Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:30:56 (285248): wrapper (7.7.26015): starting
20:30:56 (285248): wrapper: running run_atlas (--nthreads 3)
[2025-10-21 20:30:56] Arguments: --nthreads 3
[2025-10-21 20:30:56] Threads: 3
[2025-10-21 20:30:56] Checking for CVMFS
[2025-10-21 20:30:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 20:30:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 20:30:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 20:30:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 20:30:56] 2.9.2.0 4130834 1146 75692 151968 0 57 31978863 36864000 0 130560 0 924059 99.988 44472 2003 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 20:30:56] CVMFS is ok
[2025-10-21 20:30:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 20:30:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 20:30:56] Further information can be found at the LHC@home message board.
[2025-10-21 20:30:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 20:30:56] Checking for apptainer binary...
[2025-10-21 20:30:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 20:30:56] Running /usr/bin/apptainer --version
[2025-10-21 20:30:56] apptainer version 1.4.1-1.1
[2025-10-21 20:30:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 20:30:56] magicA161a
[2025-10-21 20:30:56] apptainer works
[2025-10-21 20:30:56] Set ATHENA_PROC_NUMBER=3
[2025-10-21 20:30:56] Set ATHENA_CORE_NUMBER=3
[2025-10-21 20:30:56] Starting ATLAS job with PandaID=6852988130
[2025-10-21 20:30:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 21:54:15]  *** The last 200 lines of the pilot log: ***
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 21:54:15] 2025-10-21 19:53:43,075 | INFO     | job 6852988130 has completed (purged errors)
[2025-10-21 21:54:15] 2025-10-21 19:53:43,076 | INFO     | overall cleanup function is called
[2025-10-21 21:54:15] 2025-10-21 19:53:44,082 | INFO     | --- collectZombieJob: --- 10, [295395]
[2025-10-21 21:54:15] 2025-10-21 19:53:44,082 | INFO     | zombie collector waiting for pid 295395
[2025-10-21 21:54:15] 2025-10-21 19:53:44,082 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 21:54:15] 2025-10-21 19:53:44,082 | INFO     | collected zombie processes
[2025-10-21 21:54:15] 2025-10-21 19:53:44,082 | INFO     | will attempt to kill all subprocesses of pid=295395
[2025-10-21 21:54:15] 2025-10-21 19:53:44,125 | INFO     | process IDs to be killed: [295395] (in reverse order)
[2025-10-21 21:54:15] 2025-10-21 19:53:44,148 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 21:54:15] 2025-10-21 19:53:44,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 21:54:15] 2025-10-21 19:53:44,150 | INFO     | did not find any defunct processes belonging to 295395
[2025-10-21 21:54:15] 2025-10-21 19:53:44,151 | INFO     | did not find any defunct processes belonging to 295395
[2025-10-21 21:54:15] 2025-10-21 19:53:44,151 | INFO     | ready for new job
[2025-10-21 21:54:15] 2025-10-21 19:53:44,151 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 21:54:15] 2025-10-21 19:53:44,152 | INFO     | ***************************************
[2025-10-21 21:54:15] 2025-10-21 19:53:44,152 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 21:54:15] 2025-10-21 19:53:44,152 | INFO     | ***************************************
[2025-10-21 21:54:15] 2025-10-21 19:53:44,152 | INFO     | 
[2025-10-21 21:54:15] 2025-10-21 19:53:44,152 | INFO     | architecture information:
[2025-10-21 21:54:15] 2025-10-21 19:53:44,152 | INFO     | executing command: cat /etc/os-release
[2025-10-21 21:54:15] 2025-10-21 19:53:44,160 | INFO     | cat /etc/os-release:
[2025-10-21 21:54:15] NAME="CentOS Linux"
[2025-10-21 21:54:15] VERSION="7 (Core)"
[2025-10-21 21:54:15] ID="centos"
[2025-10-21 21:54:15] ID_LIKE="rhel fedora"
[2025-10-21 21:54:15] VERSION_ID="7"
[2025-10-21 21:54:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 21:54:15] ANSI_COLOR="0;31"
[2025-10-21 21:54:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 21:54:15] HOME_URL="https://www.centos.org/"
[2025-10-21 21:54:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 21:54:15] 
[2025-10-21 21:54:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 21:54:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 21:54:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 21:54:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 21:54:15] 
[2025-10-21 21:54:15] 2025-10-21 19:53:44,161 | INFO     | ***************************************
[2025-10-21 21:54:15] 2025-10-21 19:53:44,664 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-21 21:54:15] 2025-10-21 19:53:44,677 | INFO     | sufficient remaining disk space (372578975744 B)
[2025-10-21 21:54:15] 2025-10-21 19:53:44,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 21:54:15] 2025-10-21 19:53:44,677 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 21:54:15] 2025-10-21 19:53:44,677 | INFO     | update_server=False
[2025-10-21 21:54:15] 2025-10-21 19:53:44,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 21:54:15] 2025-10-21 19:53:44,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 21:54:15] 2025-10-21 19:53:44,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 21:54:15] 2025-10-21 19:53:44,677 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 21:54:15] 2025-10-21 19:53:44,678 | INFO     | aborting loop
[2025-10-21 21:54:15] 2025-10-21 19:53:44,719 | INFO     | all data control threads have been joined
[2025-10-21 21:54:15] 2025-10-21 19:53:44,844 | INFO     | all job control threads have been joined
[2025-10-21 21:54:15] 2025-10-21 19:53:45,678 | INFO     | [job] retrieve thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:45,683 | INFO     | [job] queue monitor thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:45,683 | INFO     | [job] job monitor thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:45,725 | INFO     | [data] control thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:45,775 | INFO     | all payload control threads have been joined
[2025-10-21 21:54:15] 2025-10-21 19:53:45,850 | INFO     | [job] control thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:45,902 | INFO     | [data] copytool_in thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:45,971 | INFO     | [payload] failed_post thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:46,199 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:46,466 | INFO     | [job] validate thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:46,481 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:46,519 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:46,684 | INFO     | [data] copytool_out thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:46,781 | INFO     | [payload] control thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:46,830 | INFO     | [payload] validate_post thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:48,036 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 21:54:15] 2025-10-21 19:53:52,044 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:53:55,560 | INFO     | job.realtimelogging is not enabled
[2025-10-21 21:54:15] 2025-10-21 19:53:56,566 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 21:54:15] 2025-10-21 19:54:07,607 | INFO     | [monitor] cgroup control has ended
[2025-10-21 21:54:15] 2025-10-21 19:54:08,215 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140380815112000)>', '<ExcThread(monitor, started 140380192368384)>']
[2025-10-21 21:54:15] 2025-10-21 19:54:13,241 | INFO     | all workflow threads have been joined
[2025-10-21 21:54:15] 2025-10-21 19:54:13,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 21:54:15] 2025-10-21 19:54:13,241 | INFO     | traces error code: 0
[2025-10-21 21:54:15] 2025-10-21 19:54:13,241 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 21:54:15] 2025-10-21 19:54:15,760 | INFO     | PID=288965 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-21 21:54:15] 2025-10-21 19:54:15,760 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 21:54:15] 2025-10-21 19:54:15,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 21:54:15] 2025-10-21 19:54:15,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 21:54:15] 2025-10-21 19:54:15,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 21:54:15] 2025-10-21 19:54:15,760 | INFO     | [monitor] control thread has ended
[2025-10-21 21:54:15] 2025-10-21 19:54:15,805 [wrapper] ==== pilot stdout END ====
[2025-10-21 21:54:15] 2025-10-21 19:54:15,808 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 21:54:15] 2025-10-21 19:54:15,810 [wrapper] pilotpid: 288965
[2025-10-21 21:54:15] 2025-10-21 19:54:15,812 [wrapper] Pilot exit status: 0
[2025-10-21 21:54:15] 2025-10-21 19:54:15,819 [wrapper] pandaids: 6852988130
[2025-10-21 21:54:15] 2025-10-21 19:54:15,835 [wrapper] cleanup supervisor_pilot  307283 288966
[2025-10-21 21:54:15] 2025-10-21 19:54:15,837 [wrapper] Test setup, not cleaning
[2025-10-21 21:54:15] 2025-10-21 19:54:15,840 [wrapper] apfmon messages muted
[2025-10-21 21:54:15] 2025-10-21 19:54:15,842 [wrapper] ==== wrapper stdout END ====
[2025-10-21 21:54:15] 2025-10-21 19:54:15,844 [wrapper] ==== wrapper stderr END ====
[2025-10-21 21:54:15]  *** Error codes and diagnostics ***
[2025-10-21 21:54:15]     "exeErrorCode": 0,
[2025-10-21 21:54:15]     "exeErrorDiag": "",
[2025-10-21 21:54:15]     "pilotErrorCode": 0,
[2025-10-21 21:54:15]     "pilotErrorDiag": "",
[2025-10-21 21:54:15]  *** Listing of results directory ***
[2025-10-21 21:54:15] total 429540
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc    557409 Oct 21 06:55 pilot3.tar.gz
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc      5112 Oct 21 07:42 queuedata.json
[2025-10-21 21:54:15] -rwx------ 1 boinc boinc     36292 Oct 21 07:43 runpilot2-wrapper.sh
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc       100 Oct 21 20:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 21:54:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 20:30 run_atlas
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc       105 Oct 21 20:30 job.xml
[2025-10-21 21:54:15] -rw-r--r-- 2 boinc boinc 231863710 Oct 21 20:30 EVNT.46771634._002465.pool.root.1
[2025-10-21 21:54:15] -rw-r--r-- 2 boinc boinc    569674 Oct 21 20:30 input.tar.gz
[2025-10-21 21:54:15] -rw-r--r-- 2 boinc boinc     15120 Oct 21 20:30 start_atlas.sh
[2025-10-21 21:54:15] drwxrwx--x 2 boinc boinc      4096 Oct 21 20:30 shared
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc         0 Oct 21 20:30 boinc_setup_complete
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc      6448 Oct 21 20:30 init_data.xml
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc         0 Oct 21 20:30 boinc_lockfile
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc      2560 Oct 21 20:30 pandaJob.out
[2025-10-21 21:54:15] -rw------- 1 boinc boinc    978456 Oct 21 20:31 agis_schedconf.cvmfs.json
[2025-10-21 21:54:15] -rw------- 1 boinc boinc   1560740 Oct 21 20:31 agis_ddmendpoints.agis.ALL.json
[2025-10-21 21:54:15] drwx------ 5 boinc boinc      4096 Oct 21 20:31 pilot3
[2025-10-21 21:54:15] -rw------- 1 boinc boinc 202101233 Oct 21 21:53 HITS.46771637._062507.pool.root.1
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc       529 Oct 21 21:53 boinc_task_state.xml
[2025-10-21 21:54:15] -rw------- 1 boinc boinc        95 Oct 21 21:53 pilot_heartbeat.json
[2025-10-21 21:54:15] -rw------- 1 boinc boinc      1015 Oct 21 21:53 memory_monitor_summary.json
[2025-10-21 21:54:15] -rw------- 1 boinc boinc    265176 Oct 21 21:53 log.46771637._062507.job.log.tgz.1
[2025-10-21 21:54:15] -rw------- 1 boinc boinc      7757 Oct 21 21:53 heartbeat.json
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc        27 Oct 21 21:54 wrapper_checkpoint.txt
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc      8192 Oct 21 21:54 boinc_mmap_file
[2025-10-21 21:54:15] -rw------- 1 boinc boinc       746 Oct 21 21:54 pilotlog.txt
[2025-10-21 21:54:15] -rw------- 1 boinc boinc    727341 Oct 21 21:54 log.46771637._062507.job.log.1
[2025-10-21 21:54:15] -rw------- 1 boinc boinc       357 Oct 21 21:54 output.list
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc       620 Oct 21 21:54 runtime_log
[2025-10-21 21:54:15] -rw------- 1 boinc boinc   1013760 Oct 21 21:54 result.tar.gz
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc      8797 Oct 21 21:54 runtime_log.err
[2025-10-21 21:54:15] -rw------- 1 boinc boinc       662 Oct 21 21:54 cZELDmwKKV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmfa1NDmD6dmFo.diag
[2025-10-21 21:54:15] -rw-r--r-- 1 boinc boinc     12825 Oct 21 21:54 stderr.txt
[2025-10-21 21:54:15] HITS file was successfully produced:
[2025-10-21 21:54:15] -rw------- 1 boinc boinc 202101233 Oct 21 21:53 shared/HITS.pool.root.1
[2025-10-21 21:54:15]  *** Contents of shared directory: ***
[2025-10-21 21:54:15] total 425376
[2025-10-21 21:54:15] -rw-r--r-- 2 boinc boinc 231863710 Oct 21 20:30 ATLAS.root_0
[2025-10-21 21:54:15] -rw-r--r-- 2 boinc boinc    569674 Oct 21 20:30 input.tar.gz
[2025-10-21 21:54:15] -rw-r--r-- 2 boinc boinc     15120 Oct 21 20:30 start_atlas.sh
[2025-10-21 21:54:15] -rw------- 1 boinc boinc 202101233 Oct 21 21:53 HITS.pool.root.1
[2025-10-21 21:54:15] -rw------- 1 boinc boinc   1013760 Oct 21 21:54 result.tar.gz
21:54:16 (285248): run_atlas exited; CPU time 14162.837791
21:54:16 (285248): called boinc_finish(0)

</stderr_txt>
]]>

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