Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
22:13:28 (66554): wrapper (7.7.26015): starting
22:13:28 (66554): wrapper: running run_atlas (--nthreads 6)
[2025-10-21 22:13:28] Arguments: --nthreads 6
[2025-10-21 22:13:28] Threads: 6
[2025-10-21 22:13:28] Checking for CVMFS
[2025-10-21 22:13:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-21 22:13:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-21 22:13:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-21 22:13:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-21 22:13:28] 2.11.5.0 4381 13 45844 151969 2 188 3654720 4194305 2696 130560 0 177855 99.990 2791 860 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-10-21 22:13:28] CVMFS is ok
[2025-10-21 22:13:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-21 22:13:28] Checking for apptainer binary...
[2025-10-21 22:13:28] apptainer is not installed, using version from CVMFS
[2025-10-21 22:13:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-21 22:13:28] boinc-b450f
[2025-10-21 22:13:28] apptainer works
[2025-10-21 22:13:28] Set ATHENA_PROC_NUMBER=6
[2025-10-21 22:13:28] Set ATHENA_CORE_NUMBER=6
[2025-10-21 22:13:28] Starting ATLAS job with PandaID=6852947544
[2025-10-21 22:13:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-21 23:48:56]  *** The last 200 lines of the pilot log: ***
[2025-10-21 23:48:56]  storage_token=
[2025-10-21 23:48:56]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6852947544/log.46771637._053785.job.log.tgz.1
[2025-10-21 23:48:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/4e/log.46771637._053785.job.log.tgz.1
[2025-10-21 23:48:56]  workdir=None
[2025-10-21 23:48:56] ]
[2025-10-21 23:48:56] 2025-10-21 21:48:04,954 | INFO     | transferring file log.46771637._053785.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6852947544/log.46771637._053785.job.log.tgz.1 to /var/lib/boinc
[2025-10-21 23:48:56] 2025-10-21 21:48:04,954 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6852947544/log.46771637._053785.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.467716
[2025-10-21 23:48:56] 2025-10-21 21:48:04,964 | INFO     | adding to output.list: log.46771637._053785.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/94/4e/log.46771637._053785.job.log.tg
[2025-10-21 23:48:56] 2025-10-21 21:48:04,965 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-21 23:48:56] 2025-10-21 21:48:04,965 | INFO     | summary of transferred files:
[2025-10-21 23:48:56] 2025-10-21 21:48:04,965 | INFO     |  -- lfn=log.46771637._053785.job.log.tgz.1, status_code=0, status=transferred
[2025-10-21 23:48:56] 2025-10-21 21:48:04,965 | INFO     | stage-out finished correctly
[2025-10-21 23:48:56] 2025-10-21 21:48:05,065 | INFO     | number of running child processes to parent process 111723: 1
[2025-10-21 23:48:56] 2025-10-21 21:48:05,065 | INFO     | maximum number of monitored processes: 6
[2025-10-21 23:48:56] 2025-10-21 21:48:06,522 | INFO     | time since job start (5665s) is within the limit (172800.0s)
[2025-10-21 23:48:56] 2025-10-21 21:48:07,568 | INFO     | monitor loop #417: job 0:6852947544 is in state 'finished'
[2025-10-21 23:48:56] 2025-10-21 21:48:07,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 23:48:56] 2025-10-21 21:48:08,436 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-21 23:48:56] 2025-10-21 21:48:08,528 | INFO     | time since job start (5667s) is within the limit (172800.0s)
[2025-10-21 23:48:56] 2025-10-21 21:48:10,071 | INFO     | monitor loop #418: job 0:6852947544 is in state 'finished'
[2025-10-21 23:48:56] 2025-10-21 21:48:10,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 23:48:56] 2025-10-21 21:48:10,532 | INFO     | time since job start (5669s) is within the limit (172800.0s)
[2025-10-21 23:48:56] 2025-10-21 21:48:11,498 | INFO     | job 6852947544 has state=finished
[2025-10-21 23:48:56] 2025-10-21 21:48:11,498 | INFO     | preparing for final server update for job 6852947544 in state='finished'
[2025-10-21 23:48:56] 2025-10-21 21:48:11,499 | INFO     | this job has now completed (state=finished)
[2025-10-21 23:48:56] 2025-10-21 21:48:11,499 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-21 23:48:56] 2025-10-21 21:48:11,499 | INFO     | log transfer has been attempted: DONE
[2025-10-21 23:48:56] 2025-10-21 21:48:11,499 | INFO     | job 6852947544 has finished - writing final server update
[2025-10-21 23:48:56] 2025-10-21 21:48:11,499 | INFO     | total number of processed events: 400 (read)
[2025-10-21 23:48:56] 2025-10-21 21:48:11,499 | INFO     | executing command: lscpu
[2025-10-21 23:48:56] 2025-10-21 21:48:11,509 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-21 23:48:56] 2025-10-21 21:48:12,537 | INFO     | time since job start (5671s) is within the limit (172800.0s)
[2025-10-21 23:48:56] 2025-10-21 21:48:12,571 | INFO     | monitor loop #419: job 0:6852947544 is in state 'finished'
[2025-10-21 23:48:56] 2025-10-21 21:48:12,572 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-21 23:48:56] 2025-10-21 21:48:13,005 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-21 23:48:56] 2025-10-21 21:48:13,007 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4039.3494583333336
[2025-10-21 23:48:56] 2025-10-21 21:48:13,008 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6852947544/memory_monitor_summary.json (trf name=prmon)
[2025-10-21 23:48:56] 2025-10-21 21:48:13,008 | INFO     | extracted standard info from prmon json
[2025-10-21 23:48:56] 2025-10-21 21:48:13,009 | INFO     | extracted standard memory fields from prmon json
[2025-10-21 23:48:56] 2025-10-21 21:48:13,009 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-21 23:48:56] 2025-10-21 21:48:13,009 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-21 23:48:56] 2025-10-21 21:48:13,009 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | fitting pss+swap vs Time
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | sum of square deviations: 197203697.5
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | sum of deviations: -320354310.00000006
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | mean x: 1761080534.5
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | mean y: 2426879.581395349
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | -- intersect: 2863274554.5301814
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | intersect: 2863274554.5301814
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | chi2: 0.0019376148535793147
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | -- intersect: 2863274554.5301814
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | current memory leak: -1.62 B/s (using 86 data points, chi2=0.00)
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | could have reported an average CPU frequency of 4003 MHz (7 samples)
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | ..............................
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | . Timing measurements:
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | . get job = 0 s
[2025-10-21 23:48:56] 2025-10-21 21:48:13,010 | INFO     | . initial setup = 2 s
[2025-10-21 23:48:56] 2025-10-21 21:48:13,011 | INFO     | . payload setup = 1 s
[2025-10-21 23:48:56] 2025-10-21 21:48:13,011 | INFO     | . stage-in = 0 s
[2025-10-21 23:48:56] 2025-10-21 21:48:13,011 | INFO     | . payload execution = 5644 s
[2025-10-21 23:48:56] 2025-10-21 21:48:13,011 | INFO     | . stage-out = 0 s
[2025-10-21 23:48:56] 2025-10-21 21:48:13,011 | INFO     | . log creation = 0 s
[2025-10-21 23:48:56] 2025-10-21 21:48:13,011 | INFO     | ..............................
[2025-10-21 23:48:56] 2025-10-21 21:48:13,051 | INFO     | 
[2025-10-21 23:48:56] 2025-10-21 21:48:13,051 | INFO     | job summary report
[2025-10-21 23:48:56] 2025-10-21 21:48:13,051 | INFO     | --------------------------------------------------
[2025-10-21 23:48:56] 2025-10-21 21:48:13,051 | INFO     | PanDA job id: 6852947544
[2025-10-21 23:48:56] 2025-10-21 21:48:13,051 | INFO     | task id: 46771637
[2025-10-21 23:48:56] 2025-10-21 21:48:13,051 | INFO     | errors: (none)
[2025-10-21 23:48:56] 2025-10-21 21:48:13,051 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | pilot state: finished 
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | transexitcode: 0
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | exeerrorcode: 0
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | exeerrordiag: 
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | exitcode: 0
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | exitmsg: OK
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | cpuconsumptiontime: 32608 s
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | nevents: 400
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | neventsw: 0
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | pid: 111723
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | pgrp: 111723
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | corecount: 6
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | event service: False
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | sizes: {0: 2348709, 1: 2348964, 3: 2349226, 11: 2349254, 5649: 2375998, 5651: 2385010, 5655: 2385194, 5659: 2385388}
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | --------------------------------------------------
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | 
[2025-10-21 23:48:56] 2025-10-21 21:48:13,052 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,060 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,060 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-21 23:48:56] 2025-10-21 21:48:13,060 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,060 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-21 23:48:56] 2025-10-21 21:48:13,060 | INFO     | job 6852947544 has completed (purged errors)
[2025-10-21 23:48:56] 2025-10-21 21:48:13,060 | INFO     | overall cleanup function is called
[2025-10-21 23:48:56] 2025-10-21 21:48:14,061 | INFO     | --- collectZombieJob: --- 10, [111723]
[2025-10-21 23:48:56] 2025-10-21 21:48:14,062 | INFO     | zombie collector waiting for pid 111723
[2025-10-21 23:48:56] 2025-10-21 21:48:14,062 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-21 23:48:56] 2025-10-21 21:48:14,062 | INFO     | collected zombie processes
[2025-10-21 23:48:56] 2025-10-21 21:48:14,062 | INFO     | will attempt to kill all subprocesses of pid=111723
[2025-10-21 23:48:56] 2025-10-21 21:48:14,120 | INFO     | process IDs to be killed: [111723] (in reverse order)
[2025-10-21 23:48:56] 2025-10-21 21:48:14,138 | WARNING  | found no corresponding commands to process id(s)
[2025-10-21 23:48:56] 2025-10-21 21:48:14,138 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-21 23:48:56] 2025-10-21 21:48:14,139 | INFO     | did not find any defunct processes belonging to 111723
[2025-10-21 23:48:56] 2025-10-21 21:48:14,140 | INFO     | did not find any defunct processes belonging to 111723
[2025-10-21 23:48:56] 2025-10-21 21:48:14,141 | INFO     | ready for new job
[2025-10-21 23:48:56] 2025-10-21 21:48:14,141 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-21 23:48:56] 2025-10-21 21:48:14,141 | INFO     | ***************************************
[2025-10-21 23:48:56] 2025-10-21 21:48:14,141 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-21 23:48:56] 2025-10-21 21:48:14,141 | INFO     | ***************************************
[2025-10-21 23:48:56] 2025-10-21 21:48:14,141 | INFO     | 
[2025-10-21 23:48:56] 2025-10-21 21:48:14,142 | INFO     | architecture information:
[2025-10-21 23:48:56] 2025-10-21 21:48:14,142 | INFO     | executing command: cat /etc/os-release
[2025-10-21 23:48:56] 2025-10-21 21:48:14,146 | INFO     | cat /etc/os-release:
[2025-10-21 23:48:56] NAME="CentOS Linux"
[2025-10-21 23:48:56] VERSION="7 (Core)"
[2025-10-21 23:48:56] ID="centos"
[2025-10-21 23:48:56] ID_LIKE="rhel fedora"
[2025-10-21 23:48:56] VERSION_ID="7"
[2025-10-21 23:48:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-21 23:48:56] ANSI_COLOR="0;31"
[2025-10-21 23:48:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-21 23:48:56] HOME_URL="https://www.centos.org/"
[2025-10-21 23:48:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-21 23:48:56] 
[2025-10-21 23:48:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-21 23:48:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-21 23:48:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-21 23:48:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-21 23:48:56] 
[2025-10-21 23:48:56] 2025-10-21 21:48:14,146 | INFO     | ***************************************
[2025-10-21 23:48:56] 2025-10-21 21:48:14,649 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-21 23:48:56] 2025-10-21 21:48:14,663 | INFO     | sufficient remaining disk space (17944281088 B)
[2025-10-21 23:48:56] 2025-10-21 21:48:14,663 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-21 23:48:56] 2025-10-21 21:48:14,664 | INFO     | current server update state: UPDATING_FINAL
[2025-10-21 23:48:56] 2025-10-21 21:48:14,664 | INFO     | update_server=False
[2025-10-21 23:48:56] 2025-10-21 21:48:14,664 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-21 23:48:56] 2025-10-21 21:48:14,664 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-21 23:48:56] 2025-10-21 21:48:14,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-21 23:48:56] 2025-10-21 21:48:14,709 | INFO     | all payload control threads have been joined
[2025-10-21 23:48:56] 2025-10-21 21:48:14,816 | INFO     | all job control threads have been joined
[2025-10-21 23:48:56] 2025-10-21 21:48:15,074 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-21 23:48:56] 2025-10-21 21:48:15,074 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-21 23:48:56] 2025-10-21 21:48:15,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-21 23:48:56] 2025-10-21 21:48:15,075 | INFO     | will abort loop
[2025-10-21 23:48:56] 2025-10-21 21:48:15,200 | INFO     | all data control threads have been joined
[2025-10-21 23:48:56] 2025-10-21 21:48:15,538 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-21 23:48:56] 2025-10-21 21:48:15,669 | INFO     | [job] retrieve thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:15,669 | INFO     | [job] queue monitor thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:15,711 | INFO     | [payload] control thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:15,821 | INFO     | [job] control thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:15,861 | INFO     | [data] copytool_in thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:15,947 | INFO     | [payload] failed_post thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:15,971 | INFO     | [payload] execute_payloads thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:16,075 | INFO     | [job] job monitor thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:16,201 | INFO     | [data] control thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:16,387 | INFO     | [job] create_data_payload thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:16,771 | INFO     | [payload] validate_pre thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:16,842 | INFO     | [payload] validate_post thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:17,002 | INFO     | [job] validate thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:17,541 | INFO     | [data] copytool_out thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:18,670 | INFO     | [data] queue_monitor thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:25,421 | INFO     | job.realtimelogging is not enabled
[2025-10-21 23:48:56] 2025-10-21 21:48:26,427 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-21 23:48:56] 2025-10-21 21:48:45,698 | INFO     | PID=77303 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-21 23:48:56] 2025-10-21 21:48:45,698 | INFO     | found 0 job(s) in 20 queues
[2025-10-21 23:48:56] 2025-10-21 21:48:45,699 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-21 23:48:56] 2025-10-21 21:48:45,699 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-21 23:48:56] 2025-10-21 21:48:51,082 | INFO     | [monitor] cgroup control has ended
[2025-10-21 23:48:56] 2025-10-21 21:48:51,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140393529136960)>', '<ExcThread(monitor, started 140392993376000)>']
[2025-10-21 23:48:56] 2025-10-21 21:48:51,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-21 23:48:56] 2025-10-21 21:48:51,727 | INFO     | [monitor] control thread has ended
[2025-10-21 23:48:56] 2025-10-21 21:48:56,627 | INFO     | all workflow threads have been joined
[2025-10-21 23:48:56] 2025-10-21 21:48:56,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-21 23:48:56] 2025-10-21 21:48:56,627 | INFO     | traces error code: 0
[2025-10-21 23:48:56] 2025-10-21 21:48:56,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-21 23:48:56] 2025-10-21 21:48:56,681 [wrapper] ==== pilot stdout END ====
[2025-10-21 23:48:56] 2025-10-21 21:48:56,682 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-21 23:48:56] 2025-10-21 21:48:56,683 [wrapper] pilotpid: 77303
[2025-10-21 23:48:56] 2025-10-21 21:48:56,692 [wrapper] Pilot exit status: 0
[2025-10-21 23:48:56] 2025-10-21 21:48:56,695 [wrapper] pandaids: 6852947544
[2025-10-21 23:48:56] 2025-10-21 21:48:56,706 [wrapper] cleanup supervisor_pilot  172125 77304
[2025-10-21 23:48:56] 2025-10-21 21:48:56,708 [wrapper] Test setup, not cleaning
[2025-10-21 23:48:56] 2025-10-21 21:48:56,709 [wrapper] apfmon messages muted
[2025-10-21 23:48:56] 2025-10-21 21:48:56,710 [wrapper] ==== wrapper stdout END ====
[2025-10-21 23:48:56] 2025-10-21 21:48:56,711 [wrapper] ==== wrapper stderr END ====
[2025-10-21 23:48:56]  *** Error codes and diagnostics ***
[2025-10-21 23:48:56]     "exeErrorCode": 0,
[2025-10-21 23:48:56]     "exeErrorDiag": "",
[2025-10-21 23:48:56]     "pilotErrorCode": 0,
[2025-10-21 23:48:56]     "pilotErrorDiag": "",
[2025-10-21 23:48:56]  *** Listing of results directory ***
[2025-10-21 23:48:56] total 426801
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc    557409 Oct 20 23:57 pilot3.tar.gz
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc      5112 Oct 21 00:28 queuedata.json
[2025-10-21 23:48:56] -rwx------ 1 boinc boinc     36292 Oct 21 00:31 runpilot2-wrapper.sh
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc       100 Oct 21 22:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-21 23:48:56] -rwxr-xr-x 1 boinc boinc      7986 Oct 21 22:13 run_atlas
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc       105 Oct 21 22:13 job.xml
[2025-10-21 23:48:56] -rw-r--r-- 2 boinc boinc 226696895 Oct 21 22:13 EVNT.46771634._002132.pool.root.1
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc      6795 Oct 21 22:13 init_data.xml
[2025-10-21 23:48:56] -rw-r--r-- 2 boinc boinc     15120 Oct 21 22:13 start_atlas.sh
[2025-10-21 23:48:56] drwxrwx--x 2 boinc boinc         5 Oct 21 22:13 shared
[2025-10-21 23:48:56] -rw-r--r-- 2 boinc boinc    569675 Oct 21 22:13 input.tar.gz
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc         0 Oct 21 22:13 boinc_lockfile
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc      2559 Oct 21 22:13 pandaJob.out
[2025-10-21 23:48:56] -rw------- 1 boinc boinc    978448 Oct 21 22:13 agis_schedconf.cvmfs.json
[2025-10-21 23:48:56] -rw------- 1 boinc boinc   1560740 Oct 21 22:13 agis_ddmendpoints.agis.ALL.json
[2025-10-21 23:48:56] drwx------ 5 boinc boinc        22 Oct 21 22:13 pilot3
[2025-10-21 23:48:56] -rw------- 1 boinc boinc 208382075 Oct 21 23:47 HITS.46771637._053785.pool.root.1
[2025-10-21 23:48:56] -rw------- 1 boinc boinc      1028 Oct 21 23:47 memory_monitor_summary.json
[2025-10-21 23:48:56] -rw------- 1 boinc boinc    294206 Oct 21 23:48 log.46771637._053785.job.log.tgz.1
[2025-10-21 23:48:56] -rw------- 1 boinc boinc      7753 Oct 21 23:48 heartbeat.json
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc       529 Oct 21 23:48 boinc_task_state.xml
[2025-10-21 23:48:56] -rw------- 1 boinc boinc        95 Oct 21 23:48 pilot_heartbeat.json
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc      8192 Oct 21 23:48 boinc_mmap_file
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc        27 Oct 21 23:48 wrapper_checkpoint.txt
[2025-10-21 23:48:56] -rw------- 1 boinc boinc      5011 Oct 21 23:48 pilotlog.txt
[2025-10-21 23:48:56] -rw------- 1 boinc boinc    830313 Oct 21 23:48 log.46771637._053785.job.log.1
[2025-10-21 23:48:56] -rw------- 1 boinc boinc       357 Oct 21 23:48 output.list
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc      8802 Oct 21 23:48 runtime_log.err
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc       620 Oct 21 23:48 runtime_log
[2025-10-21 23:48:56] -rw------- 1 boinc boinc   1146880 Oct 21 23:48 result.tar.gz
[2025-10-21 23:48:56] -rw------- 1 boinc boinc       658 Oct 21 23:48 qdyMDmBbDV8n9Rq4apOajLDm4fhM0noT9bVof3QYDmh4dMDm7weYam.diag
[2025-10-21 23:48:56] -rw-r--r-- 1 boinc boinc     21874 Oct 21 23:48 stderr.txt
[2025-10-21 23:48:56] HITS file was successfully produced:
[2025-10-21 23:48:56] -rw------- 1 boinc boinc 208382075 Oct 21 23:47 shared/HITS.pool.root.1
[2025-10-21 23:48:56]  *** Contents of shared directory: ***
[2025-10-21 23:48:56] total 425711
[2025-10-21 23:48:56] -rw-r--r-- 2 boinc boinc 226696895 Oct 21 22:13 ATLAS.root_0
[2025-10-21 23:48:56] -rw-r--r-- 2 boinc boinc     15120 Oct 21 22:13 start_atlas.sh
[2025-10-21 23:48:56] -rw-r--r-- 2 boinc boinc    569675 Oct 21 22:13 input.tar.gz
[2025-10-21 23:48:56] -rw------- 1 boinc boinc 208382075 Oct 21 23:47 HITS.pool.root.1
[2025-10-21 23:48:56] -rw------- 1 boinc boinc   1146880 Oct 21 23:48 result.tar.gz
23:48:57 (66554): run_atlas exited; CPU time 32681.494966
23:48:57 (66554): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN