Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:16:00 (2325547): wrapper (7.7.26015): starting
08:16:00 (2325547): wrapper: running run_atlas (--nthreads 4)
[2025-10-21 08:16:00] Arguments: --nthreads 4
[2025-10-21 08:16:00] Threads: 4
[2025-10-21 08:16:00] Checking for CVMFS
[2025-10-21 08:16:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 08:16:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 08:16:00] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 08:16:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 08:16:00] 2.9.2.0 2150638 485 73536 151947 3 57 23700912 36864000 0 130560 0 458063 99.991 16183 1575 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-21 08:16:00] CVMFS is ok
[2025-10-21 08:16:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-21 08:16:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-21 08:16:00] Further information can be found at the LHC@home message board.
[2025-10-21 08:16:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 08:16:00] Checking for apptainer binary...
[2025-10-21 08:16:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-21 08:16:00] Running /usr/bin/apptainer --version
[2025-10-21 08:16:00] apptainer version 1.4.1-1.1
[2025-10-21 08:16:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 08:16:00] thA315b
[2025-10-21 08:16:00] apptainer works
[2025-10-21 08:16:00] Set ATHENA_PROC_NUMBER=4
[2025-10-21 08:16:00] Set ATHENA_CORE_NUMBER=4
[2025-10-21 08:16:00] Starting ATLAS job with PandaID=6852948922
[2025-10-21 08:16:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 09:24:16]  *** The last 200 lines of the pilot log: ***
[2025-10-21 09:24:16] 2025-10-21 07:23:45,919 | INFO     | --- collectZombieJob: --- 10, [2335896]
[2025-10-21 09:24:16] 2025-10-21 07:23:45,919 | INFO     | zombie collector waiting for pid 2335896
[2025-10-21 09:24:16] 2025-10-21 07:23:45,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 09:24:16] 2025-10-21 07:23:45,919 | INFO     | collected zombie processes
[2025-10-21 09:24:16] 2025-10-21 07:23:45,919 | INFO     | will attempt to kill all subprocesses of pid=2335896
[2025-10-21 09:24:16] 2025-10-21 07:23:45,964 | INFO     | process IDs to be killed: [2335896] (in reverse order)
[2025-10-21 09:24:16] 2025-10-21 07:23:45,991 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 09:24:16] 2025-10-21 07:23:45,991 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 09:24:16] 2025-10-21 07:23:45,993 | INFO     | did not find any defunct processes belonging to 2335896
[2025-10-21 09:24:16] 2025-10-21 07:23:45,994 | INFO     | did not find any defunct processes belonging to 2335896
[2025-10-21 09:24:16] 2025-10-21 07:23:45,994 | INFO     | ready for new job
[2025-10-21 09:24:16] 2025-10-21 07:23:45,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 09:24:16] 2025-10-21 07:23:45,995 | INFO     | ***************************************
[2025-10-21 09:24:16] 2025-10-21 07:23:45,995 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 09:24:16] 2025-10-21 07:23:45,995 | INFO     | ***************************************
[2025-10-21 09:24:16] 2025-10-21 07:23:45,995 | INFO     | 
[2025-10-21 09:24:16] 2025-10-21 07:23:45,995 | INFO     | architecture information:
[2025-10-21 09:24:16] 2025-10-21 07:23:45,996 | INFO     | executing command: cat /etc/os-release
[2025-10-21 09:24:16] 2025-10-21 07:23:46,005 | INFO     | cat /etc/os-release:
[2025-10-21 09:24:16] NAME="CentOS Linux"
[2025-10-21 09:24:16] VERSION="7 (Core)"
[2025-10-21 09:24:16] ID="centos"
[2025-10-21 09:24:16] ID_LIKE="rhel fedora"
[2025-10-21 09:24:16] VERSION_ID="7"
[2025-10-21 09:24:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 09:24:16] ANSI_COLOR="0;31"
[2025-10-21 09:24:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 09:24:16] HOME_URL="https://www.centos.org/"
[2025-10-21 09:24:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 09:24:16] 
[2025-10-21 09:24:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 09:24:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 09:24:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 09:24:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 09:24:16] 
[2025-10-21 09:24:16] 2025-10-21 07:23:46,006 | INFO     | ***************************************
[2025-10-21 09:24:16] 2025-10-21 07:23:46,509 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-21 09:24:16] 2025-10-21 07:23:46,523 | INFO     | sufficient remaining disk space (335736209408 B)
[2025-10-21 09:24:16] 2025-10-21 07:23:46,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 09:24:16] 2025-10-21 07:23:46,523 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 09:24:16] 2025-10-21 07:23:46,523 | INFO     | update_server=False
[2025-10-21 09:24:16] 2025-10-21 07:23:46,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 09:24:16] 2025-10-21 07:23:46,523 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 09:24:16] 2025-10-21 07:23:46,523 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 09:24:16] 2025-10-21 07:23:46,523 | INFO     | aborting loop
[2025-10-21 09:24:16] 2025-10-21 07:23:46,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 09:24:16] 2025-10-21 07:23:46,707 | INFO     | all data control threads have been joined
[2025-10-21 09:24:16] 2025-10-21 07:23:47,515 | INFO     | all job control threads have been joined
[2025-10-21 09:24:16] 2025-10-21 07:23:47,529 | INFO     | [job] queue monitor thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:47,529 | INFO     | [job] retrieve thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:47,529 | INFO     | [job] job monitor thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:47,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 09:24:16] 2025-10-21 07:23:47,709 | INFO     | [data] control thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:47,840 | INFO     | [data] copytool_in thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:47,842 | INFO     | all payload control threads have been joined
[2025-10-21 09:24:16] 2025-10-21 07:23:47,933 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:48,039 | INFO     | [job] validate thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:48,081 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:48,147 | INFO     | [payload] failed_post thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:48,164 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:48,517 | INFO     | [job] control thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:48,530 | INFO     | [data] copytool_out thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:48,677 | INFO     | [payload] validate_post thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:48,847 | INFO     | [payload] control thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:51,563 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:23:57,053 | INFO     | job.realtimelogging is not enabled
[2025-10-21 09:24:16] 2025-10-21 07:23:58,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 09:24:16] 2025-10-21 07:24:10,865 | INFO     | [monitor] cgroup control has ended
[2025-10-21 09:24:16] 2025-10-21 07:24:11,820 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140596739200832)>', '<ExcThread(monitor, started 140596383557376)>']
[2025-10-21 09:24:16] 2025-10-21 07:24:16,506 | INFO     | PID=2329339 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-21 09:24:16] 2025-10-21 07:24:16,506 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 09:24:16] 2025-10-21 07:24:16,506 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 09:24:16] 2025-10-21 07:24:16,506 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 09:24:16] 2025-10-21 07:24:16,506 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 09:24:16] 2025-10-21 07:24:16,506 | INFO     | [monitor] control thread has ended
[2025-10-21 09:24:16] 2025-10-21 07:24:16,841 | INFO     | all workflow threads have been joined
[2025-10-21 09:24:16] 2025-10-21 07:24:16,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 09:24:16] 2025-10-21 07:24:16,841 | INFO     | traces error code: 0
[2025-10-21 09:24:16] 2025-10-21 07:24:16,841 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 09:24:16] 2025-10-21 07:24:16,893 [wrapper] ==== pilot stdout END ====
[2025-10-21 09:24:16] 2025-10-21 07:24:16,896 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 09:24:16] 2025-10-21 07:24:16,899 [wrapper] pilotpid: 2329339
[2025-10-21 09:24:16] 2025-10-21 07:24:16,901 [wrapper] Pilot exit status: 0
[2025-10-21 09:24:16] 2025-10-21 07:24:16,909 [wrapper] pandaids: 6852948922
[2025-10-21 09:24:16] 2025-10-21 07:24:16,927 [wrapper] cleanup supervisor_pilot 2345655 2329340
[2025-10-21 09:24:16] 2025-10-21 07:24:16,930 [wrapper] Test setup, not cleaning
[2025-10-21 09:24:16] 2025-10-21 07:24:16,932 [wrapper] apfmon messages muted
[2025-10-21 09:24:16] 2025-10-21 07:24:16,935 [wrapper] ==== wrapper stdout END ====
[2025-10-21 09:24:16] 2025-10-21 07:24:16,937 [wrapper] ==== wrapper stderr END ====
[2025-10-21 09:24:16]  *** Error codes and diagnostics ***
[2025-10-21 09:24:16]     "exeErrorCode": 0,
[2025-10-21 09:24:16]     "exeErrorDiag": "",
[2025-10-21 09:24:16]     "pilotErrorCode": 0,
[2025-10-21 09:24:16]     "pilotErrorDiag": "",
[2025-10-21 09:24:16]  *** Listing of results directory ***
[2025-10-21 09:24:16] total 429776
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc    557409 Oct 21 00:52 pilot3.tar.gz
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc      5112 Oct 21 01:04 queuedata.json
[2025-10-21 09:24:16] -rwx------ 1 boinc boinc     36292 Oct 21 01:04 runpilot2-wrapper.sh
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc       100 Oct 21 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 09:24:16] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 08:16 run_atlas
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc       105 Oct 21 08:16 job.xml
[2025-10-21 09:24:16] -rw-r--r-- 2 boinc boinc 226716737 Oct 21 08:16 EVNT.46771634._002066.pool.root.1
[2025-10-21 09:24:16] -rw-r--r-- 2 boinc boinc    569679 Oct 21 08:16 input.tar.gz
[2025-10-21 09:24:16] -rw-r--r-- 2 boinc boinc     15120 Oct 21 08:16 start_atlas.sh
[2025-10-21 09:24:16] drwxrwx--x 2 boinc boinc      4096 Oct 21 08:16 shared
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc         0 Oct 21 08:16 boinc_setup_complete
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc      6443 Oct 21 08:16 init_data.xml
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc         0 Oct 21 08:16 boinc_lockfile
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc      2559 Oct 21 08:16 pandaJob.out
[2025-10-21 09:24:16] -rw------- 1 boinc boinc    978830 Oct 21 08:16 agis_schedconf.cvmfs.json
[2025-10-21 09:24:16] -rw------- 1 boinc boinc   1560740 Oct 21 08:16 agis_ddmendpoints.agis.ALL.json
[2025-10-21 09:24:16] drwx------ 5 boinc boinc      4096 Oct 21 08:16 pilot3
[2025-10-21 09:24:16] -rw------- 1 boinc boinc 207758220 Oct 21 09:23 HITS.46771637._054821.pool.root.1
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc       529 Oct 21 09:23 boinc_task_state.xml
[2025-10-21 09:24:16] -rw------- 1 boinc boinc        95 Oct 21 09:23 pilot_heartbeat.json
[2025-10-21 09:24:16] -rw------- 1 boinc boinc      1018 Oct 21 09:23 memory_monitor_summary.json
[2025-10-21 09:24:16] -rw------- 1 boinc boinc    255002 Oct 21 09:23 log.46771637._054821.job.log.tgz.1
[2025-10-21 09:24:16] -rw------- 1 boinc boinc      7748 Oct 21 09:23 heartbeat.json
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc        27 Oct 21 09:23 wrapper_checkpoint.txt
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc      8192 Oct 21 09:23 boinc_mmap_file
[2025-10-21 09:24:16] -rw------- 1 boinc boinc      4824 Oct 21 09:24 pilotlog.txt
[2025-10-21 09:24:16] -rw------- 1 boinc boinc    606138 Oct 21 09:24 log.46771637._054821.job.log.1
[2025-10-21 09:24:16] -rw------- 1 boinc boinc       357 Oct 21 09:24 output.list
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc       620 Oct 21 09:24 runtime_log
[2025-10-21 09:24:16] -rw------- 1 boinc boinc    880640 Oct 21 09:24 result.tar.gz
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc      8782 Oct 21 09:24 runtime_log.err
[2025-10-21 09:24:16] -rw------- 1 boinc boinc       659 Oct 21 09:24 D8aKDmY6DV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmgBeMDmcfULRn.diag
[2025-10-21 09:24:16] -rw-r--r-- 1 boinc boinc     10706 Oct 21 09:24 stderr.txt
[2025-10-21 09:24:16] HITS file was successfully produced:
[2025-10-21 09:24:16] -rw------- 1 boinc boinc 207758220 Oct 21 09:23 shared/HITS.pool.root.1
[2025-10-21 09:24:16]  *** Contents of shared directory: ***
[2025-10-21 09:24:16] total 425740
[2025-10-21 09:24:16] -rw-r--r-- 2 boinc boinc 226716737 Oct 21 08:16 ATLAS.root_0
[2025-10-21 09:24:16] -rw-r--r-- 2 boinc boinc    569679 Oct 21 08:16 input.tar.gz
[2025-10-21 09:24:16] -rw-r--r-- 2 boinc boinc     15120 Oct 21 08:16 start_atlas.sh
[2025-10-21 09:24:16] -rw------- 1 boinc boinc 207758220 Oct 21 09:23 HITS.pool.root.1
[2025-10-21 09:24:16] -rw------- 1 boinc boinc    880640 Oct 21 09:24 result.tar.gz
09:24:18 (2325547): run_atlas exited; CPU time 15268.442819
09:24:18 (2325547): called boinc_finish(0)

</stderr_txt>
]]>

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