Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:28:26 (5308): wrapper (7.7.26015): starting
20:28:26 (5308): wrapper: running run_atlas (--nthreads 8)
[2025-10-21 20:28:26] Arguments: --nthreads 8
[2025-10-21 20:28:26] Threads: 8
[2025-10-21 20:28:26] Checking for CVMFS
[2025-10-21 20:28:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 20:28:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 20:28:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 20:28:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 20:28:28] 2.11.2.0 5394 233750 141120 151968 0 60 22932272 25165824 4632 130560 0 134387078 99.896 68647499 3295 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-21 20:28:28] CVMFS is ok
[2025-10-21 20:28:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 20:28:28] Checking for apptainer binary...
[2025-10-21 20:28:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 20:28:28] Running /usr/bin/apptainer --version
[2025-10-21 20:28:28] apptainer version 1.3.2-1.el7
[2025-10-21 20:28:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 20:28:43] cg-vwn500.simple-grid.lan
[2025-10-21 20:28:43] apptainer works
[2025-10-21 20:28:43] Set ATHENA_PROC_NUMBER=8
[2025-10-21 20:28:43] Set ATHENA_CORE_NUMBER=8
[2025-10-21 20:28:43] Starting ATLAS job with PandaID=6853197010
[2025-10-21 20:28:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 23:43:09]  *** The last 200 lines of the pilot log: ***
[2025-10-21 23:43:09] 2025-10-21 21:42:01,136 | INFO     | monitor loop #863: job 0:6853197010 is in state 'finished'
[2025-10-21 23:43:09] 2025-10-21 21:42:01,137 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 23:43:09] 2025-10-21 21:42:01,591 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 23:43:09] 2025-10-21 21:42:01,592 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-10-21 23:43:09] 2025-10-21 21:42:01,593 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6853197010/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 23:43:09] 2025-10-21 21:42:01,594 | INFO     | extracted standard info from prmon json
[2025-10-21 23:43:09] 2025-10-21 21:42:01,594 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 23:43:09] 2025-10-21 21:42:01,594 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 23:43:09] 2025-10-21 21:42:01,594 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 23:43:09] 2025-10-21 21:42:01,595 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 23:43:09] 2025-10-21 21:42:01,598 | INFO     | fitting pss+swap vs Time
[2025-10-21 23:43:09] 2025-10-21 21:42:01,599 | INFO     | sum of square deviations: 1719429448.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,600 | INFO     | sum of deviations: -5579092268.999998
[2025-10-21 23:43:09] 2025-10-21 21:42:01,600 | INFO     | mean x: 1761077390.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,600 | INFO     | mean y: 2492851.1242937855
[2025-10-21 23:43:09] 2025-10-21 21:42:01,600 | INFO     | -- intersect: 5716721639.684447
[2025-10-21 23:43:09] 2025-10-21 21:42:01,600 | INFO     | intersect: 5716721639.684447
[2025-10-21 23:43:09] 2025-10-21 21:42:01,601 | INFO     | chi2: 1.661214166280795
[2025-10-21 23:43:09] 2025-10-21 21:42:01,601 | INFO     | sum of square deviations: 1577789583.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,602 | INFO     | sum of deviations: -5380910406.000001
[2025-10-21 23:43:09] 2025-10-21 21:42:01,602 | INFO     | mean x: 1761077237.5
[2025-10-21 23:43:09] 2025-10-21 21:42:01,602 | INFO     | mean y: 2493068.802325581
[2025-10-21 23:43:09] 2025-10-21 21:42:01,602 | INFO     | -- intersect: 6008489644.730718
[2025-10-21 23:43:09] 2025-10-21 21:42:01,602 | INFO     | intersect: 6008489644.730718
[2025-10-21 23:43:09] 2025-10-21 21:42:01,603 | INFO     | chi2: 1.6602677534289456
[2025-10-21 23:43:09] 2025-10-21 21:42:01,603 | INFO     | current chi2=1.6602677534289456 (change=0.05697115224874113 %)
[2025-10-21 23:43:09] 2025-10-21 21:42:01,603 | INFO     | right removable region: 171
[2025-10-21 23:43:09] 2025-10-21 21:42:01,603 | INFO     | sum of square deviations: 1577789583.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,604 | INFO     | sum of deviations: -31761607947.499996
[2025-10-21 23:43:09] 2025-10-21 21:42:01,604 | INFO     | mean x: 1761077542.5
[2025-10-21 23:43:09] 2025-10-21 21:42:01,604 | INFO     | mean y: 2520660.2965116277
[2025-10-21 23:43:09] 2025-10-21 21:42:01,604 | INFO     | -- intersect: 35453796972.86915
[2025-10-21 23:43:09] 2025-10-21 21:42:01,605 | INFO     | intersect: 35453796972.86915
[2025-10-21 23:43:09] 2025-10-21 21:42:01,605 | INFO     | chi2: 0.18077559177988484
[2025-10-21 23:43:09] 2025-10-21 21:42:01,605 | INFO     | current chi2=0.18077559177988484 (change=89.11786358139398 %)
[2025-10-21 23:43:09] 2025-10-21 21:42:01,605 | INFO     | sum of square deviations: 1444149868.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,606 | INFO     | sum of deviations: -30094812441.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,606 | INFO     | mean x: 1761077695.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,606 | INFO     | mean y: 2518697.143712575
[2025-10-21 23:43:09] 2025-10-21 21:42:01,607 | INFO     | -- intersect: 36701828165.94021
[2025-10-21 23:43:09] 2025-10-21 21:42:01,607 | INFO     | intersect: 36701828165.94021
[2025-10-21 23:43:09] 2025-10-21 21:42:01,607 | INFO     | chi2: 0.16526311001441446
[2025-10-21 23:43:09] 2025-10-21 21:42:01,607 | INFO     | current chi2=0.16526311001441446 (change=8.58107093592514 %)
[2025-10-21 23:43:09] 2025-10-21 21:42:01,607 | INFO     | left removable region: 20
[2025-10-21 23:43:09] 2025-10-21 21:42:01,607 | INFO     | sum of square deviations: 1067554900.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,608 | INFO     | sum of deviations: -18490194400.999992
[2025-10-21 23:43:09] 2025-10-21 21:42:01,608 | INFO     | mean x: 1761077817.0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,608 | INFO     | mean y: 2505713.6291390727
[2025-10-21 23:43:09] 2025-10-21 21:42:01,609 | INFO     | -- intersect: 30504610281.38363
[2025-10-21 23:43:09] 2025-10-21 21:42:01,609 | INFO     | intersect: 30504610281.38363
[2025-10-21 23:43:09] 2025-10-21 21:42:01,609 | INFO     | chi2: 0.1369378231462023
[2025-10-21 23:43:09] 2025-10-21 21:42:01,609 | INFO     | -- intersect: 30504610281.38363
[2025-10-21 23:43:09] 2025-10-21 21:42:01,609 | INFO     | current memory leak: -17.32 B/s (using 151 data points, chi2=0.14)
[2025-10-21 23:43:09] 2025-10-21 21:42:01,610 | INFO     | could have reported an average CPU frequency of 2249 MHz (9 samples)
[2025-10-21 23:43:09] 2025-10-21 21:42:01,610 | INFO     | ..............................
[2025-10-21 23:43:09] 2025-10-21 21:42:01,610 | INFO     | . Timing measurements:
[2025-10-21 23:43:09] 2025-10-21 21:42:01,610 | INFO     | . get job = 0 s
[2025-10-21 23:43:09] 2025-10-21 21:42:01,610 | INFO     | . initial setup = 9 s
[2025-10-21 23:43:09] 2025-10-21 21:42:01,610 | INFO     | . payload setup = 141 s
[2025-10-21 23:43:09] 2025-10-21 21:42:01,611 | INFO     | . stage-in = 0 s
[2025-10-21 23:43:09] 2025-10-21 21:42:01,611 | INFO     | . payload execution = 10928 s
[2025-10-21 23:43:09] 2025-10-21 21:42:01,611 | INFO     | . stage-out = 4 s
[2025-10-21 23:43:09] 2025-10-21 21:42:01,611 | INFO     | . log creation = 1 s
[2025-10-21 23:43:09] 2025-10-21 21:42:01,611 | INFO     | ..............................
[2025-10-21 23:43:09] 2025-10-21 21:42:01,715 | INFO     | 
[2025-10-21 23:43:09] 2025-10-21 21:42:01,715 | INFO     | job summary report
[2025-10-21 23:43:09] 2025-10-21 21:42:01,715 | INFO     | --------------------------------------------------
[2025-10-21 23:43:09] 2025-10-21 21:42:01,715 | INFO     | PanDA job id: 6853197010
[2025-10-21 23:43:09] 2025-10-21 21:42:01,715 | INFO     | task id: 46809188
[2025-10-21 23:43:09] 2025-10-21 21:42:01,715 | INFO     | errors: (none)
[2025-10-21 23:43:09] 2025-10-21 21:42:01,715 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | pilot state: finished 
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | transexitcode: 0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | exeerrorcode: 0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | exeerrordiag: 
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | exitcode: 0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | exitmsg: OK
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | cpuconsumptiontime: 39888 s
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | nevents: 400
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | neventsw: 0
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | pid: 15662
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | pgrp: 15662
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | corecount: 8
[2025-10-21 23:43:09] 2025-10-21 21:42:01,716 | INFO     | event service: False
[2025-10-21 23:43:09] 2025-10-21 21:42:01,717 | INFO     | sizes: {0: 2348667, 1: 2348866, 12: 2348866, 22: 2348894, 33: 2348922, 44: 2348978, 55: 2349134, 65: 2349162, 76: 2349190, 87: 2349246, 96: 2349536, 98: 2349844, 1
[2025-10-21 23:43:09] 2025-10-21 21:42:01,717 | INFO     | --------------------------------------------------
[2025-10-21 23:43:09] 2025-10-21 21:42:01,717 | INFO     | 
[2025-10-21 23:43:09] 2025-10-21 21:42:01,717 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2025-10-21 23:43:09] 2025-10-21 21:42:02,170 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,170 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,170 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,170 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 23:43:09] 2025-10-21 21:42:02,171 | INFO     | job 6853197010 has completed (purged errors)
[2025-10-21 23:43:09] 2025-10-21 21:42:02,172 | INFO     | overall cleanup function is called
[2025-10-21 23:43:09] 2025-10-21 21:42:03,180 | INFO     | --- collectZombieJob: --- 10, [15662]
[2025-10-21 23:43:09] 2025-10-21 21:42:03,181 | INFO     | zombie collector waiting for pid 15662
[2025-10-21 23:43:09] 2025-10-21 21:42:03,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 23:43:09] 2025-10-21 21:42:03,181 | INFO     | collected zombie processes
[2025-10-21 23:43:09] 2025-10-21 21:42:03,181 | INFO     | will attempt to kill all subprocesses of pid=15662
[2025-10-21 23:43:09] 2025-10-21 21:42:03,299 | INFO     | process IDs to be killed: [15662] (in reverse order)
[2025-10-21 23:43:09] 2025-10-21 21:42:04,180 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 23:43:09] 2025-10-21 21:42:04,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 23:43:09] 2025-10-21 21:42:04,183 | INFO     | did not find any defunct processes belonging to 15662
[2025-10-21 23:43:09] 2025-10-21 21:42:04,187 | INFO     | did not find any defunct processes belonging to 15662
[2025-10-21 23:43:09] 2025-10-21 21:42:04,188 | INFO     | ready for new job
[2025-10-21 23:43:09] 2025-10-21 21:42:04,188 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 23:43:09] 2025-10-21 21:42:04,190 | INFO     | ***************************************
[2025-10-21 23:43:09] 2025-10-21 21:42:04,190 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 23:43:09] 2025-10-21 21:42:04,190 | INFO     | ***************************************
[2025-10-21 23:43:09] 2025-10-21 21:42:04,190 | INFO     | 
[2025-10-21 23:43:09] 2025-10-21 21:42:04,191 | INFO     | pilot is running in a VM
[2025-10-21 23:43:09] 2025-10-21 21:42:04,191 | INFO     | architecture information:
[2025-10-21 23:43:09] 2025-10-21 21:42:04,192 | INFO     | executing command: cat /etc/os-release
[2025-10-21 23:43:09] 2025-10-21 21:42:04,242 | INFO     | cat /etc/os-release:
[2025-10-21 23:43:09] NAME="CentOS Linux"
[2025-10-21 23:43:09] VERSION="7 (Core)"
[2025-10-21 23:43:09] ID="centos"
[2025-10-21 23:43:09] ID_LIKE="rhel fedora"
[2025-10-21 23:43:09] VERSION_ID="7"
[2025-10-21 23:43:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 23:43:09] ANSI_COLOR="0;31"
[2025-10-21 23:43:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 23:43:09] HOME_URL="https://www.centos.org/"
[2025-10-21 23:43:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 23:43:09] 
[2025-10-21 23:43:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 23:43:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 23:43:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 23:43:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 23:43:09] 
[2025-10-21 23:43:09] 2025-10-21 21:42:04,242 | INFO     | ***************************************
[2025-10-21 23:43:09] 2025-10-21 21:42:04,747 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2025-10-21 23:43:09] 2025-10-21 21:42:04,889 | INFO     | sufficient remaining disk space (496493395968 B)
[2025-10-21 23:43:09] 2025-10-21 21:42:04,889 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 23:43:09] 2025-10-21 21:42:04,889 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 23:43:09] 2025-10-21 21:42:04,890 | INFO     | update_server=False
[2025-10-21 23:43:09] 2025-10-21 21:42:04,890 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 23:43:09] 2025-10-21 21:42:04,890 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 23:43:09] 2025-10-21 21:42:04,890 | INFO     | aborting loop
[2025-10-21 23:43:09] 2025-10-21 21:42:05,283 | INFO     | all data control threads have been joined
[2025-10-21 23:43:09] 2025-10-21 21:42:05,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 23:43:09] 2025-10-21 21:42:05,895 | INFO     | [job] retrieve thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:05,896 | INFO     | [job] job monitor thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:06,010 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:06,100 | INFO     | all job control threads have been joined
[2025-10-21 23:43:09] 2025-10-21 21:42:06,147 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 23:43:09] 2025-10-21 21:42:06,192 | INFO     | [data] copytool_in thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:06,256 | INFO     | [payload] validate_post thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:06,289 | INFO     | [data] control thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:06,396 | INFO     | all payload control threads have been joined
[2025-10-21 23:43:09] 2025-10-21 21:42:06,646 | INFO     | [payload] failed_post thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:06,729 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 23:43:09] 2025-10-21 21:42:06,744 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:07,045 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:07,106 | INFO     | [job] control thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:07,253 | INFO     | [job] validate thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:07,393 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:07,402 | INFO     | [payload] control thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:07,734 | INFO     | [job] queue monitor thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:08,154 | INFO     | [data] copytool_out thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:09,853 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 23:43:09] 2025-10-21 21:42:33,731 | INFO     | PID=9110 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-21 23:43:09] 2025-10-21 21:42:33,731 | INFO     | .. there are 9 such processes running
[2025-10-21 23:43:09] 2025-10-21 21:42:33,731 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 23:43:09] 2025-10-21 21:42:33,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 23:43:09] 2025-10-21 21:42:33,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 23:43:09] 2025-10-21 21:42:57,963 | INFO     | [monitor] cgroup control has ended
[2025-10-21 23:43:09] 2025-10-21 21:42:59,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683528902464)>', '<ExcThread(monitor, started 140682786236160)>']
[2025-10-21 23:43:09] 2025-10-21 21:42:59,883 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 23:43:09] 2025-10-21 21:42:59,884 | INFO     | [monitor] control thread has ended
[2025-10-21 23:43:09] 2025-10-21 21:43:04,058 | INFO     | all workflow threads have been joined
[2025-10-21 23:43:09] 2025-10-21 21:43:04,059 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 23:43:09] 2025-10-21 21:43:04,059 | INFO     | traces error code: 0
[2025-10-21 23:43:09] 2025-10-21 21:43:04,059 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 23:43:09] 2025-10-21 21:43:04,500 [wrapper] ==== pilot stdout END ====
[2025-10-21 23:43:09] 2025-10-21 21:43:04,651 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 23:43:09] 2025-10-21 21:43:04,772 [wrapper] pilotpid: 9110
[2025-10-21 23:43:09] 2025-10-21 21:43:04,876 [wrapper] Pilot exit status: 0
[2025-10-21 23:43:09] 2025-10-21 21:43:05,368 [wrapper] pandaids: 6853197010
[2025-10-21 23:43:09] 2025-10-21 21:43:06,514 [wrapper] cleanup supervisor_pilot 17737 9111
[2025-10-21 23:43:09] 2025-10-21 21:43:06,599 [wrapper] Test setup, not cleaning
[2025-10-21 23:43:09] 2025-10-21 21:43:06,676 [wrapper] apfmon messages muted
[2025-10-21 23:43:09] 2025-10-21 21:43:06,780 [wrapper] ==== wrapper stdout END ====
[2025-10-21 23:43:09] 2025-10-21 21:43:06,889 [wrapper] ==== wrapper stderr END ====
[2025-10-21 23:43:09]  *** Error codes and diagnostics ***
[2025-10-21 23:43:09]     "exeErrorCode": 0,
[2025-10-21 23:43:09]     "exeErrorDiag": "",
[2025-10-21 23:43:09]     "pilotErrorCode": 0,
[2025-10-21 23:43:09]     "pilotErrorDiag": "",
[2025-10-21 23:43:09]  *** Listing of results directory ***
[2025-10-21 23:43:09] total 333800
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc    557409 Oct 21 02:53 pilot3.tar.gz
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc      5112 Oct 21 03:13 queuedata.json
[2025-10-21 23:43:09] -rwx------. 1 boinc boinc     36292 Oct 21 03:17 runpilot2-wrapper.sh
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc       100 Oct 21 20:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 23:43:09] -rwxr-xr-x. 1 boinc boinc      7986 Oct 21 20:28 run_atlas
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc       105 Oct 21 20:28 job.xml
[2025-10-21 23:43:09] -rw-r--r--. 2 boinc boinc 190329143 Oct 21 20:28 EVNT.46809186._000153.pool.root.1
[2025-10-21 23:43:09] -rw-r--r--. 2 boinc boinc     15120 Oct 21 20:28 start_atlas.sh
[2025-10-21 23:43:09] drwxrwx--x. 2 boinc boinc        68 Oct 21 20:28 shared
[2025-10-21 23:43:09] -rw-r--r--. 2 boinc boinc    569674 Oct 21 20:28 input.tar.gz
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc      6390 Oct 21 20:28 init_data.xml
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc         0 Oct 21 20:28 boinc_lockfile
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc      2492 Oct 21 20:28 pandaJob.out
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc    978456 Oct 21 20:32 agis_schedconf.cvmfs.json
[2025-10-21 23:43:09] drwx------. 5 boinc boinc      4096 Oct 21 20:32 pilot3
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc 143687699 Oct 21 23:39 HITS.46809188._003866.pool.root.1
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc       531 Oct 21 23:39 boinc_task_state.xml
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc      1031 Oct 21 23:40 memory_monitor_summary.json
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc   1560740 Oct 21 23:40 agis_ddmendpoints.agis.ALL.json
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc    417805 Oct 21 23:40 log.46809188._003866.job.log.tgz.1
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc        95 Oct 21 23:41 pilot_heartbeat.json
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc      7781 Oct 21 23:42 heartbeat.json
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc        28 Oct 21 23:42 wrapper_checkpoint.txt
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc      8192 Oct 21 23:42 boinc_mmap_file
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc      4883 Oct 21 23:43 pilotlog.txt
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc   1533877 Oct 21 23:43 log.46809188._003866.job.log.1
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc       357 Oct 21 23:43 output.list
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc       620 Oct 21 23:43 runtime_log
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc   1966080 Oct 21 23:43 result.tar.gz
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc      8703 Oct 21 23:43 runtime_log.err
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc       656 Oct 21 23:43 0hWMDm7AGV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCh0NDmIJv6Yn.diag
[2025-10-21 23:43:09] -rw-r--r--. 1 boinc boinc     20809 Oct 21 23:43 stderr.txt
[2025-10-21 23:43:09] HITS file was successfully produced:
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc 143687699 Oct 21 23:39 shared/HITS.pool.root.1
[2025-10-21 23:43:09]  *** Contents of shared directory: ***
[2025-10-21 23:43:09] total 328692
[2025-10-21 23:43:09] -rw-r--r--. 2 boinc boinc 190329143 Oct 21 20:28 ATLAS.root_0
[2025-10-21 23:43:09] -rw-r--r--. 2 boinc boinc     15120 Oct 21 20:28 start_atlas.sh
[2025-10-21 23:43:09] -rw-r--r--. 2 boinc boinc    569674 Oct 21 20:28 input.tar.gz
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc 143687699 Oct 21 23:39 HITS.pool.root.1
[2025-10-21 23:43:09] -rw-------. 1 boinc boinc   1966080 Oct 21 23:43 result.tar.gz
23:43:11 (5308): run_atlas exited; CPU time 40027.157478
23:43:11 (5308): called boinc_finish(0)

</stderr_txt>
]]>

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