Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:11:16 (4125540): wrapper (7.7.26015): starting
12:11:16 (4125540): wrapper: running run_atlas (--nthreads 2)
[2025-10-21 12:11:17] Arguments: --nthreads 2
[2025-10-21 12:11:17] Threads: 2
[2025-10-21 12:11:17] Checking for CVMFS
[2025-10-21 12:11:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 12:11:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 12:11:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 12:11:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 12:11:17] 2.9.2.0 4008214 548 53896 151953 0 57 28758517 36864001 0 130560 0 307509 99.983 20069 2176 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 12:11:17] CVMFS is ok
[2025-10-21 12:11:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 12:11:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 12:11:17] Further information can be found at the LHC@home message board.
[2025-10-21 12:11:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 12:11:17] Checking for apptainer binary...
[2025-10-21 12:11:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 12:11:17] Running /usr/bin/apptainer --version
[2025-10-21 12:11:17] apptainer version 1.4.1-1.1
[2025-10-21 12:11:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 12:11:17] madmaxA275
[2025-10-21 12:11:17] apptainer works
[2025-10-21 12:11:17] Set ATHENA_PROC_NUMBER=2
[2025-10-21 12:11:17] Set ATHENA_CORE_NUMBER=2
[2025-10-21 12:11:17] Starting ATLAS job with PandaID=6852961545
[2025-10-21 12:11:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 14:28:00]  *** The last 200 lines of the pilot log: ***
[2025-10-21 14:28:00] 2025-10-21 12:27:27,665 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 14:28:00] 2025-10-21 12:27:27,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 14:28:00] 2025-10-21 12:27:27,665 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 14:28:00] 2025-10-21 12:27:27,665 | INFO     | job 6852961545 has completed (purged errors)
[2025-10-21 14:28:00] 2025-10-21 12:27:27,665 | INFO     | overall cleanup function is called
[2025-10-21 14:28:00] 2025-10-21 12:27:28,670 | INFO     | --- collectZombieJob: --- 10, [4135654]
[2025-10-21 14:28:00] 2025-10-21 12:27:28,672 | INFO     | zombie collector waiting for pid 4135654
[2025-10-21 14:28:00] 2025-10-21 12:27:28,672 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 14:28:00] 2025-10-21 12:27:28,672 | INFO     | collected zombie processes
[2025-10-21 14:28:00] 2025-10-21 12:27:28,672 | INFO     | will attempt to kill all subprocesses of pid=4135654
[2025-10-21 14:28:00] 2025-10-21 12:27:28,707 | INFO     | process IDs to be killed: [4135654] (in reverse order)
[2025-10-21 14:28:00] 2025-10-21 12:27:28,727 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 14:28:00] 2025-10-21 12:27:28,727 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 14:28:00] 2025-10-21 12:27:28,728 | INFO     | did not find any defunct processes belonging to 4135654
[2025-10-21 14:28:00] 2025-10-21 12:27:28,729 | INFO     | did not find any defunct processes belonging to 4135654
[2025-10-21 14:28:00] 2025-10-21 12:27:28,729 | INFO     | ready for new job
[2025-10-21 14:28:00] 2025-10-21 12:27:28,729 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 14:28:00] 2025-10-21 12:27:28,729 | INFO     | ***************************************
[2025-10-21 14:28:00] 2025-10-21 12:27:28,729 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 14:28:00] 2025-10-21 12:27:28,729 | INFO     | ***************************************
[2025-10-21 14:28:00] 2025-10-21 12:27:28,729 | INFO     | 
[2025-10-21 14:28:00] 2025-10-21 12:27:28,730 | INFO     | architecture information:
[2025-10-21 14:28:00] 2025-10-21 12:27:28,730 | INFO     | executing command: cat /etc/os-release
[2025-10-21 14:28:00] 2025-10-21 12:27:28,738 | INFO     | cat /etc/os-release:
[2025-10-21 14:28:00] NAME="CentOS Linux"
[2025-10-21 14:28:00] VERSION="7 (Core)"
[2025-10-21 14:28:00] ID="centos"
[2025-10-21 14:28:00] ID_LIKE="rhel fedora"
[2025-10-21 14:28:00] VERSION_ID="7"
[2025-10-21 14:28:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 14:28:00] ANSI_COLOR="0;31"
[2025-10-21 14:28:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 14:28:00] HOME_URL="https://www.centos.org/"
[2025-10-21 14:28:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 14:28:00] 
[2025-10-21 14:28:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 14:28:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 14:28:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 14:28:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 14:28:00] 
[2025-10-21 14:28:00] 2025-10-21 12:27:28,738 | INFO     | ***************************************
[2025-10-21 14:28:00] 2025-10-21 12:27:29,241 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | INFO     | sufficient remaining disk space (255397462016 B)
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | INFO     | update_server=False
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | INFO     | aborting loop
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 14:28:00] 2025-10-21 12:27:29,254 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 14:28:00] 2025-10-21 12:27:29,375 | INFO     | all payload control threads have been joined
[2025-10-21 14:28:00] 2025-10-21 12:27:30,158 | INFO     | all job control threads have been joined
[2025-10-21 14:28:00] 2025-10-21 12:27:30,239 | INFO     | all data control threads have been joined
[2025-10-21 14:28:00] 2025-10-21 12:27:30,259 | INFO     | [job] retrieve thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:30,260 | INFO     | [job] queue monitor thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:30,261 | INFO     | [job] job monitor thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:30,381 | INFO     | [payload] control thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:30,562 | INFO     | [data] copytool_in thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:30,637 | INFO     | [payload] validate_post thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:30,650 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:30,710 | INFO     | [job] validate thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:30,741 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:31,132 | INFO     | [payload] failed_post thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:31,164 | INFO     | [job] control thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:31,245 | INFO     | [data] control thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:31,260 | INFO     | [data] copytool_out thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:31,314 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:33,261 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:39,873 | INFO     | job.realtimelogging is not enabled
[2025-10-21 14:28:00] 2025-10-21 12:27:40,878 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 14:28:00] 2025-10-21 12:27:42,020 | INFO     | [monitor] cgroup control has ended
[2025-10-21 14:28:00] 2025-10-21 12:27:43,408 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641786730304)>', '<ExcThread(monitor, started 140641279387392)>']
[2025-10-21 14:28:00] 2025-10-21 12:27:48,434 | INFO     | all workflow threads have been joined
[2025-10-21 14:28:00] 2025-10-21 12:27:48,434 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 14:28:00] 2025-10-21 12:27:48,435 | INFO     | traces error code: 0
[2025-10-21 14:28:00] 2025-10-21 12:27:48,435 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 14:28:00] 2025-10-21 12:28:00,102 | INFO     | PID=4129246 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-21 14:28:00] 2025-10-21 12:28:00,103 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 14:28:00] 2025-10-21 12:28:00,103 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 14:28:00] 2025-10-21 12:28:00,103 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 14:28:00] 2025-10-21 12:28:00,103 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 14:28:00] 2025-10-21 12:28:00,103 | INFO     | [monitor] control thread has ended
[2025-10-21 14:28:00] 2025-10-21 12:28:00,141 [wrapper] ==== pilot stdout END ====
[2025-10-21 14:28:00] 2025-10-21 12:28:00,144 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 14:28:00] 2025-10-21 12:28:00,147 [wrapper] pilotpid: 4129246
[2025-10-21 14:28:00] 2025-10-21 12:28:00,149 [wrapper] Pilot exit status: 0
[2025-10-21 14:28:00] 2025-10-21 12:28:00,154 [wrapper] pandaids: 6852961545
[2025-10-21 14:28:00] 2025-10-21 12:28:00,166 [wrapper] cleanup supervisor_pilot 4153093 4129247
[2025-10-21 14:28:00] 2025-10-21 12:28:00,168 [wrapper] Test setup, not cleaning
[2025-10-21 14:28:00] 2025-10-21 12:28:00,170 [wrapper] apfmon messages muted
[2025-10-21 14:28:00] 2025-10-21 12:28:00,172 [wrapper] ==== wrapper stdout END ====
[2025-10-21 14:28:00] 2025-10-21 12:28:00,175 [wrapper] ==== wrapper stderr END ====
[2025-10-21 14:28:00]  *** Error codes and diagnostics ***
[2025-10-21 14:28:00]     "exeErrorCode": 0,
[2025-10-21 14:28:00]     "exeErrorDiag": "",
[2025-10-21 14:28:00]     "pilotErrorCode": 0,
[2025-10-21 14:28:00]     "pilotErrorDiag": "",
[2025-10-21 14:28:00]  *** Listing of results directory ***
[2025-10-21 14:28:00] total 427980
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc    557409 Oct 21 03:53 pilot3.tar.gz
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc      5112 Oct 21 04:37 queuedata.json
[2025-10-21 14:28:00] -rwx------ 1 boinc boinc     36292 Oct 21 04:39 runpilot2-wrapper.sh
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc       100 Oct 21 12:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 14:28:00] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 12:11 run_atlas
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc       105 Oct 21 12:11 job.xml
[2025-10-21 14:28:00] -rw-r--r-- 2 boinc boinc 226264675 Oct 21 12:11 EVNT.46771634._002347.pool.root.1
[2025-10-21 14:28:00] -rw-r--r-- 2 boinc boinc    569681 Oct 21 12:11 input.tar.gz
[2025-10-21 14:28:00] -rw-r--r-- 2 boinc boinc     15120 Oct 21 12:11 start_atlas.sh
[2025-10-21 14:28:00] drwxrwx--x 2 boinc boinc      4096 Oct 21 12:11 shared
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc         0 Oct 21 12:11 boinc_setup_complete
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc      6208 Oct 21 12:11 init_data.xml
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc         0 Oct 21 12:11 boinc_lockfile
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc      2560 Oct 21 12:11 pandaJob.out
[2025-10-21 14:28:00] -rw------- 1 boinc boinc    978846 Oct 21 12:11 agis_schedconf.cvmfs.json
[2025-10-21 14:28:00] -rw------- 1 boinc boinc   1560740 Oct 21 12:11 agis_ddmendpoints.agis.ALL.json
[2025-10-21 14:28:00] drwx------ 5 boinc boinc      4096 Oct 21 12:11 pilot3
[2025-10-21 14:28:00] -rw------- 1 boinc boinc 205190759 Oct 21 14:26 HITS.46771637._059692.pool.root.1
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc       529 Oct 21 14:27 boinc_task_state.xml
[2025-10-21 14:28:00] -rw------- 1 boinc boinc        95 Oct 21 14:27 pilot_heartbeat.json
[2025-10-21 14:28:00] -rw------- 1 boinc boinc      1017 Oct 21 14:27 memory_monitor_summary.json
[2025-10-21 14:28:00] -rw------- 1 boinc boinc    280776 Oct 21 14:27 log.46771637._059692.job.log.tgz.1
[2025-10-21 14:28:00] -rw------- 1 boinc boinc      7757 Oct 21 14:27 heartbeat.json
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc      8192 Oct 21 14:27 boinc_mmap_file
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc        27 Oct 21 14:27 wrapper_checkpoint.txt
[2025-10-21 14:28:00] -rw------- 1 boinc boinc       747 Oct 21 14:28 pilotlog.txt
[2025-10-21 14:28:00] -rw------- 1 boinc boinc   1171036 Oct 21 14:28 log.46771637._059692.job.log.1
[2025-10-21 14:28:00] -rw------- 1 boinc boinc       357 Oct 21 14:28 output.list
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc       620 Oct 21 14:28 runtime_log
[2025-10-21 14:28:00] -rw------- 1 boinc boinc   1474560 Oct 21 14:28 result.tar.gz
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc      8797 Oct 21 14:28 runtime_log.err
[2025-10-21 14:28:00] -rw------- 1 boinc boinc       663 Oct 21 14:28 N5OODmNSHV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmteeMDm1W3Y1m.diag
[2025-10-21 14:28:00] -rw-r--r-- 1 boinc boinc     11206 Oct 21 14:28 stderr.txt
[2025-10-21 14:28:00] HITS file was successfully produced:
[2025-10-21 14:28:00] -rw------- 1 boinc boinc 205190759 Oct 21 14:26 shared/HITS.pool.root.1
[2025-10-21 14:28:00]  *** Contents of shared directory: ***
[2025-10-21 14:28:00] total 423372
[2025-10-21 14:28:00] -rw-r--r-- 2 boinc boinc 226264675 Oct 21 12:11 ATLAS.root_0
[2025-10-21 14:28:00] -rw-r--r-- 2 boinc boinc    569681 Oct 21 12:11 input.tar.gz
[2025-10-21 14:28:00] -rw-r--r-- 2 boinc boinc     15120 Oct 21 12:11 start_atlas.sh
[2025-10-21 14:28:00] -rw------- 1 boinc boinc 205190759 Oct 21 14:26 HITS.pool.root.1
[2025-10-21 14:28:00] -rw------- 1 boinc boinc   1474560 Oct 21 14:28 result.tar.gz
14:28:22 (4125540): run_atlas exited; CPU time 15887.378793
14:28:22 (4125540): called boinc_finish(0)

</stderr_txt>
]]>

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