Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:27:33 (26916): wrapper (7.7.26015): starting
21:27:33 (26916): wrapper: running run_atlas (--nthreads 12)
[2025-10-20 21:27:33] Arguments: --nthreads 12
[2025-10-20 21:27:33] Threads: 12
[2025-10-20 21:27:33] Checking for CVMFS
[2025-10-20 21:27:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-20 21:27:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-20 21:27:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-20 21:27:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-20 21:27:33] 2.11.2.0 2945 235181 99996 151941 0 56 13360671 20275201 1 130560 2 116664014 99.984 13832647 13050 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-20 21:27:33] CVMFS is ok
[2025-10-20 21:27:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-20 21:27:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-20 21:27:33] Further information can be found at the LHC@home message board.
[2025-10-20 21:27:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-20 21:27:33] Checking for apptainer binary...
[2025-10-20 21:27:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-20 21:27:33] Running /usr/bin/apptainer --version
[2025-10-20 21:27:33] apptainer version 1.3.2-1.el7
[2025-10-20 21:27:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-20 21:27:35] c-205-2.aglt2.org
[2025-10-20 21:27:35] apptainer works
[2025-10-20 21:27:35] Set ATHENA_PROC_NUMBER=12
[2025-10-20 21:27:35] Set ATHENA_CORE_NUMBER=12
[2025-10-20 21:27:35] Starting ATLAS job with PandaID=6852948594
[2025-10-20 21:27:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-20 22:47:19]  *** The last 200 lines of the pilot log: ***
[2025-10-20 22:47:19]  protocol_id=None
[2025-10-20 22:47:19]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-20 22:47:19]  replicas=None
[2025-10-20 22:47:19]  scope=mc23_13p6TeV
[2025-10-20 22:47:19]  status=None
[2025-10-20 22:47:19]  status_code=0
[2025-10-20 22:47:19]  storage_token=
[2025-10-20 22:47:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6852948594/log.46771637._054592.job.log.tgz.1
[2025-10-20 22:47:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/65/29/log.46771637._054592.job.log.tgz.1
[2025-10-20 22:47:19]  workdir=None
[2025-10-20 22:47:19] ]
[2025-10-20 22:47:19] 2025-10-21 02:46:40,048 | INFO     | transferring file log.46771637._054592.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6852948594/log.46771637._054592.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-20 22:47:19] 2025-10-21 02:46:40,048 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6852948594/log.46771637._054592.job.log.tgz.1 /tmp/boinchome/slots/0/log.46771637._054592.job
[2025-10-20 22:47:19] 2025-10-21 02:46:40,070 | INFO     | adding to output.list: log.46771637._054592.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/65/29/log.46771637._054592.job.log.tg
[2025-10-20 22:47:19] 2025-10-21 02:46:40,071 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-20 22:47:19] 2025-10-21 02:46:40,071 | INFO     | summary of transferred files:
[2025-10-20 22:47:19] 2025-10-21 02:46:40,072 | INFO     |  -- lfn=log.46771637._054592.job.log.tgz.1, status_code=0, status=transferred
[2025-10-20 22:47:19] 2025-10-21 02:46:40,072 | INFO     | stage-out finished correctly
[2025-10-20 22:47:19] 2025-10-21 02:46:40,158 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-20 22:47:19] 2025-10-21 02:46:40,275 | INFO     | number of running child processes to parent process 4703: 1
[2025-10-20 22:47:19] 2025-10-21 02:46:40,275 | INFO     | maximum number of monitored processes: 6
[2025-10-20 22:47:19] 2025-10-21 02:46:41,981 | INFO     | job 6852948594 has state=finished
[2025-10-20 22:47:19] 2025-10-21 02:46:41,982 | INFO     | preparing for final server update for job 6852948594 in state='finished'
[2025-10-20 22:47:19] 2025-10-21 02:46:41,982 | INFO     | this job has now completed (state=finished)
[2025-10-20 22:47:19] 2025-10-21 02:46:41,982 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-20 22:47:19] 2025-10-21 02:46:41,983 | INFO     | log transfer has been attempted: DONE
[2025-10-20 22:47:19] 2025-10-21 02:46:41,983 | INFO     | job 6852948594 has finished - writing final server update
[2025-10-20 22:47:19] 2025-10-21 02:46:41,983 | INFO     | total number of processed events: 400 (read)
[2025-10-20 22:47:19] 2025-10-21 02:46:41,984 | INFO     | executing command: lscpu
[2025-10-20 22:47:19] 2025-10-21 02:46:42,003 | INFO     | time since job start (4732s) is within the limit (172800.0s)
[2025-10-20 22:47:19] 2025-10-21 02:46:42,011 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-20 22:47:19] 2025-10-21 02:46:42,778 | INFO     | monitor loop #352: job 0:6852948594 is in state 'finished'
[2025-10-20 22:47:19] 2025-10-21 02:46:42,778 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-20 22:47:19] 2025-10-21 02:46:44,009 | INFO     | time since job start (4734s) is within the limit (172800.0s)
[2025-10-20 22:47:19] 2025-10-21 02:46:45,288 | INFO     | monitor loop #353: job 0:6852948594 is in state 'finished'
[2025-10-20 22:47:19] 2025-10-21 02:46:45,288 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-20 22:47:19] 2025-10-21 02:46:46,014 | INFO     | time since job start (4736s) is within the limit (172800.0s)
[2025-10-20 22:47:19] 2025-10-21 02:46:46,753 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-20 22:47:19] 2025-10-21 02:46:46,757 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-20 22:47:19] 2025-10-21 02:46:46,759 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6852948594/memory_monitor_summary.json (trf name=prmon)
[2025-10-20 22:47:19] 2025-10-21 02:46:46,760 | INFO     | extracted standard info from prmon json
[2025-10-20 22:47:19] 2025-10-21 02:46:46,760 | INFO     | extracted standard memory fields from prmon json
[2025-10-20 22:47:19] 2025-10-21 02:46:46,760 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-20 22:47:19] 2025-10-21 02:46:46,760 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-20 22:47:19] 2025-10-21 02:46:46,761 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-20 22:47:19] 2025-10-21 02:46:46,762 | INFO     | fitting pss+swap vs Time
[2025-10-20 22:47:19] 2025-10-21 02:46:46,762 | INFO     | sum of square deviations: 106336877.5
[2025-10-20 22:47:19] 2025-10-21 02:46:46,763 | INFO     | sum of deviations: -9838716108.0
[2025-10-20 22:47:19] 2025-10-21 02:46:46,763 | INFO     | mean x: 1761012508.5
[2025-10-20 22:47:19] 2025-10-21 02:46:46,763 | INFO     | mean y: 2844327.8
[2025-10-20 22:47:19] 2025-10-21 02:46:46,763 | INFO     | -- intersect: 162938812931.62173
[2025-10-20 22:47:19] 2025-10-21 02:46:46,763 | INFO     | intersect: 162938812931.62173
[2025-10-20 22:47:19] 2025-10-21 02:46:46,763 | INFO     | chi2: 0.05893039804104165
[2025-10-20 22:47:19] 2025-10-21 02:46:46,764 | INFO     | -- intersect: 162938812931.62173
[2025-10-20 22:47:19] 2025-10-21 02:46:46,764 | INFO     | current memory leak: -92.52 B/s (using 70 data points, chi2=0.06)
[2025-10-20 22:47:19] 2025-10-21 02:46:46,764 | INFO     | could have reported an average CPU frequency of 2039 MHz (6 samples)
[2025-10-20 22:47:19] 2025-10-21 02:46:46,764 | INFO     | ..............................
[2025-10-20 22:47:19] 2025-10-21 02:46:46,764 | INFO     | . Timing measurements:
[2025-10-20 22:47:19] 2025-10-21 02:46:46,764 | INFO     | . get job = 0 s
[2025-10-20 22:47:19] 2025-10-21 02:46:46,764 | INFO     | . initial setup = 2 s
[2025-10-20 22:47:19] 2025-10-21 02:46:46,765 | INFO     | . payload setup = 7 s
[2025-10-20 22:47:19] 2025-10-21 02:46:46,765 | INFO     | . stage-in = 0 s
[2025-10-20 22:47:19] 2025-10-21 02:46:46,765 | INFO     | . payload execution = 4701 s
[2025-10-20 22:47:19] 2025-10-21 02:46:46,765 | INFO     | . stage-out = 0 s
[2025-10-20 22:47:19] 2025-10-21 02:46:46,765 | INFO     | . log creation = 0 s
[2025-10-20 22:47:19] 2025-10-21 02:46:46,765 | INFO     | ..............................
[2025-10-20 22:47:19] 2025-10-21 02:46:46,848 | INFO     | 
[2025-10-20 22:47:19] 2025-10-21 02:46:46,848 | INFO     | job summary report
[2025-10-20 22:47:19] 2025-10-21 02:46:46,848 | INFO     | --------------------------------------------------
[2025-10-20 22:47:19] 2025-10-21 02:46:46,849 | INFO     | PanDA job id: 6852948594
[2025-10-20 22:47:19] 2025-10-21 02:46:46,849 | INFO     | task id: 46771637
[2025-10-20 22:47:19] 2025-10-21 02:46:46,849 | INFO     | errors: (none)
[2025-10-20 22:47:19] 2025-10-21 02:46:46,849 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-20 22:47:19] 2025-10-21 02:46:46,849 | INFO     | pilot state: finished 
[2025-10-20 22:47:19] 2025-10-21 02:46:46,849 | INFO     | transexitcode: 0
[2025-10-20 22:47:19] 2025-10-21 02:46:46,850 | INFO     | exeerrorcode: 0
[2025-10-20 22:47:19] 2025-10-21 02:46:46,850 | INFO     | exeerrordiag: 
[2025-10-20 22:47:19] 2025-10-21 02:46:46,850 | INFO     | exitcode: 0
[2025-10-20 22:47:19] 2025-10-21 02:46:46,850 | INFO     | exitmsg: OK
[2025-10-20 22:47:19] 2025-10-21 02:46:46,850 | INFO     | cpuconsumptiontime: 51477 s
[2025-10-20 22:47:19] 2025-10-21 02:46:46,850 | INFO     | nevents: 400
[2025-10-20 22:47:19] 2025-10-21 02:46:46,850 | INFO     | neventsw: 0
[2025-10-20 22:47:19] 2025-10-21 02:46:46,851 | INFO     | pid: 4703
[2025-10-20 22:47:19] 2025-10-21 02:46:46,851 | INFO     | pgrp: 4703
[2025-10-20 22:47:19] 2025-10-21 02:46:46,851 | INFO     | corecount: 12
[2025-10-20 22:47:19] 2025-10-21 02:46:46,851 | INFO     | event service: False
[2025-10-20 22:47:19] 2025-10-21 02:46:46,851 | INFO     | sizes: {0: 2348931, 5: 2349193, 11: 2349249, 4712: 2375412, 4713: 2384466, 4720: 2384604}
[2025-10-20 22:47:19] 2025-10-21 02:46:46,851 | INFO     | --------------------------------------------------
[2025-10-20 22:47:19] 2025-10-21 02:46:46,852 | INFO     | 
[2025-10-20 22:47:19] 2025-10-21 02:46:46,852 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-20 22:47:19] 2025-10-21 02:46:46,875 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,876 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,876 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,876 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,876 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,876 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,876 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,877 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,877 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,877 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,877 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,878 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,878 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-20 22:47:19] 2025-10-21 02:46:46,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,878 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-20 22:47:19] 2025-10-21 02:46:46,879 | INFO     | job 6852948594 has completed (purged errors)
[2025-10-20 22:47:19] 2025-10-21 02:46:46,879 | INFO     | overall cleanup function is called
[2025-10-20 22:47:19] 2025-10-21 02:46:47,887 | INFO     | --- collectZombieJob: --- 10, [4703]
[2025-10-20 22:47:19] 2025-10-21 02:46:47,887 | INFO     | zombie collector waiting for pid 4703
[2025-10-20 22:47:19] 2025-10-21 02:46:47,894 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-20 22:47:19] 2025-10-21 02:46:47,894 | INFO     | collected zombie processes
[2025-10-20 22:47:19] 2025-10-21 02:46:47,895 | INFO     | will attempt to kill all subprocesses of pid=4703
[2025-10-20 22:47:19] 2025-10-21 02:46:47,986 | INFO     | process IDs to be killed: [4703] (in reverse order)
[2025-10-20 22:47:19] 2025-10-21 02:46:48,046 | WARNING  | found no corresponding commands to process id(s)
[2025-10-20 22:47:19] 2025-10-21 02:46:48,046 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-20 22:47:19] 2025-10-21 02:46:48,050 | INFO     | did not find any defunct processes belonging to 4703
[2025-10-20 22:47:19] 2025-10-21 02:46:48,052 | INFO     | did not find any defunct processes belonging to 4703
[2025-10-20 22:47:19] 2025-10-21 02:46:48,052 | INFO     | ready for new job
[2025-10-20 22:47:19] 2025-10-21 02:46:48,053 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-20 22:47:19] 2025-10-21 02:46:48,054 | INFO     | ***************************************
[2025-10-20 22:47:19] 2025-10-21 02:46:48,054 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-20 22:47:19] 2025-10-21 02:46:48,054 | INFO     | ***************************************
[2025-10-20 22:47:19] 2025-10-21 02:46:48,054 | INFO     | 
[2025-10-20 22:47:19] 2025-10-21 02:46:48,055 | INFO     | architecture information:
[2025-10-20 22:47:19] 2025-10-21 02:46:48,055 | INFO     | executing command: cat /etc/os-release
[2025-10-20 22:47:19] 2025-10-21 02:46:48,070 | INFO     | cat /etc/os-release:
[2025-10-20 22:47:19] NAME="CentOS Linux"
[2025-10-20 22:47:19] VERSION="7 (Core)"
[2025-10-20 22:47:19] ID="centos"
[2025-10-20 22:47:19] ID_LIKE="rhel fedora"
[2025-10-20 22:47:19] VERSION_ID="7"
[2025-10-20 22:47:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-20 22:47:19] ANSI_COLOR="0;31"
[2025-10-20 22:47:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-20 22:47:19] HOME_URL="https://www.centos.org/"
[2025-10-20 22:47:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-20 22:47:19] 
[2025-10-20 22:47:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-20 22:47:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-20 22:47:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-20 22:47:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-20 22:47:19] 
[2025-10-20 22:47:19] 2025-10-21 02:46:48,070 | INFO     | ***************************************
[2025-10-20 22:47:19] 2025-10-21 02:46:48,573 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-20 22:47:19] 2025-10-21 02:46:48,590 | INFO     | sufficient remaining disk space (29397876736 B)
[2025-10-20 22:47:19] 2025-10-21 02:46:48,591 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-20 22:47:19] 2025-10-21 02:46:48,591 | INFO     | current server update state: UPDATING_FINAL
[2025-10-20 22:47:19] 2025-10-21 02:46:48,591 | INFO     | update_server=False
[2025-10-20 22:47:19] 2025-10-21 02:46:48,591 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-20 22:47:19] 2025-10-21 02:46:48,592 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-20 22:47:19] 2025-10-21 02:46:48,592 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-20 22:47:19] 2025-10-21 02:46:48,696 | INFO     | all payload control threads have been joined
[2025-10-20 22:47:19] 2025-10-21 02:46:48,756 | INFO     | all data control threads have been joined
[2025-10-20 22:47:19] 2025-10-21 02:46:48,796 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-20 22:47:19] 2025-10-21 02:46:48,796 | INFO     | aborting loop
[2025-10-20 22:47:19] 2025-10-21 02:46:49,597 | INFO     | [job] queue monitor thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:49,597 | INFO     | [job] retrieve thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:49,643 | INFO     | [payload] failed_post thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:49,701 | INFO     | [payload] control thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:49,761 | INFO     | [data] control thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:49,802 | INFO     | [job] job monitor thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:49,837 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:49,839 | INFO     | all job control threads have been joined
[2025-10-20 22:47:19] 2025-10-21 02:46:49,909 | INFO     | [payload] validate_post thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:49,915 | INFO     | [job] validate thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:50,274 | INFO     | [job] create_data_payload thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:50,280 | INFO     | [payload] validate_pre thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:50,431 | INFO     | [payload] execute_payloads thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:50,598 | INFO     | [data] copytool_out thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:50,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-20 22:47:19] 2025-10-21 02:46:50,844 | INFO     | [job] control thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:50,998 | INFO     | [data] copytool_in thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:54,756 | INFO     | [data] queue_monitor thread has finished
[2025-10-20 22:47:19] 2025-10-21 02:46:57,503 | INFO     | [monitor] cgroup control has ended
[2025-10-20 22:47:19] 2025-10-21 02:46:58,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140374602274624)>', '<ExcThread(monitor, started 140373850564352)>']
[2025-10-20 22:47:19] 2025-10-21 02:47:03,858 | INFO     | all workflow threads have been joined
[2025-10-20 22:47:19] 2025-10-21 02:47:03,859 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-20 22:47:19] 2025-10-21 02:47:03,859 | INFO     | traces error code: 0
[2025-10-20 22:47:19] 2025-10-21 02:47:03,859 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-20 22:47:19] 2025-10-21 02:47:19,215 | INFO     | PID=30586 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-20 22:47:19] 2025-10-21 02:47:19,216 | INFO     | found 0 job(s) in 20 queues
[2025-10-20 22:47:19] 2025-10-21 02:47:19,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-20 22:47:19] 2025-10-21 02:47:19,216 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-20 22:47:19] 2025-10-21 02:47:19,216 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-20 22:47:19] 2025-10-21 02:47:19,216 | INFO     | [monitor] control thread has ended
[2025-10-20 22:47:19] 2025-10-21 02:47:19,295 [wrapper] ==== pilot stdout END ====
[2025-10-20 22:47:19] 2025-10-21 02:47:19,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-20 22:47:19] 2025-10-21 02:47:19,303 [wrapper] pilotpid: 30586
[2025-10-20 22:47:19] 2025-10-21 02:47:19,307 [wrapper] Pilot exit status: 0
[2025-10-20 22:47:19] 2025-10-21 02:47:19,322 [wrapper] pandaids: 6852948594
[2025-10-20 22:47:19] 2025-10-21 02:47:19,362 [wrapper] cleanup supervisor_pilot 22112 30587
[2025-10-20 22:47:19] 2025-10-21 02:47:19,366 [wrapper] Test setup, not cleaning
[2025-10-20 22:47:19] 2025-10-21 02:47:19,370 [wrapper] apfmon messages muted
[2025-10-20 22:47:19] 2025-10-21 02:47:19,374 [wrapper] ==== wrapper stdout END ====
[2025-10-20 22:47:19] 2025-10-21 02:47:19,378 [wrapper] ==== wrapper stderr END ====
[2025-10-20 22:47:19]  *** Error codes and diagnostics ***
[2025-10-20 22:47:19]     "exeErrorCode": 0,
[2025-10-20 22:47:19]     "exeErrorDiag": "",
[2025-10-20 22:47:19]     "pilotErrorCode": 0,
[2025-10-20 22:47:19]     "pilotErrorDiag": "",
[2025-10-20 22:47:19]  *** Listing of results directory ***
[2025-10-20 22:47:19] total 433352
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas    557409 Oct 20 18:52 pilot3.tar.gz
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas      5112 Oct 20 18:58 queuedata.json
[2025-10-20 22:47:19] -rwx------ 1 boincer umatlas     36292 Oct 20 18:58 runpilot2-wrapper.sh
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas       100 Oct 20 21:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-20 22:47:19] -rwxr-xr-x 1 boincer umatlas      7986 Oct 20 21:27 run_atlas
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas       105 Oct 20 21:27 job.xml
[2025-10-20 22:47:19] -rw-r--r-- 2 boincer umatlas 229986539 Oct 20 21:27 EVNT.46771634._002057.pool.root.1
[2025-10-20 22:47:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 20 21:27 start_atlas.sh
[2025-10-20 22:47:19] drwxrwx--x 2 boincer umatlas      4096 Oct 20 21:27 shared
[2025-10-20 22:47:19] -rw-r--r-- 2 boincer umatlas    569676 Oct 20 21:27 input.tar.gz
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas         0 Oct 20 21:27 boinc_lockfile
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas      2560 Oct 20 21:27 pandaJob.out
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas    978830 Oct 20 21:27 agis_schedconf.cvmfs.json
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas   1560740 Oct 20 21:27 agis_ddmendpoints.agis.ALL.json
[2025-10-20 22:47:19] drwx------ 5 boincer umatlas      4096 Oct 20 21:27 pilot3
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas      5952 Oct 20 22:37 init_data.xml
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas 207733439 Oct 20 22:46 HITS.46771637._054592.pool.root.1
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas       529 Oct 20 22:46 boinc_task_state.xml
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas      1050 Oct 20 22:46 memory_monitor_summary.json
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas    381172 Oct 20 22:46 log.46771637._054592.job.log.tgz.1
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas      7856 Oct 20 22:46 heartbeat.json
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas        27 Oct 20 22:46 wrapper_checkpoint.txt
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas      8192 Oct 20 22:46 boinc_mmap_file
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas        95 Oct 20 22:47 pilot_heartbeat.json
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas       745 Oct 20 22:47 pilotlog.txt
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas    683390 Oct 20 22:47 log.46771637._054592.job.log.1
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas       357 Oct 20 22:47 output.list
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas       620 Oct 20 22:47 runtime_log
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas   1085440 Oct 20 22:47 result.tar.gz
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas      8700 Oct 20 22:47 runtime_log.err
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas       658 Oct 20 22:47 5XNNDmX0DV8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6yzNDmoZAAqn.diag
[2025-10-20 22:47:19] -rw-r--r-- 1 boincer umatlas     21724 Oct 20 22:47 stderr.txt
[2025-10-20 22:47:19] HITS file was successfully produced:
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas 207733439 Oct 20 22:46 shared/HITS.pool.root.1
[2025-10-20 22:47:19]  *** Contents of shared directory: ***
[2025-10-20 22:47:19] total 429108
[2025-10-20 22:47:19] -rw-r--r-- 2 boincer umatlas 229986539 Oct 20 21:27 ATLAS.root_0
[2025-10-20 22:47:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 20 21:27 start_atlas.sh
[2025-10-20 22:47:19] -rw-r--r-- 2 boincer umatlas    569676 Oct 20 21:27 input.tar.gz
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas 207733439 Oct 20 22:46 HITS.pool.root.1
[2025-10-20 22:47:19] -rw------- 1 boincer umatlas   1085440 Oct 20 22:47 result.tar.gz
22:47:20 (26916): run_atlas exited; CPU time 51463.639105
22:47:20 (26916): called boinc_finish(0)

</stderr_txt>
]]>

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