Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-22 09:24:06 (11736): vboxwrapper version 26210
2025-10-22 09:24:06 (11736): BOINC client version: 8.0.4
2025-10-22 09:24:06 (11736): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-22 09:24:07 (11736): Successfully copied 'init_data.xml' to the shared directory.
2025-10-22 09:24:07 (11736): Create VM. (boinc_62e3b819232335cf, slot#3)
2025-10-22 09:24:08 (11736): Setting Memory Size for VM. (4400MB)
2025-10-22 09:24:08 (11736): Setting CPU Count for VM. (4)
2025-10-22 09:24:08 (11736): Setting Chipset Options for VM.
2025-10-22 09:24:08 (11736): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-22 09:24:09 (11736): Setting Boot Options for VM.
2025-10-22 09:24:09 (11736): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-22 09:24:10 (11736): Enabling VM Network Access.
2025-10-22 09:24:10 (11736): Disabling USB Support for VM.
2025-10-22 09:24:10 (11736): Disabling COM Port Support for VM.
2025-10-22 09:24:10 (11736): Disabling LPT Port Support for VM.
2025-10-22 09:24:11 (11736): Disabling Audio Support for VM.
2025-10-22 09:24:11 (11736): Disabling Clipboard Support for VM.
2025-10-22 09:24:11 (11736): Disabling Drag and Drop Support for VM.
2025-10-22 09:24:12 (11736): Adding storage controller(s) to VM.
2025-10-22 09:24:12 (11736): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-22 09:24:14 (11736): Adding VirtualBox Guest Additions to VM.
2025-10-22 09:24:15 (11736): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-22 09:24:15 (11736): forwarding host port 49161 to guest port 80
2025-10-22 09:24:15 (11736): Enabling remote desktop for VM.
2025-10-22 09:24:15 (11736): Required extension pack not installed, remote desktop not enabled.
2025-10-22 09:24:16 (11736): Enabling shared directory for VM.
2025-10-22 09:24:16 (11736): Starting VM using VBoxManage interface. (boinc_62e3b819232335cf, slot#3)
2025-10-22 09:24:22 (11736): Successfully started VM. (PID = '1460')
2025-10-22 09:24:22 (11736): Reporting VM Process ID to BOINC.
2025-10-22 09:24:22 (11736): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-22 09:24:22 (11736): Guest Log: CPUID EDX: 0x178bfbff
2025-10-22 09:24:22 (11736): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-22 09:24:22 (11736): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-22 09:24:22 (11736): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-22 09:24:22 (11736): Detected: Web Application Enabled (http://localhost:49161)
2025-10-22 09:24:22 (11736): Preference change detected
2025-10-22 09:24:22 (11736): Setting CPU throttle for VM. (100%)
2025-10-22 09:24:23 (11736): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-22 09:24:24 (11736): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-22 09:24:24 (11736): Guest Log: BIOS: Booting from Hard Disk...
2025-10-22 09:24:27 (11736): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-22 09:24:27 (11736): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-22 09:24:27 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-22 09:24:28 (11736): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-22 09:24:37 (11736): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-22 09:24:37 (11736): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-22 09:24:46 (11736): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-22 09:24:46 (11736): Guest Log: 00:00:00.000142 main     Log opened 2025-10-22T09:24:44.524695000Z
2025-10-22 09:24:46 (11736): Guest Log: 00:00:00.000277 main     OS Product: Linux
2025-10-22 09:24:46 (11736): Guest Log: 00:00:00.000316 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-22 09:24:46 (11736): Guest Log: 00:00:00.000353 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-22 09:24:46 (11736): Guest Log: 00:00:00.000390 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-22 09:24:46 (11736): Guest Log: 00:00:00.000392 main     Process ID: 1303
2025-10-22 09:24:46 (11736): Guest Log: 00:00:00.000393 main     Package type: LINUX_64BITS_GENERIC
2025-10-22 09:24:46 (11736): Guest Log: 00:00:00.002256 main     5.2.32 r132073 started. Verbose level = 0
2025-10-22 09:24:46 (11736): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-22 09:24:46 (11736): Guest Log: [INFO] Mounting shared directory
2025-10-22 09:24:46 (11736): Guest Log: [INFO] Checking for init_data.xml
2025-10-22 09:24:50 (11736): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-22 09:24:50 (11736): Guest Log: [INFO] Detected branch: prod
2025-10-22 09:24:50 (11736): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-22 09:24:50 (11736): Guest Log: Copying input files
2025-10-22 09:24:52 (11736): Guest Log: Copied input files into RunAtlas.
2025-10-22 09:24:52 (11736): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-22 09:24:52 (11736): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-22 09:24:52 (11736): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-22 09:24:52 (11736): Guest Log: Further information can be found at the LHC@home message board.
2025-10-22 09:24:56 (11736): Guest Log: 00:00:10.017991 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 346 912 000ns (GuestNow=1 761 139 495 877 183 000 ns GuestLast=1 761 125 084 530 271 000 ns fSetTimeLastLoop=true )
2025-10-22 09:25:00 (11736): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-22 09:25:00 (11736): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-22 09:25:00 (11736): Guest Log: 2.6.3.0 1578 0 30160 151996 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-22 09:25:01 (11736): Guest Log: copied the webapp to /var/www
2025-10-22 09:25:01 (11736): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-22 09:25:01 (11736): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-22 09:25:02 (11736): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-22 09:25:02 (11736): Guest Log:  *** Starting ATLAS job. (PandaID=6852955906 taskID=46771637) ***
2025-10-22 11:08:16 (11736): Status Report: Elapsed Time: '6000.511616'
2025-10-22 11:08:16 (11736): Status Report: CPU Time: '21934.359375'
2025-10-22 12:53:08 (11736): Status Report: Elapsed Time: '12001.260777'
2025-10-22 12:53:08 (11736): Status Report: CPU Time: '46944.062500'
2025-10-22 13:51:51 (11736): VM state change detected. (old = 'running', new = 'paused')
2025-10-22 14:34:14 (11736): VM state change detected. (old = 'paused', new = 'running')
2025-10-22 14:34:17 (11736): Guest Log: 04:27:13.749903 timesync vgsvcTimeSyncWorker: Radical host time change: 2 547 844 000 000ns (HostNow=1 761 158 057 444 000 000 ns HostLast=1 761 155 509 600 000 000 ns)
2025-10-22 14:34:27 (11736): Guest Log: 04:27:23.750927 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 547 836 363 000ns (GuestNow=1 761 158 067 445 124 000 ns GuestLast=1 761 155 519 608 761 000 ns fSetTimeLastLoop=true )
2025-10-22 15:24:22 (11736): Status Report: Elapsed Time: '18001.561308'
2025-10-22 15:24:22 (11736): Status Report: CPU Time: '72758.609375'
2025-10-22 15:35:09 (11736): Guest Log:  *** Job finished ***
2025-10-22 15:35:09 (11736): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:34:53,190 | INFO     | all workflow threads have been joined
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:34:53,190 | INFO     | end of generic workflow (traces error code: 0)
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:34:53,191 | INFO     | traces error code: 0
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:34:53,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,534 | INFO     | PID=5975 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,535 | INFO     | found 0 job(s) in 20 queues
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,536 | INFO     | [monitor] control thread has ended
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,657 [wrapper] ==== pilot stdout END ====
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,662 [wrapper] ==== wrapper stdout RESUME ====
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,667 [wrapper] pilotpid: 5975
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,671 [wrapper] Pilot exit status: 0
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,773 [wrapper] pandaids: 6852955906
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,816 [wrapper] cleanup supervisor_pilot 22852 5976
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,823 [wrapper] Test setup, not cleaning
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,829 [wrapper] apfmon messages muted
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,834 [wrapper] ==== wrapper stdout END ====
2025-10-22 15:35:09 (11736): Guest Log: 2025-10-22 19:35:09,838 [wrapper] ==== wrapper stderr END ====
2025-10-22 15:35:09 (11736): Guest Log:  *** Error codes and diagnostics ***
2025-10-22 15:35:09 (11736): Guest Log:     "exeErrorCode": 0,
2025-10-22 15:35:09 (11736): Guest Log:     "exeErrorDiag": "",
2025-10-22 15:35:09 (11736): Guest Log:     "pilotErrorCode": 0,
2025-10-22 15:35:09 (11736): Guest Log:     "pilotErrorDiag": "",
2025-10-22 15:35:09 (11736): Guest Log:  *** Listing of results directory ***
2025-10-22 15:35:09 (11736): Guest Log: total 209624
2025-10-22 15:35:09 (11736): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 20 23:48 pilot3.tar.gz
2025-10-22 15:35:09 (11736): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 21 00:28 queuedata.json
2025-10-22 15:35:09 (11736): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 21 00:30 runpilot2-wrapper.sh
2025-10-22 15:35:09 (11736): Guest Log: -rwxr-xr-x. 1 atlas atlas      8945 Oct 22 13:24 init_data.xml
2025-10-22 15:35:09 (11736): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 22 13:24 input.tar.gz
2025-10-22 15:35:09 (11736): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 22 13:24 start_atlas.sh
2025-10-22 15:35:09 (11736): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 22 13:24 EVNT.46771634._002246.pool.root.1 -> /data/./ATLAS.root_0
2025-10-22 15:35:09 (11736): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 22 13:25 pandaJob.out
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas    977605 Oct 22 13:25 agis_schedconf.cvmfs.json
2025-10-22 15:35:09 (11736): Guest Log: drwx------. 5 atlas atlas      4096 Oct 22 13:26 pilot3
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas 204741089 Oct 22 19:33 HITS.46771637._057268.pool.root.1
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 22 19:34 memory_monitor_summary.json
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 22 19:34 agis_ddmendpoints.agis.ALL.json
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas    459282 Oct 22 19:34 log.46771637._057268.job.log.tgz.1
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas      7823 Oct 22 19:34 heartbeat.json
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas        97 Oct 22 19:35 pilot_heartbeat.json
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas       744 Oct 22 19:35 pilotlog.txt
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas   2578879 Oct 22 19:35 log.46771637._057268.job.log.1
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas       357 Oct 22 19:35 output.list
2025-10-22 15:35:09 (11736): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 22 19:35 runtime_log
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas   3061760 Oct 22 19:35 result.tar.gz
2025-10-22 15:35:09 (11736): Guest Log: -rw-r--r--. 1 atlas atlas      8649 Oct 22 19:35 runtime_log.err
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas       661 Oct 22 19:35 KreKDmCSFV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnR0NDm1goYPo.diag
2025-10-22 15:35:09 (11736): Guest Log: Looking for outputfile HITS.46771637._057268.pool.root.1
2025-10-22 15:35:09 (11736): Guest Log: HITS file was successfully produced
2025-10-22 15:35:09 (11736): Guest Log: -rw-------. 1 atlas atlas 204741089 Oct 22 19:33 /home/atlas/RunAtlas/HITS.46771637._057268.pool.root.1
2025-10-22 15:35:11 (11736): Guest Log: Successfully finished the ATLAS job!
2025-10-22 15:35:11 (11736): Guest Log: Copying the results back to the shared directory!
2025-10-22 15:35:11 (11736): Guest Log:  *** Contents of shared directory: ***
2025-10-22 15:35:11 (11736): Guest Log: total 424432
2025-10-22 15:35:11 (11736): Guest Log: -rwxrwxrwx. 1 root root 226207832 Oct 22 13:24 ATLAS.root_0
2025-10-22 15:35:11 (11736): Guest Log: -rwxrwxrwx. 1 root root 204741089 Oct 22 19:35 HITS.pool.root.1
2025-10-22 15:35:11 (11736): Guest Log: -rwxrwxrwx. 1 root root      8945 Oct 22 13:24 init_data.xml
2025-10-22 15:35:11 (11736): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 21 01:31 input.tar.gz
2025-10-22 15:35:11 (11736): Guest Log: -rwxrwxrwx. 1 root root   3061760 Oct 22 19:35 result.tar.gz
2025-10-22 15:35:11 (11736): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 21 01:31 start_atlas.sh
2025-10-22 15:35:11 (11736): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-22 15:35:11 (11736): VM Completion File Detected.
2025-10-22 15:35:11 (11736): Powering off VM.
2025-10-22 15:35:12 (11736): Successfully stopped VM.
2025-10-22 15:35:12 (11736): Deregistering VM. (boinc_62e3b819232335cf, slot#3)
2025-10-22 15:35:12 (11736): Removing network bandwidth throttle group from VM.
2025-10-22 15:35:12 (11736): Removing VM from VirtualBox.
2025-10-22 15:35:18 (11736): called boinc_finish(0)

</stderr_txt>
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