Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:17:28 (138926): wrapper (7.7.26015): starting
13:17:28 (138926): wrapper: running run_atlas (--nthreads 3)
[2025-10-21 13:17:28] Arguments: --nthreads 3
[2025-10-21 13:17:28] Threads: 3
[2025-10-21 13:17:28] Checking for CVMFS
[2025-10-21 13:17:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 13:17:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 13:17:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 13:17:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 13:17:28] 2.9.2.0 4130834 713 70872 151957 0 56 31872935 36864001 0 130560 0 531135 99.987 26909 2228 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 13:17:28] CVMFS is ok
[2025-10-21 13:17:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 13:17:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 13:17:28] Further information can be found at the LHC@home message board.
[2025-10-21 13:17:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 13:17:28] Checking for apptainer binary...
[2025-10-21 13:17:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 13:17:28] Running /usr/bin/apptainer --version
[2025-10-21 13:17:28] apptainer version 1.4.1-1.1
[2025-10-21 13:17:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 13:17:28] magicA161a
[2025-10-21 13:17:28] apptainer works
[2025-10-21 13:17:28] Set ATHENA_PROC_NUMBER=3
[2025-10-21 13:17:28] Set ATHENA_CORE_NUMBER=3
[2025-10-21 13:17:28] Starting ATLAS job with PandaID=6853275051
[2025-10-21 13:17:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 14:20:46]  *** The last 200 lines of the pilot log: ***
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 14:20:46] 2025-10-21 12:20:00,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,751 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 14:20:46] 2025-10-21 12:20:00,751 | INFO     | job 6853275051 has completed (purged errors)
[2025-10-21 14:20:46] 2025-10-21 12:20:00,751 | INFO     | overall cleanup function is called
[2025-10-21 14:20:46] 2025-10-21 12:20:01,757 | INFO     | --- collectZombieJob: --- 10, [149071]
[2025-10-21 14:20:46] 2025-10-21 12:20:01,757 | INFO     | zombie collector waiting for pid 149071
[2025-10-21 14:20:46] 2025-10-21 12:20:01,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 14:20:46] 2025-10-21 12:20:01,757 | INFO     | collected zombie processes
[2025-10-21 14:20:46] 2025-10-21 12:20:01,757 | INFO     | will attempt to kill all subprocesses of pid=149071
[2025-10-21 14:20:46] 2025-10-21 12:20:01,800 | INFO     | process IDs to be killed: [149071] (in reverse order)
[2025-10-21 14:20:46] 2025-10-21 12:20:01,824 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 14:20:46] 2025-10-21 12:20:01,824 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 14:20:46] 2025-10-21 12:20:01,825 | INFO     | did not find any defunct processes belonging to 149071
[2025-10-21 14:20:46] 2025-10-21 12:20:01,826 | INFO     | did not find any defunct processes belonging to 149071
[2025-10-21 14:20:46] 2025-10-21 12:20:01,826 | INFO     | ready for new job
[2025-10-21 14:20:46] 2025-10-21 12:20:01,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 14:20:46] 2025-10-21 12:20:01,827 | INFO     | ***************************************
[2025-10-21 14:20:46] 2025-10-21 12:20:01,827 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 14:20:46] 2025-10-21 12:20:01,827 | INFO     | ***************************************
[2025-10-21 14:20:46] 2025-10-21 12:20:01,828 | INFO     | 
[2025-10-21 14:20:46] 2025-10-21 12:20:01,828 | INFO     | architecture information:
[2025-10-21 14:20:46] 2025-10-21 12:20:01,828 | INFO     | executing command: cat /etc/os-release
[2025-10-21 14:20:46] 2025-10-21 12:20:01,836 | INFO     | cat /etc/os-release:
[2025-10-21 14:20:46] NAME="CentOS Linux"
[2025-10-21 14:20:46] VERSION="7 (Core)"
[2025-10-21 14:20:46] ID="centos"
[2025-10-21 14:20:46] ID_LIKE="rhel fedora"
[2025-10-21 14:20:46] VERSION_ID="7"
[2025-10-21 14:20:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 14:20:46] ANSI_COLOR="0;31"
[2025-10-21 14:20:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 14:20:46] HOME_URL="https://www.centos.org/"
[2025-10-21 14:20:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 14:20:46] 
[2025-10-21 14:20:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 14:20:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 14:20:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 14:20:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 14:20:46] 
[2025-10-21 14:20:46] 2025-10-21 12:20:01,836 | INFO     | ***************************************
[2025-10-21 14:20:46] 2025-10-21 12:20:02,339 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-21 14:20:46] 2025-10-21 12:20:02,352 | INFO     | sufficient remaining disk space (372897742848 B)
[2025-10-21 14:20:46] 2025-10-21 12:20:02,352 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 14:20:46] 2025-10-21 12:20:02,353 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 14:20:46] 2025-10-21 12:20:02,353 | INFO     | update_server=False
[2025-10-21 14:20:46] 2025-10-21 12:20:02,353 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 14:20:46] 2025-10-21 12:20:02,353 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 14:20:46] 2025-10-21 12:20:02,820 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 14:20:46] 2025-10-21 12:20:02,960 | WARNING  | process 149071 can no longer be monitored (due to stat problems) - aborting
[2025-10-21 14:20:46] 2025-10-21 12:20:02,990 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 14:20:46] 2025-10-21 12:20:03,017 | INFO     | all payload control threads have been joined
[2025-10-21 14:20:46] 2025-10-21 12:20:03,027 | INFO     | number of running child processes to parent process 149071: 1
[2025-10-21 14:20:46] 2025-10-21 12:20:03,027 | INFO     | maximum number of monitored processes: 6
[2025-10-21 14:20:46] 2025-10-21 12:20:03,027 | INFO     | aborting job monitoring since job object (job id=6853275051) has expired
[2025-10-21 14:20:46] 2025-10-21 12:20:03,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 14:20:46] 2025-10-21 12:20:03,027 | INFO     | will abort loop
[2025-10-21 14:20:46] 2025-10-21 12:20:03,219 | INFO     | all data control threads have been joined
[2025-10-21 14:20:46] 2025-10-21 12:20:03,359 | INFO     | [job] queue monitor thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:03,359 | INFO     | [job] retrieve thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:03,455 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:03,480 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:03,621 | INFO     | all job control threads have been joined
[2025-10-21 14:20:46] 2025-10-21 12:20:03,874 | INFO     | [payload] validate_post thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:03,987 | INFO     | [data] copytool_in thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,022 | INFO     | [payload] control thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,032 | INFO     | [job] job monitor thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,224 | INFO     | [data] control thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 14:20:46] 2025-10-21 12:20:04,587 | INFO     | [job] validate thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,627 | INFO     | [job] control thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,639 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,675 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,675 | INFO     | [payload] failed_post thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:04,821 | INFO     | [data] copytool_out thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:08,469 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 14:20:46] 2025-10-21 12:20:32,207 | INFO     | PID=142637 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-21 14:20:46] 2025-10-21 12:20:32,207 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 14:20:46] 2025-10-21 12:20:32,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 14:20:46] 2025-10-21 12:20:32,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 14:20:46] 2025-10-21 12:20:38,895 | INFO     | [monitor] cgroup control has ended
[2025-10-21 14:20:46] 2025-10-21 12:20:40,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140025016846144)>', '<ExcThread(monitor, started 140024743958272)>']
[2025-10-21 14:20:46] 2025-10-21 12:20:41,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 14:20:46] 2025-10-21 12:20:41,256 | INFO     | [monitor] control thread has ended
[2025-10-21 14:20:46] 2025-10-21 12:20:46,000 | INFO     | all workflow threads have been joined
[2025-10-21 14:20:46] 2025-10-21 12:20:46,001 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 14:20:46] 2025-10-21 12:20:46,001 | INFO     | traces error code: 0
[2025-10-21 14:20:46] 2025-10-21 12:20:46,001 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 14:20:46] 2025-10-21 12:20:46,050 [wrapper] ==== pilot stdout END ====
[2025-10-21 14:20:46] 2025-10-21 12:20:46,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 14:20:46] 2025-10-21 12:20:46,054 [wrapper] pilotpid: 142637
[2025-10-21 14:20:46] 2025-10-21 12:20:46,056 [wrapper] Pilot exit status: 0
[2025-10-21 14:20:46] 2025-10-21 12:20:46,064 [wrapper] pandaids: 6853275051
[2025-10-21 14:20:46] 2025-10-21 12:20:46,079 [wrapper] cleanup supervisor_pilot  158572 142638
[2025-10-21 14:20:46] 2025-10-21 12:20:46,082 [wrapper] Test setup, not cleaning
[2025-10-21 14:20:46] 2025-10-21 12:20:46,084 [wrapper] apfmon messages muted
[2025-10-21 14:20:46] 2025-10-21 12:20:46,086 [wrapper] ==== wrapper stdout END ====
[2025-10-21 14:20:46] 2025-10-21 12:20:46,088 [wrapper] ==== wrapper stderr END ====
[2025-10-21 14:20:46]  *** Error codes and diagnostics ***
[2025-10-21 14:20:46]     "exeErrorCode": 0,
[2025-10-21 14:20:46]     "exeErrorDiag": "",
[2025-10-21 14:20:46]     "pilotErrorCode": 0,
[2025-10-21 14:20:46]     "pilotErrorDiag": "",
[2025-10-21 14:20:46]  *** Listing of results directory ***
[2025-10-21 14:20:46] total 330584
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc    557409 Oct 21 03:53 pilot3.tar.gz
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc      5112 Oct 21 04:13 queuedata.json
[2025-10-21 14:20:46] -rwx------ 1 boinc boinc     36292 Oct 21 04:15 runpilot2-wrapper.sh
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc       100 Oct 21 13:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 14:20:46] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 13:17 run_atlas
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc       105 Oct 21 13:17 job.xml
[2025-10-21 14:20:46] -rw-r--r-- 2 boinc boinc 187585614 Oct 21 13:17 EVNT.46809186._000150.pool.root.1
[2025-10-21 14:20:46] -rw-r--r-- 2 boinc boinc    569671 Oct 21 13:17 input.tar.gz
[2025-10-21 14:20:46] -rw-r--r-- 2 boinc boinc     15120 Oct 21 13:17 start_atlas.sh
[2025-10-21 14:20:46] drwxrwx--x 2 boinc boinc      4096 Oct 21 13:17 shared
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc         0 Oct 21 13:17 boinc_setup_complete
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc      6448 Oct 21 13:17 init_data.xml
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc         0 Oct 21 13:17 boinc_lockfile
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc      2492 Oct 21 13:17 pandaJob.out
[2025-10-21 14:20:46] -rw------- 1 boinc boinc    978838 Oct 21 13:17 agis_schedconf.cvmfs.json
[2025-10-21 14:20:46] -rw------- 1 boinc boinc   1560740 Oct 21 13:17 agis_ddmendpoints.agis.ALL.json
[2025-10-21 14:20:46] drwx------ 5 boinc boinc      4096 Oct 21 13:17 pilot3
[2025-10-21 14:20:46] -rw------- 1 boinc boinc 145440215 Oct 21 14:19 HITS.46809188._004211.pool.root.1
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc       529 Oct 21 14:19 boinc_task_state.xml
[2025-10-21 14:20:46] -rw------- 1 boinc boinc        95 Oct 21 14:19 pilot_heartbeat.json
[2025-10-21 14:20:46] -rw------- 1 boinc boinc      1013 Oct 21 14:19 memory_monitor_summary.json
[2025-10-21 14:20:46] -rw------- 1 boinc boinc    233157 Oct 21 14:19 log.46809188._004211.job.log.tgz.1
[2025-10-21 14:20:46] -rw------- 1 boinc boinc      7751 Oct 21 14:20 heartbeat.json
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc      8192 Oct 21 14:20 boinc_mmap_file
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc        27 Oct 21 14:20 wrapper_checkpoint.txt
[2025-10-21 14:20:46] -rw------- 1 boinc boinc      5273 Oct 21 14:20 pilotlog.txt
[2025-10-21 14:20:46] -rw------- 1 boinc boinc    563884 Oct 21 14:20 log.46809188._004211.job.log.1
[2025-10-21 14:20:46] -rw------- 1 boinc boinc       357 Oct 21 14:20 output.list
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc       620 Oct 21 14:20 runtime_log
[2025-10-21 14:20:46] -rw------- 1 boinc boinc    819200 Oct 21 14:20 result.tar.gz
[2025-10-21 14:20:46] -rw------- 1 boinc boinc       662 Oct 21 14:20 zMNODme5GV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6y0NDmSDkJLn.diag
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc      8797 Oct 21 14:20 runtime_log.err
[2025-10-21 14:20:46] -rw-r--r-- 1 boinc boinc     12658 Oct 21 14:20 stderr.txt
[2025-10-21 14:20:46] HITS file was successfully produced:
[2025-10-21 14:20:46] -rw------- 1 boinc boinc 145440215 Oct 21 14:19 shared/HITS.pool.root.1
[2025-10-21 14:20:46]  *** Contents of shared directory: ***
[2025-10-21 14:20:46] total 326608
[2025-10-21 14:20:46] -rw-r--r-- 2 boinc boinc 187585614 Oct 21 13:17 ATLAS.root_0
[2025-10-21 14:20:46] -rw-r--r-- 2 boinc boinc    569671 Oct 21 13:17 input.tar.gz
[2025-10-21 14:20:46] -rw-r--r-- 2 boinc boinc     15120 Oct 21 13:17 start_atlas.sh
[2025-10-21 14:20:46] -rw------- 1 boinc boinc 145440215 Oct 21 14:19 HITS.pool.root.1
[2025-10-21 14:20:46] -rw------- 1 boinc boinc    819200 Oct 21 14:20 result.tar.gz
14:20:47 (138926): run_atlas exited; CPU time 10543.440249
14:20:47 (138926): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN