Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:52:23 (63324): wrapper (7.7.26015): starting
08:52:23 (63324): wrapper: running run_atlas (--nthreads 3)
[2025-10-21 08:52:23] Arguments: --nthreads 3
[2025-10-21 08:52:23] Threads: 3
[2025-10-21 08:52:23] Checking for CVMFS
[2025-10-21 08:52:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 08:52:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 08:52:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 08:52:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 08:52:23] 2.9.2.0 4130834 447 62812 151949 1 57 31800896 36864000 0 130560 0 333951 99.987 16180 1570 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 08:52:23] CVMFS is ok
[2025-10-21 08:52:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 08:52:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 08:52:23] Further information can be found at the LHC@home message board.
[2025-10-21 08:52:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 08:52:23] Checking for apptainer binary...
[2025-10-21 08:52:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 08:52:23] Running /usr/bin/apptainer --version
[2025-10-21 08:52:23] apptainer version 1.4.1-1.1
[2025-10-21 08:52:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 08:52:24] magicA161a
[2025-10-21 08:52:24] apptainer works
[2025-10-21 08:52:24] Set ATHENA_PROC_NUMBER=3
[2025-10-21 08:52:24] Set ATHENA_CORE_NUMBER=3
[2025-10-21 08:52:24] Starting ATLAS job with PandaID=6852955886
[2025-10-21 08:52:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 10:20:58]  *** The last 200 lines of the pilot log: ***
[2025-10-21 10:20:58] 2025-10-21 08:20:26,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,911 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,911 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,911 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,911 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,911 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | job 6852955886 has completed (purged errors)
[2025-10-21 10:20:58] 2025-10-21 08:20:26,912 | INFO     | overall cleanup function is called
[2025-10-21 10:20:58] 2025-10-21 08:20:27,916 | INFO     | --- collectZombieJob: --- 10, [73472]
[2025-10-21 10:20:58] 2025-10-21 08:20:27,916 | INFO     | zombie collector waiting for pid 73472
[2025-10-21 10:20:58] 2025-10-21 08:20:27,916 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 10:20:58] 2025-10-21 08:20:27,916 | INFO     | collected zombie processes
[2025-10-21 10:20:58] 2025-10-21 08:20:27,916 | INFO     | will attempt to kill all subprocesses of pid=73472
[2025-10-21 10:20:58] 2025-10-21 08:20:27,958 | INFO     | process IDs to be killed: [73472] (in reverse order)
[2025-10-21 10:20:58] 2025-10-21 08:20:27,982 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 10:20:58] 2025-10-21 08:20:27,982 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 10:20:58] 2025-10-21 08:20:27,983 | INFO     | did not find any defunct processes belonging to 73472
[2025-10-21 10:20:58] 2025-10-21 08:20:27,984 | INFO     | did not find any defunct processes belonging to 73472
[2025-10-21 10:20:58] 2025-10-21 08:20:27,985 | INFO     | ready for new job
[2025-10-21 10:20:58] 2025-10-21 08:20:27,985 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 10:20:58] 2025-10-21 08:20:27,985 | INFO     | ***************************************
[2025-10-21 10:20:58] 2025-10-21 08:20:27,985 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 10:20:58] 2025-10-21 08:20:27,985 | INFO     | ***************************************
[2025-10-21 10:20:58] 2025-10-21 08:20:27,985 | INFO     | 
[2025-10-21 10:20:58] 2025-10-21 08:20:27,986 | INFO     | architecture information:
[2025-10-21 10:20:58] 2025-10-21 08:20:27,986 | INFO     | executing command: cat /etc/os-release
[2025-10-21 10:20:58] 2025-10-21 08:20:27,994 | INFO     | cat /etc/os-release:
[2025-10-21 10:20:58] NAME="CentOS Linux"
[2025-10-21 10:20:58] VERSION="7 (Core)"
[2025-10-21 10:20:58] ID="centos"
[2025-10-21 10:20:58] ID_LIKE="rhel fedora"
[2025-10-21 10:20:58] VERSION_ID="7"
[2025-10-21 10:20:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 10:20:58] ANSI_COLOR="0;31"
[2025-10-21 10:20:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 10:20:58] HOME_URL="https://www.centos.org/"
[2025-10-21 10:20:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 10:20:58] 
[2025-10-21 10:20:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 10:20:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 10:20:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 10:20:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 10:20:58] 
[2025-10-21 10:20:58] 2025-10-21 08:20:27,994 | INFO     | ***************************************
[2025-10-21 10:20:58] 2025-10-21 08:20:28,497 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-21 10:20:58] 2025-10-21 08:20:28,509 | INFO     | sufficient remaining disk space (373296201728 B)
[2025-10-21 10:20:58] 2025-10-21 08:20:28,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 10:20:58] 2025-10-21 08:20:28,510 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 10:20:58] 2025-10-21 08:20:28,510 | INFO     | update_server=False
[2025-10-21 10:20:58] 2025-10-21 08:20:28,510 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 10:20:58] 2025-10-21 08:20:28,510 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 10:20:58] 2025-10-21 08:20:28,887 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 10:20:58] 2025-10-21 08:20:28,887 | INFO     | aborting loop
[2025-10-21 10:20:58] 2025-10-21 08:20:28,990 | INFO     | all data control threads have been joined
[2025-10-21 10:20:58] 2025-10-21 08:20:29,225 | INFO     | all payload control threads have been joined
[2025-10-21 10:20:58] 2025-10-21 08:20:29,516 | INFO     | [job] queue monitor thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:29,516 | INFO     | [job] retrieve thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:29,552 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 10:20:58] 2025-10-21 08:20:29,609 | INFO     | all job control threads have been joined
[2025-10-21 10:20:58] 2025-10-21 08:20:29,889 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:29,892 | INFO     | [job] job monitor thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:29,996 | INFO     | [data] control thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:30,218 | INFO     | [data] copytool_in thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:30,231 | INFO     | [payload] control thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:30,522 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 10:20:58] 2025-10-21 08:20:30,609 | INFO     | [payload] validate_post thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:30,614 | INFO     | [job] control thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:30,686 | INFO     | [payload] failed_post thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:30,785 | INFO     | [job] validate thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:30,834 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:30,900 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:31,557 | INFO     | [data] copytool_out thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:34,528 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:35,256 | INFO     | [monitor] cgroup control has ended
[2025-10-21 10:20:58] 2025-10-21 08:20:39,086 | INFO     | job.realtimelogging is not enabled
[2025-10-21 10:20:58] 2025-10-21 08:20:40,091 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 10:20:58] 2025-10-21 08:20:40,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641520555840)>', '<ExcThread(monitor, started 139641030162176)>']
[2025-10-21 10:20:58] 2025-10-21 08:20:45,567 | INFO     | all workflow threads have been joined
[2025-10-21 10:20:58] 2025-10-21 08:20:45,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 10:20:58] 2025-10-21 08:20:45,567 | INFO     | traces error code: 0
[2025-10-21 10:20:58] 2025-10-21 08:20:45,567 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 10:20:58] 2025-10-21 08:20:58,685 | INFO     | PID=67045 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 10:20:58] 2025-10-21 08:20:58,685 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 10:20:58] 2025-10-21 08:20:58,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 10:20:58] 2025-10-21 08:20:58,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 10:20:58] 2025-10-21 08:20:58,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 10:20:58] 2025-10-21 08:20:58,686 | INFO     | [monitor] control thread has ended
[2025-10-21 10:20:58] 2025-10-21 08:20:58,731 [wrapper] ==== pilot stdout END ====
[2025-10-21 10:20:58] 2025-10-21 08:20:58,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 10:20:58] 2025-10-21 08:20:58,736 [wrapper] pilotpid: 67045
[2025-10-21 10:20:58] 2025-10-21 08:20:58,738 [wrapper] Pilot exit status: 0
[2025-10-21 10:20:58] 2025-10-21 08:20:58,745 [wrapper] pandaids: 6852955886
[2025-10-21 10:20:58] 2025-10-21 08:20:58,761 [wrapper] cleanup supervisor_pilot   85902 67046
[2025-10-21 10:20:58] 2025-10-21 08:20:58,763 [wrapper] Test setup, not cleaning
[2025-10-21 10:20:58] 2025-10-21 08:20:58,765 [wrapper] apfmon messages muted
[2025-10-21 10:20:58] 2025-10-21 08:20:58,768 [wrapper] ==== wrapper stdout END ====
[2025-10-21 10:20:58] 2025-10-21 08:20:58,770 [wrapper] ==== wrapper stderr END ====
[2025-10-21 10:20:58]  *** Error codes and diagnostics ***
[2025-10-21 10:20:58]     "exeErrorCode": 0,
[2025-10-21 10:20:58]     "exeErrorDiag": "",
[2025-10-21 10:20:58]     "pilotErrorCode": 0,
[2025-10-21 10:20:58]     "pilotErrorDiag": "",
[2025-10-21 10:20:58]  *** Listing of results directory ***
[2025-10-21 10:20:58] total 431644
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc    557409 Oct 21 01:48 pilot3.tar.gz
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc      5112 Oct 21 02:28 queuedata.json
[2025-10-21 10:20:58] -rwx------ 1 boinc boinc     36292 Oct 21 02:28 runpilot2-wrapper.sh
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc       100 Oct 21 08:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 10:20:58] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 08:52 run_atlas
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc       105 Oct 21 08:52 job.xml
[2025-10-21 10:20:58] -rw-r--r-- 2 boinc boinc 230149686 Oct 21 08:52 EVNT.46771634._002245.pool.root.1
[2025-10-21 10:20:58] -rw-r--r-- 2 boinc boinc    569678 Oct 21 08:52 input.tar.gz
[2025-10-21 10:20:58] -rw-r--r-- 2 boinc boinc     15120 Oct 21 08:52 start_atlas.sh
[2025-10-21 10:20:58] drwxrwx--x 2 boinc boinc      4096 Oct 21 08:52 shared
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc         0 Oct 21 08:52 boinc_setup_complete
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc      6448 Oct 21 08:52 init_data.xml
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc         0 Oct 21 08:52 boinc_lockfile
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc      2559 Oct 21 08:52 pandaJob.out
[2025-10-21 10:20:58] -rw------- 1 boinc boinc    978822 Oct 21 08:52 agis_schedconf.cvmfs.json
[2025-10-21 10:20:58] -rw------- 1 boinc boinc   1560740 Oct 21 08:52 agis_ddmendpoints.agis.ALL.json
[2025-10-21 10:20:58] drwx------ 5 boinc boinc      4096 Oct 21 08:52 pilot3
[2025-10-21 10:20:58] -rw------- 1 boinc boinc 205906761 Oct 21 10:20 HITS.46771637._057248.pool.root.1
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc       529 Oct 21 10:20 boinc_task_state.xml
[2025-10-21 10:20:58] -rw------- 1 boinc boinc      1031 Oct 21 10:20 memory_monitor_summary.json
[2025-10-21 10:20:58] -rw------- 1 boinc boinc    261624 Oct 21 10:20 log.46771637._057248.job.log.tgz.1
[2025-10-21 10:20:58] -rw------- 1 boinc boinc      7758 Oct 21 10:20 heartbeat.json
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc      8192 Oct 21 10:20 boinc_mmap_file
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc        27 Oct 21 10:20 wrapper_checkpoint.txt
[2025-10-21 10:20:58] -rw------- 1 boinc boinc       745 Oct 21 10:20 pilotlog.txt
[2025-10-21 10:20:58] -rw------- 1 boinc boinc        95 Oct 21 10:20 pilot_heartbeat.json
[2025-10-21 10:20:58] -rw------- 1 boinc boinc    768557 Oct 21 10:20 log.46771637._057248.job.log.1
[2025-10-21 10:20:58] -rw------- 1 boinc boinc       357 Oct 21 10:20 output.list
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc       620 Oct 21 10:20 runtime_log
[2025-10-21 10:20:58] -rw------- 1 boinc boinc   1044480 Oct 21 10:20 result.tar.gz
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc      8797 Oct 21 10:20 runtime_log.err
[2025-10-21 10:20:58] -rw------- 1 boinc boinc       662 Oct 21 10:20 oYFKDmPQFV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmER0NDmQWGROn.diag
[2025-10-21 10:20:58] -rw-r--r-- 1 boinc boinc     12527 Oct 21 10:20 stderr.txt
[2025-10-21 10:20:58] HITS file was successfully produced:
[2025-10-21 10:20:58] -rw------- 1 boinc boinc 205906761 Oct 21 10:20 shared/HITS.pool.root.1
[2025-10-21 10:20:58]  *** Contents of shared directory: ***
[2025-10-21 10:20:58] total 427444
[2025-10-21 10:20:58] -rw-r--r-- 2 boinc boinc 230149686 Oct 21 08:52 ATLAS.root_0
[2025-10-21 10:20:58] -rw-r--r-- 2 boinc boinc    569678 Oct 21 08:52 input.tar.gz
[2025-10-21 10:20:58] -rw-r--r-- 2 boinc boinc     15120 Oct 21 08:52 start_atlas.sh
[2025-10-21 10:20:58] -rw------- 1 boinc boinc 205906761 Oct 21 10:20 HITS.pool.root.1
[2025-10-21 10:20:58] -rw------- 1 boinc boinc   1044480 Oct 21 10:20 result.tar.gz
10:21:00 (63324): run_atlas exited; CPU time 15063.892847
10:21:00 (63324): called boinc_finish(0)

</stderr_txt>
]]>

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