216 [wrapper] Pilot exit status: 0
[2025-10-21 08:50:02] 2025-10-21 12:50:02,316 [wrapper] pandaids: 6852988590
[2025-10-21 08:50:02] 2025-10-21 12:50:02,718 [wrapper] cleanup supervisor_pilot 4065287 3748421
[2025-10-21 08:50:02] 2025-10-21 12:50:02,721 [wrapper] Test setup, not cleaning
[2025-10-21 08:50:02] 2025-10-21 12:50:02,723 [wrapper] apfmon messages muted
[2025-10-21 08:50:02] 2025-10-21 12:50:02,726 [wrapper] ==== wrapper stdout END ====
[2025-10-21 08:50:02] 2025-10-21 12:50:02,729 [wrapper] ==== wrapper stderr END ====
[2025-10-21 08:50:02]  *** Error codes and diagnostics ***
[2025-10-21 08:50:02]     "exeErrorCode": 0,
[2025-10-21 08:50:02]     "exeErrorDiag": "",
[2025-10-21 08:50:02]     "pilotErrorCode": 0,
[2025-10-21 08:50:02]     "pilotErrorDiag": "",
[2025-10-21 08:50:02]  *** Listing of results directory ***
[2025-10-21 08:50:02] total 430800
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas    557409 Oct 21 02:00 pilot3.tar.gz
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas      5112 Oct 21 02:08 queuedata.json
[2025-10-21 08:50:02] -rwx------. 1 boincer umatlas     36292 Oct 21 02:09 runpilot2-wrapper.sh
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas       100 Oct 21 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 08:50:02] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 21 07:12 run_atlas
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas       105 Oct 21 07:12 job.xml
[2025-10-21 08:50:02] -rw-r--r--. 2 boincer umatlas 228623470 Oct 21 07:12 EVNT.46771634._002476.pool.root.1
[2025-10-21 08:50:02] -rw-r--r--. 2 boincer umatlas     15120 Oct 21 07:12 start_atlas.sh
[2025-10-21 08:50:02] drwxrwx--x. 2 boincer umatlas      4096 Oct 21 07:12 shared
[2025-10-21 08:50:02] -rw-r--r--. 2 boincer umatlas    569675 Oct 21 07:12 input.tar.gz
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas         0 Oct 21 07:12 boinc_lockfile
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas      2560 Oct 21 07:12 pandaJob.out
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas    978846 Oct 21 07:12 agis_schedconf.cvmfs.json
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas   1560740 Oct 21 07:12 agis_ddmendpoints.agis.ALL.json
[2025-10-21 08:50:02] drwx------. 5 boincer umatlas      4096 Oct 21 07:12 pilot3
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas 206313467 Oct 21 08:48 HITS.46771637._062745.pool.root.1
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas       530 Oct 21 08:48 boinc_task_state.xml
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas      1045 Oct 21 08:49 memory_monitor_summary.json
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas        95 Oct 21 08:49 pilot_heartbeat.json
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas    337947 Oct 21 08:49 log.46771637._062745.job.log.tgz.1
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas      7785 Oct 21 08:49 heartbeat.json
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas      6947 Oct 21 08:49 init_data.xml
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas      8192 Oct 21 08:50 boinc_mmap_file
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas        27 Oct 21 08:50 wrapper_checkpoint.txt
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas       823 Oct 21 08:50 pilotlog.txt
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas    812206 Oct 21 08:50 log.46771637._062745.job.log.1
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas       357 Oct 21 08:50 output.list
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas       620 Oct 21 08:50 runtime_log
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas   1167360 Oct 21 08:50 result.tar.gz
[2025-10-21 08:50:02] -rw-------. 1 boincer umatlas       655 Oct 21 08:50 UIiNDmojKV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJe1NDm3I8Sdn.diag
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas      8703 Oct 21 08:50 runtime_log.err
[2025-10-21 08:50:02] -rw-r--r--. 1 boincer umatlas     22567 Oct 21 08:50 stderr.txt
[2025-10-21 08:50:02] HITS file was successfully produced:
[2025-10-21 08:50:03] -rw-------. 1 boincer umatlas 206313467 Oct 21 08:48 shared/HITS.pool.root.1
[2025-10-21 08:50:03]  *** Contents of shared directory: ***
[2025-10-21 08:50:03] total 426472
[2025-10-21 08:50:03] -rw-r--r--. 2 boincer umatlas 228623470 Oct 21 07:12 ATLAS.root_0
[2025-10-21 08:50:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 21 07:12 start_atlas.sh
[2025-10-21 08:50:03] -rw-r--r--. 2 boincer umatlas    569675 Oct 21 07:12 input.tar.gz
[2025-10-21 08:50:03] -rw-------. 1 boincer umatlas 206313467 Oct 21 08:48 HITS.pool.root.1
[2025-10-21 08:50:03] -rw-------. 1 boincer umatlas   1167360 Oct 21 08:50 result.tar.gz
08:50:04 (3742638): run_atlas exited; CPU time 34881.830341
08:50:04 (3742638): called boinc_finish(0)

</stderr_txt>
]]>

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